Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014394

Physical Location & Seq

Genomic Coordinates Forward (+)

11527229 .. 11529060

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAGCTCTGTCACACAGCTATTCAAGAACAACCCCGTGAACCGTGACCGGATCATCCCACTAGATTTCACCAACACCAAAACCCTACCCGACTCCCACGTCTGGTCCAAACCCGAACCCGAAACCACGAGCGGACCCATTCCCGTCATCAGCTTGTCCAACCCGGAGGAACATGGGCTACTACGACAAGCCTGTGAGGAATGGGGTGTGTTTCATATCACAGACCATGGAGTCTCACACTCGTTACTCCATAACGTTGATTGCCAAATGAAGAGGCTTTTCTCTTTACCCATGCATCGTAAGATCTTAGCCGTTCGATCTCCCGACGAGTCCACTGGTTACGGTGTGGTTCGGATCTCCATGTTCTATGATAAGCTCATGTGGTCTGAAGGATTCTCCGTCATGGGTTCCTCTCTTCGACGTCACGCTACACTCTTATGGCCCGATGATCATGCCGAGTTCTGCAATGTGATGGAAGAGTATCAGAAGGCAATGGATGATTTAAGTCATAGACTAATAAGCATGTTGATGGGCTCGTTAGGGCTAACACATGAAGATTTGGGATGGCTTGTACCAGACAAAACTGGTTCAGGAACTGACTCGATCCAATCCTTTCTGCAGTTGAACTCCTACCCGGTTTGCCCTGACCCTCATCTAGCTATGGGTTTAGCCCCTCACACCGACTCCTCCCTACTTACCATTCTCTACCAAGGCAATATTCCAGGTCTAGAGATTGAAAGTCCACAAGAAGAAGGGTCGAGATGGATTGGAGTAGAGCCAATAGAAGGTAGTCTCGTTGTTATAATGGGAGATTTATCTCATATCATATCCAATGGACAGTTCAGAAGTACAATGCACCGTGCGGTGGTGAACAAGACGCACCACCGTGTCTCAGCCGCTTATTTCGCTGGCCCTCCCAAGAACCTTCAGATCGGACCGTTGACCAGCGACAAGAACCATCCTCCTATTTACAGGCGTTTGATATGGGAAGAGTACCTTGCAGCCAAAGCAACACACTTTAACAAAGCCTTGACTTTGTTCCGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

349

Amino Acids

39.21

Weight (kDa)

