Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008536

Physical Location & Seq

Genomic Coordinates Reverse (-)

13697129 .. 13701415

Gene Structure 4287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G011870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGACTAACAAAGGTAAATTAACAACGAAGCTCAGTTTTACAAGGTGGAATGCTGATTGGAAAAGCGCTACTCTTCTGTATGAACAAGCGGCAAAGGACGCGCTCGACAAAGCATCAAAAGGACAAGAACCCTGGGATGCTGCAAAGCATATGGAGTCTGCTGCTGCTCTAGCAAAGGAGTTGGGCAAGTGGAACAATGTTGCTGATTCTTACAGAAGGGTATCAGATGCTCTTGCAAAAGCAGCCCATGCTCTTGAAGATCCTGTGCCCGAAGAAGCTATTCAACTTTACATTGAGGCGTGCACTATTCTTGAAGACGATGGCAAAGAGCAAATGGCCTTTGATATATATCGAGATGTTACTAGTGCGTATATAAAACTACAGAAGTATACAGATGCTGCAGCTTTCCTGTTGAGATGGGGCTTAGCAGCTGATAAGTGCAATGCTACCCATAGCCAGTGCAAGGCATATCTTAGTGCAATTCTCATATACCTGTATATTCATGACGTCAAGCAGGCAGAAAAATGCTACAACGATTGCTCCCAGGTCTATGCTTTTTTGGGCAATGATCATGGCCGATGTGCTAGTAAACTTCTTTCTGCATACACAGAAGTCATCAGACTCGCCAGGAAACTGCCTACAGGTGATGTCAGTGGACTAAAGACAAATGTGTCTAAGGAGCAAGAAGAAGAATTGGATGAAGATGACCTTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019905 GO:0031090 GO:0031201 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNAP

Protein Analysis

238

Amino Acids

26.6

Weight (kDa)