6.16

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	47 - 137	8.2e-16	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	204 - 305	1.5e-28	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21690
fragaria_vesca	FvH4_1g04200
malus_domestica	MD15G1145200.v1.1
prunus_persica	Prupe.7G235400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0089681 RchiOBHm_Chr2g0089691
rosa_laevigata	RLG00000016051
rosa_multiflora	Rmu_sc0000665.1_g000022
rosa_roxburghii	Rroxscaffold_2G00151670
rosa_rugosa	Rorug02G0002600
rosa_samantha	Rh2AG048000 Rh2BG046600 Rh2BG046700 Rh2CG048600 Rh2CG048800 Rh2DG048000
rosa_wichuraiana	Rw2G004250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	803
AasI	GACNNNNNNGTC	2 cut(s)	98, 230
AatII	GACGTC	1 cut(s)	424
AccBSI	CCGCTC	1 cut(s)	132
AciI	CCGC	3 cut(s)	132, 863, 897
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	3 cut(s)	59, 362, 598
AcuI	CTGAAG	2 cut(s)	408, 911
AcyI	GRCGYC	1 cut(s)	421
AfaI	GTAC	3 cut(s)	573, 850, 995
AfiI	CCNNNNNNNGG	3 cut(s)	102, 785, 865
AgsI	TTSAA	3 cut(s)	25, 625, 737
AjiI	CACGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	721
AjuI	GAANNNNNNNTTGG	4 cut(s)	702, 734, 824, 856
AleI	CACNNNNGTG	1 cut(s)	885
AluBI	AGCT	5 cut(s)	6, 19, 153, 376, 659
AluI	AGCT	5 cut(s)	6, 19, 153, 376, 659
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	238, 797, 895
AlwI	GGATC	3 cut(s)	59, 362, 598
AlwNI	CAGNNNCTG	1 cut(s)	596
AoxI	GGCC	2 cut(s)	440, 910
ApeKI	GCWGC	1 cut(s)	1001
AspS9I	GGNCC	5 cut(s)	105, 134, 441, 911, 935
AsuC2I	CCSGG	2 cut(s)	164, 635
AsuHPI	GGTGA	2 cut(s)	61, 880
AvaII	GGWCC	3 cut(s)	105, 134, 935
BanII	GRGCYC	2 cut(s)	8, 536
BauI	CACGAG	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	1013
BccI	CCATC	5 cut(s)	466, 523, 558, 756, 966
BceAI	ACGGC	1 cut(s)	296
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	1 cut(s)	723
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	2 cut(s)	164, 635
BcoDI	GTCTC	3 cut(s)	238, 797, 895
BfaI	CTAG	3 cut(s)	62, 656, 728
BfmI	CTRYAG	1 cut(s)	617
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	2 cut(s)	897, 1002
BlsI	GCNGC	2 cut(s)	898, 1003
Bme1390I	CCNGG	3 cut(s)	164, 635, 723
Bme18I	GGWCC	3 cut(s)	105, 134, 935
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	5 cut(s)	105, 134, 441, 911, 935
BmiI	GGNNCC	2 cut(s)	136, 409
BmrFI	CCNGG	3 cut(s)	164, 635, 723
BmsI	GCATC	1 cut(s)	304
BpuMI	CCSGG	2 cut(s)	164, 635
BsaHI	GRCGYC	1 cut(s)	421
BsaJI	CCNNGG	2 cut(s)	226, 709
BsaWI	WCCGGW	1 cut(s)	48
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 785, 865
Bse1I	ACTGG	2 cut(s)	340, 589
Bse3DI	GCAATG	2 cut(s)	472, 498
BseBI	CCWGG	1 cut(s)	723
BseDI	CCNNGG	2 cut(s)	226, 709
BseGI	GGATG	4 cut(s)	54, 502, 569, 958
BseLI	CCNNNNNNNGG	3 cut(s)	102, 785, 865
BseMI	GCAATG	2 cut(s)	472, 498
BseMII	CTCAG	1 cut(s)	906
BseNI	ACTGG	2 cut(s)	340, 589
BseRI	GAGGAG	1 cut(s)	676
BseXI	GCAGC	1 cut(s)	1013
BshFI	GGCC	2 cut(s)	442, 912
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	3 cut(s)	49, 164, 635
BslI	CCNNNNNNNGG	3 cut(s)	102, 785, 865
BsmAI	GTCTC	3 cut(s)	238, 797, 895
BsnI	GGCC	2 cut(s)	442, 912
Bsp1286I	GDGCHC	2 cut(s)	8, 536
Bsp143I	GATC	7 cut(s)	51, 303, 317, 354, 448, 603, 930
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	3 cut(s)	132, 863, 897
BspANI	GGCC	2 cut(s)	442, 912
BspCNI	CTCAG	1 cut(s)	905
BspLI	GGNNCC	2 cut(s)	136, 409
BspMAI	CTGCAG	1 cut(s)	621
BspPI	GGATC	3 cut(s)	59, 362, 598