5.34

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	37 - 203	3.8e-06	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20410 AT4G20410
fragaria_vesca	FvH4_3g11520 FvH4_3g11520 FvH4_3g11520
malus_domestica	MD00G1097300.v1.1
prunus_persica	Prupe.4G102500_v2.0.a1 Prupe.4G102500_v2.0.a1
pyrus_communis	pycom05g24690 pycom10g20160
rosa_chinensis	RchiOBHm_Chr5g0018471
rosa_laevigata	RLG00000032368
rosa_multiflora	Rmu_sc0004464.1_g000015
rosa_roxburghii	Rroxscaffold_1G00059260
rosa_rugosa	Rorug05G0044300
rosa_samantha	Rh5AG135700 Rh5BG134400 Rh5CG146500 Rh5DG135600
rosa_wichuraiana	Rw5G011870 Rw5G011910 Rw5G011990 Rw5G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	670
AatII	GACGTC	1 cut(s)	510
AccI	GTMKAC	1 cut(s)	389
AccII	CGCG	1 cut(s)	101
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	1 cut(s)	254
AcoI	YGGCCR	1 cut(s)	574
AcyI	GRCGYC	1 cut(s)	507
AfeI	AGCGCT	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	463
AgsI	TTSAA	3 cut(s)	257, 284, 314
AhlI	ACTAGT	1 cut(s)	362
AjnI	CCWGG	3 cut(s)	131, 543, 626
AluBI	AGCT	4 cut(s)	31, 278, 404, 431
AluI	AGCT	4 cut(s)	31, 278, 404, 431
Alw21I	GWGCWC	1 cut(s)	305
Alw44I	GTGCAC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	254
AlwNI	CAGNNNCTG	1 cut(s)	398
Aor51HI	AGCGCT	1 cut(s)	67
AoxI	GGCC	2 cut(s)	336, 574
ApaLI	GTGCAC	1 cut(s)	301
ApeKI	GCWGC	7 cut(s)	140, 161, 164, 242, 398, 401, 428
Asp700I	GAANNNNTTC	1 cut(s)	279
AspLEI	GCGC	2 cut(s)	68, 103
AsuHPI	GGTGA	1 cut(s)	656
BaeGI	GKGCMC	2 cut(s)	270, 305
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	7 cut(s)	127, 148, 151, 254, 385, 413, 440
BccI	CCATC	2 cut(s)	314, 411
BciT130I	CCWGG	3 cut(s)	133, 545, 628
BclI	TGATCA	1 cut(s)	568
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	3 cut(s)	170, 363, 585
BfmI	CTRYAG	3 cut(s)	380, 399, 639
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	8 cut(s)	90, 141, 162, 165, 243, 399, 402, 429
BlpI	GCTNAGC	1 cut(s)	424
BlsI	GCNGC	8 cut(s)	91, 142, 163, 166, 244, 400, 403, 430
Bme1390I	CCNGG	3 cut(s)	133, 545, 628
BmrFI	CCNGG	3 cut(s)	133, 545, 628
BmsI	GCATC	4 cut(s)	122, 127, 217, 385
BpiI	GAAGAC	1 cut(s)	321
Bpu1102I	GCTNAGC	1 cut(s)	424
BsaBI	GATNNNNATC	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	507
BsaJI	CCNNGG	3 cut(s)	131, 132, 543
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	457
Bse3DI	GCAATG	2 cut(s)	448, 571
Bse8I	GATNNNNATC	1 cut(s)	348
BseBI	CCWGG	3 cut(s)	133, 545, 628
BseDI	CCNNGG	3 cut(s)	131, 132, 543
BseGI	GGATG	2 cut(s)	142, 703
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseMI	GCAATG	2 cut(s)	448, 571
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	457
BseSI	GKGCMC	2 cut(s)	270, 305
BseXI	GCAGC	7 cut(s)	127, 148, 151, 254, 385, 413, 440
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	338, 576
BsiHKAI	GWGCWC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	463
BsmI	GAATGC	1 cut(s)	55
BsnI	GGCC	2 cut(s)	338, 576
Bsp1286I	GDGCHC	2 cut(s)	270, 305
Bsp143I	GATC	2 cut(s)	259, 568
Bsp1720I	GCTNAGC	1 cut(s)	424
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	2 cut(s)	338, 576
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	502
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	448, 571
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	3 cut(s)	131, 132, 543
BssMI	GATC	2 cut(s)	259, 568
BssNAI	GTATAC	1 cut(s)	390
BssNI	GRCGYC	1 cut(s)	507
Bst1107I	GTATAC	1 cut(s)	390
Bst2UI	CCWGG	3 cut(s)	133, 545, 628
Bst6I	CTCTTC	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	507
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	301, 516
BstDEI	CTNAG	4 cut(s)	32, 424, 473, 675
BstF5I	GGATG	2 cut(s)	142, 703
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	68, 103
BstKTI	GATC	2 cut(s)	262, 571
BstMBI	GATC	2 cut(s)	259, 568
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 170, 242, 248
BstNI	CCWGG	3 cut(s)	133, 545, 628
BstSCI	CCNGG	3 cut(s)	131, 543, 626
BstSFI	CTRYAG	3 cut(s)	380, 399, 639
BstSLI	GKGCMC	2 cut(s)	270, 305
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	7 cut(s)	127, 148, 151, 254, 385, 413, 440
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BstZ17I	GTATAC	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	338, 576