BsrBI	CCGCTC	1 cut(s)	132
BsrDI	GCAATG	2 cut(s)	472, 498
BsrI	ACTGG	2 cut(s)	340, 589
BssECI	CCNNGG	2 cut(s)	226, 709
BssMI	GATC	7 cut(s)	51, 303, 317, 354, 448, 603, 930
BssNI	GRCGYC	1 cut(s)	421
BssSI	CACGAG	1 cut(s)	127
BssT1I	CCWWGG	2 cut(s)	226, 709
Bst2BI	CACGAG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	723
Bst4CI	ACNGT	6 cut(s)	44, 344, 840, 860, 887, 939
Bst6I	CTCTTC	4 cut(s)	266, 420, 471, 984
BstACI	GRCGYC	1 cut(s)	421
BstC8I	GCNNGC	1 cut(s)	910
BstDEI	CTNAG	2 cut(s)	307, 892
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	4 cut(s)	54, 502, 569, 958
BstKTI	GATC	7 cut(s)	54, 306, 320, 357, 451, 606, 933
BstMAI	GTCTC	3 cut(s)	238, 797, 895
BstMBI	GATC	7 cut(s)	51, 303, 317, 354, 448, 603, 930
BstMWI	GCNNNNNNNGC	2 cut(s)	905, 1007
BstNI	CCWGG	1 cut(s)	723
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	3 cut(s)	162, 633, 721
BstSFI	CTRYAG	1 cut(s)	617
BstV1I	GCAGC	1 cut(s)	1013
BstX2I	RGATCY	2 cut(s)	303, 354
BstYI	RGATCY	2 cut(s)	303, 354
BsuRI	GGCC	2 cut(s)	442, 912
BtgI	CCRYGG	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	4 cut(s)	54, 502, 569, 958
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	910
CaiI	CAGNNNCTG	1 cut(s)	596
Cfr13I	GGNCC	5 cut(s)	105, 134, 441, 911, 935
CpoI	CGGWCCG	1 cut(s)	935
CseI	GACGC	1 cut(s)	886
Csp6I	GTAC	3 cut(s)	572, 849, 994
CspI	CGGWCCG	1 cut(s)	935
CviAII	CATG	9 cut(s)	173, 227, 292, 361, 379, 403, 452, 523, 551
CviQI	GTAC	3 cut(s)	572, 849, 994
DdeI	CTNAG	2 cut(s)	307, 892
DpnI	GATC	7 cut(s)	53, 305, 319, 356, 450, 605, 932
DpnII	GATC	7 cut(s)	51, 303, 317, 354, 448, 603, 930
DrdI	GACNNNNNNGTC	2 cut(s)	98, 230
DseDI	GACNNNNNNGTC	2 cut(s)	98, 230
Eam1104I	CTCTTC	4 cut(s)	266, 420, 471, 984
EarI	CTCTTC	4 cut(s)	266, 420, 471, 984
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	226, 709
Eco24I	GRGCYC	2 cut(s)	8, 536
Eco47I	GGWCC	3 cut(s)	105, 134, 935
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	408, 911
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	721
EcoT14I	CCWWGG	2 cut(s)	226, 709
EcoT22I	ATGCAT	1 cut(s)	297
EcoT38I	GRGCYC	2 cut(s)	8, 536
ErhI	CCWWGG	2 cut(s)	226, 709
FaeI	CATG	9 cut(s)	176, 230, 295, 364, 382, 406, 455, 526, 554
FalI	AAGNNNNNCTT	2 cut(s)	981, 1013
FatI	CATG	9 cut(s)	172, 226, 291, 360, 378, 402, 451, 522, 550
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	897, 1002
FokI	GGATG	4 cut(s)	41, 509, 576, 945
FriOI	GRGCYC	2 cut(s)	8, 536
Fsp4HI	GCNGC	2 cut(s)	897, 1002
FspBI	CTAG	3 cut(s)	62, 656, 728
GluI	GCNGC	2 cut(s)	897, 1002
HaeIII	GGCC	2 cut(s)	442, 912
HapII	CCGG	3 cut(s)	49, 164, 635
HgaI	GACGC	1 cut(s)	886
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	9 cut(s)	176, 230, 295, 364, 382, 406, 455, 526, 554
HincII	GTYRAC	1 cut(s)	942
HindII	GTYRAC	1 cut(s)	942
HinfI	GANTC	6 cut(s)	92, 231, 329, 393, 599, 683
HpaII	CCGG	3 cut(s)	49, 164, 635
HphI	GGTGA	2 cut(s)	61, 880
Hpy166II	GTNNAC	5 cut(s)	40, 333, 743, 871, 942
Hpy188I	TCNGA	6 cut(s)	354, 388, 486, 845, 930, 935
Hpy188III	TCNNGA	5 cut(s)	25, 323, 591, 728, 759
Hpy8I	GTNNAC	5 cut(s)	40, 333, 743, 871, 942
Hpy99I	CGWCG	2 cut(s)	329, 423
HpyAV	CCTTC	5 cut(s)	383, 481, 746, 779, 935
HpyCH4III	ACNGT	6 cut(s)	44, 344, 840, 860, 887, 939
HpyCH4IV	ACGT	3 cut(s)	99, 255, 421
HpyCH4V	TGCA	5 cut(s)	295, 465, 619, 856, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	905, 1007
HpyF3I	CTNAG	2 cut(s)	307, 892
HpySE526I	ACGT	3 cut(s)	99, 255, 421
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	9 cut(s)	176, 230, 295, 364, 382, 406, 455, 526, 554
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	7 cut(s)	51, 303, 317, 354, 448, 603, 930
Lsp1109I	GCAGC	1 cut(s)	1013
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	3 cut(s)	62, 656, 728
MaeII	ACGT	3 cut(s)	99, 255, 421
MaeIII	GTNAC	5 cut(s)	10, 44, 243, 338, 422
MalI	GATC	7 cut(s)	53, 305, 319, 356, 450, 605, 932
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	7 cut(s)	51, 303, 317, 354, 448, 603, 930
MboII	GAAGA	6 cut(s)	283, 407, 488, 566, 761, 1001
MflI	RGATCY	2 cut(s)	303, 354
MhlI	GDGCHC	2 cut(s)	8, 536
MlyI	GAGTC	5 cut(s)	86, 240, 338, 593, 677
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	9 cut(s)	160, 190, 267, 421, 660, 684, 697, 924, 972
Mph1103I	ATGCAT	1 cut(s)	297
MseI	TTAA	2 cut(s)	503, 1020
MslI	CAYNNNNRTG	3 cut(s)	436, 527, 885
MspI	CCGG	3 cut(s)	49, 164, 635
MspR9I	CCNGG	3 cut(s)	164, 635, 723
MvaI	CCWGG	1 cut(s)	723
MwoI	GCNNNNNNNGC	2 cut(s)	905, 1007
NciI	CCSGG	2 cut(s)	164, 635
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	7 cut(s)	51, 303, 317, 354, 448, 603, 930
NlaIII	CATG	9 cut(s)	176, 230, 295, 364, 382, 406, 455, 526, 554
NlaIV	GGNNCC	2 cut(s)	136, 409
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	3 cut(s)	10, 44, 422
NsiI	ATGCAT	1 cut(s)	297
NspI	RCATGY	1 cut(s)	526
OliI	CACNNNNGTG	1 cut(s)	885
PfeI	GAWTC	1 cut(s)	393
PkrI	GCNGC	2 cut(s)	898, 1003
PleI	GAGTC	5 cut(s)	86, 239, 337, 593, 677
PpsI	GAGTC	5 cut(s)	86, 239, 337, 593, 677
PsiI	TTATAA	1 cut(s)	803
Psp124BI	GAGCTC	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	721
PspGI	CCWGG	1 cut(s)	721
PspN4I	GGNNCC	2 cut(s)	136, 409
PspPI	GGNCC	5 cut(s)	105, 134, 441, 911, 935
PsrI	GAACNNNNNNTAC	2 cut(s)	162, 194
PstI	CTGCAG	1 cut(s)	621
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	303, 354
RsaI	GTAC	3 cut(s)	573, 850, 995
RsaNI	GTAC	3 cut(s)	572, 849, 994
RseI	CAYNNNNRTG	3 cut(s)	436, 527, 885
Rsr2I	CGGWCCG	1 cut(s)	935
RsrII	CGGWCCG	1 cut(s)	935
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	503, 1020
SatI	GCNGC	2 cut(s)	897, 1002
Sau3AI	GATC	7 cut(s)	51, 303, 317, 354, 448, 603, 930
Sau96I	GGNCC	5 cut(s)	105, 134, 441, 911, 935
SchI	GAGTC	5 cut(s)	86, 240, 338, 593, 677
ScrFI	CCNGG	3 cut(s)	164, 635, 723
SduI	GDGCHC	2 cut(s)	8, 536
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	617
SinI	GGWCC	3 cut(s)	105, 134, 935
SmiMI	CAYNNNNRTG	3 cut(s)	436, 527, 885
SsiI	CCGC	3 cut(s)	132, 863, 897
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	3 cut(s)	62, 656, 728
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	162, 633, 721
StyI	CCWWGG	2 cut(s)	226, 709
TaaI	ACNGT	6 cut(s)	44, 344, 840, 860, 887, 939
TaiI	ACGT	3 cut(s)	102, 258, 424
TaqI	TCGA	4 cut(s)	316, 418, 602, 758
TatI	WGTACW	1 cut(s)	848
TauI	GCSGC	1 cut(s)	899
TfiI	GAWTC	1 cut(s)	393
Tru1I	TTAA	2 cut(s)	503, 1020
Tru9I	TTAA	2 cut(s)	503, 1020
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	3 cut(s)	10, 44, 422
TseI	GCWGC	1 cut(s)	1001
Tsp45I	GTSAC	3 cut(s)	10, 44, 422
TspDTI	ATGAA	3 cut(s)	203, 284, 567
TspGWI	ACGGA	2 cut(s)	388, 1031
TspRI	CASTG	1 cut(s)	340
VpaK11BI	GGWCC	3 cut(s)	105, 134, 935
XbaI	TCTAGA	1 cut(s)	727
XceI	RCATGY	1 cut(s)	526
XspI	CTAG	3 cut(s)	62, 656, 728
ZraI	GACGTC	1 cut(s)	422
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.