BtsCI	GGATG	2 cut(s)	142, 703
BtsIMutI	CAGTG	2 cut(s)	464, 658
Cac8I	GCNNGC	2 cut(s)	301, 516
CaiI	CAGNNNCTG	1 cut(s)	398
CciI	TCATGA	1 cut(s)	502
CfoI	GCGC	2 cut(s)	68, 103
CseI	GACGC	1 cut(s)	107
CviAII	CATG	3 cut(s)	248, 503, 572
CviJI	RGCY	9 cut(s)	31, 245, 278, 338, 404, 423, 431, 456, 576
CviKI_1	RGCY	9 cut(s)	31, 245, 278, 338, 404, 423, 431, 456, 576
DdeI	CTNAG	4 cut(s)	32, 424, 473, 675
DpnI	GATC	2 cut(s)	261, 570
DpnII	GATC	2 cut(s)	259, 568
DrdI	GACNNNNNNGTC	1 cut(s)	670
DseDI	GACNNNNNNGTC	1 cut(s)	670
EaeI	YGGCCR	1 cut(s)	574
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco47III	AGCGCT	1 cut(s)	67
EcoRII	CCWGG	3 cut(s)	131, 543, 626
FaeI	CATG	3 cut(s)	251, 506, 575
FalI	AAGNNNNNCTT	1 cut(s)	693
FatI	CATG	3 cut(s)	247, 502, 571
FauNDI	CATATG	1 cut(s)	150
FbaI	TGATCA	1 cut(s)	568
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	8 cut(s)	90, 141, 162, 165, 243, 399, 402, 429
FokI	GGATG	2 cut(s)	149, 710
Fsp4HI	GCNGC	8 cut(s)	90, 141, 162, 165, 243, 399, 402, 429
FspBI	CTAG	3 cut(s)	170, 363, 585
GlaI	GCGC	2 cut(s)	67, 102
GluI	GCNGC	8 cut(s)	90, 141, 162, 165, 243, 399, 402, 429
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	338, 576
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	2 cut(s)	68, 103
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	3 cut(s)	251, 506, 575
Hin6I	GCGC	2 cut(s)	66, 101
HinP1I	GCGC	2 cut(s)	66, 101
HinfI	GANTC	3 cut(s)	155, 206, 621
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	4 cut(s)	303, 390, 590, 656
Hpy188I	TCNGA	2 cut(s)	226, 620
Hpy188III	TCNNGA	4 cut(s)	254, 311, 353, 503
Hpy8I	GTNNAC	4 cut(s)	303, 390, 590, 656
HpyAV	CCTTC	1 cut(s)	210
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	8 cut(s)	143, 236, 303, 401, 441, 462, 479, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 170, 242, 248
HpyF3I	CTNAG	4 cut(s)	32, 424, 473, 675
HpySE526I	ACGT	1 cut(s)	507
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	3 cut(s)	251, 506, 575
HspAI	GCGC	2 cut(s)	66, 101
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	259, 568
LmnI	GCTCC	2 cut(s)	545, 679
Lsp1109I	GCAGC	7 cut(s)	127, 148, 151, 254, 385, 413, 440
LweI	GCATC	4 cut(s)	122, 127, 217, 385
MaeI	CTAG	3 cut(s)	170, 363, 585
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	2 cut(s)	261, 570
MboI	GATC	2 cut(s)	259, 568
MboII	GAAGA	7 cut(s)	65, 269, 284, 326, 698, 701, 713
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	270, 305
MluCI	AATT	3 cut(s)	17, 480, 692
MlyI	GAGTC	2 cut(s)	164, 615
MnlI	CCTC	1 cut(s)	289
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	431
MspR9I	CCNGG	3 cut(s)	133, 545, 628
Mva1269I	GAATGC	1 cut(s)	55
MvaI	CCWGG	3 cut(s)	133, 545, 628
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	4 cut(s)	98, 170, 242, 248
NdeI	CATATG	1 cut(s)	150
NdeII	GATC	2 cut(s)	259, 568
NlaIII	CATG	3 cut(s)	251, 506, 575
PagI	TCATGA	1 cut(s)	502
PasI	CCCWGGG	1 cut(s)	132
PctI	GAATGC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	8 cut(s)	91, 142, 163, 166, 244, 400, 403, 430
PleI	GAGTC	2 cut(s)	163, 615
PpsI	GAGTC	2 cut(s)	163, 615
Psp6I	CCWGG	3 cut(s)	131, 543, 626
PspGI	CCWGG	3 cut(s)	131, 543, 626
PstI	CTGCAG	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	8 cut(s)	90, 141, 162, 165, 243, 399, 402, 429
Sau3AI	GATC	2 cut(s)	259, 568
SchI	GAGTC	2 cut(s)	164, 615
ScrFI	CCNGG	3 cut(s)	133, 545, 628
SduI	GDGCHC	2 cut(s)	270, 305
SfaNI	GCATC	4 cut(s)	122, 127, 217, 385
SfcI	CTRYAG	3 cut(s)	380, 399, 639
SpeI	ACTAGT	1 cut(s)	362
Sse9I	AATT	3 cut(s)	17, 480, 692
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	3 cut(s)	170, 363, 585
StyD4I	CCNGG	3 cut(s)	131, 543, 626
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	2 cut(s)	105, 352
TasI	AATT	3 cut(s)	17, 480, 692
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	2 cut(s)	464, 658
TseI	GCWGC	7 cut(s)	140, 161, 164, 242, 398, 401, 428
TspDTI	ATGAA	3 cut(s)	96, 491, 714
TspRI	CASTG	2 cut(s)	464, 658
VneI	GTGCAC	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	3 cut(s)	170, 363, 585
ZraI	GACGTC	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.