Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014394

Physical Location & Seq

Genomic Coordinates Reverse (-)

3804680 .. 3805453

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46499

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGTTCAACTACTACCCGAAACCTCTCCCATATCGTCCCACTCGACTTCAACTCCATCCACACATTACCCGACTCCCACACTTGGGACTCCTCCACGGACCACCACCCCTTCACAGAACTCGTACCCATCATAGACCTACTTGACCCGAATGCCGCCTCGCTCATACAGCTTGCCTCTGAGCAATGGGGTGTGTTCCAAGTCACCAACCACGGCATTCCAATGAACTTAATCCAAGAAGCGGAGCTACAAGCCCGTGGATTGTTTGAGCTGCCTAGGGACCAAAAACTCCAGGCACTTCGATCACCGGAGAGCTTAACCGGTTACGGGCGAGCCCGCATTTCCGCCAACTTCGCAAAGCTGATGTGGTCGGAGGGTTTCACGATGATCGGGTCTCCGCTTAAACATGCGGCTCAGCTCTGGCCAGATGACCACTCGGTCCAAACCTACTTCTGGTACGTATTCGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

157

Amino Acids

17.73

Weight (kDa)

5.48

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	42 - 143	8.9e-19	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21690
fragaria_vesca	FvH4_1g04200
malus_domestica	MD15G1145200.v1.1
prunus_persica	Prupe.7G235400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0089681 RchiOBHm_Chr2g0089691
rosa_laevigata	RLG00000016051
rosa_multiflora	Rmu_sc0000665.1_g000022
rosa_roxburghii	Rroxscaffold_2G00151670
rosa_rugosa	Rorug02G0002600
rosa_samantha	Rh2AG048000 Rh2BG046600 Rh2BG046700 Rh2CG048600 Rh2CG048800 Rh2DG048000
rosa_wichuraiana	Rw2G004250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AciI	CCGC	6 cut(s)	156, 242, 337, 345, 398, 410
AcoI	YGGCCR	1 cut(s)	422
AfaI	GTAC	2 cut(s)	126, 458
AfiI	CCNNNNNNNGG	5 cut(s)	84, 85, 241, 327, 453
AgeI	ACCGGT	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	9, 52
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	7 cut(s)	172, 247, 271, 315, 361, 418, 470
AluI	AGCT	7 cut(s)	172, 247, 271, 315, 361, 418, 470
Alw26I	GTCTC	1 cut(s)	399
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	271
AsiGI	ACCGGT	1 cut(s)	320
AspA2I	CCTAGG	1 cut(s)	275
AspS9I	GGNCC	3 cut(s)	100, 280, 439
AsuHPI	GGTGA	2 cut(s)	196, 297
AvaII	GGWCC	3 cut(s)	100, 280, 439
AvrII	CCTAGG	1 cut(s)	275
BalI	TGGCCA	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	337
BarI	GAAGNNNNNNTAC	2 cut(s)	231, 263
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	2 cut(s)	65, 137
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	1 cut(s)	276
BisI	GCNGC	3 cut(s)	156, 272, 411
BlnI	CCTAGG	1 cut(s)	275
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	3 cut(s)	157, 273, 412
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	3 cut(s)	100, 280, 439
BmgT120I	GGNCC	3 cut(s)	100, 280, 439
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	275
Bpu1102I	GCTNAGC	1 cut(s)	414
BsaAI	YACGTR	1 cut(s)	460
BsaI	GGTCTC	1 cut(s)	399
BsaJI	CCNNGG	4 cut(s)	96, 211, 256, 275
BsaWI	WCCGGW	2 cut(s)	307, 320
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	5 cut(s)	84, 85, 241, 327, 453
Bse118I	RCCGGY	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	4 cut(s)	96, 211, 256, 275
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	5 cut(s)	84, 85, 241, 327, 453
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	171, 428
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	258
BshFI	GGCC	1 cut(s)	424
BshTI	ACCGGT	1 cut(s)	320
BsiSI	CCGG	2 cut(s)	308, 321
BslFI	GGGAC	3 cut(s)	23, 101, 293
BslI	CCNNNNNNNGG	5 cut(s)	84, 85, 241, 327, 453
BsmAI	GTCTC	1 cut(s)	399
BsmFI	GGGAC	3 cut(s)	23, 101, 293
BsmI	GAATGC	2 cut(s)	157, 216
BsnI	GGCC	1 cut(s)	424
Bso31I	GGTCTC	1 cut(s)	399
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	2 cut(s)	302, 387
Bsp1720I	GCTNAGC	1 cut(s)	414
BspACI	CCGC	6 cut(s)	156, 242, 337, 345, 398, 410
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	2 cut(s)	172, 427
BspLI	GGNNCC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	4 cut(s)	96, 211, 256, 275
BssMI	GATC	2 cut(s)	302, 387
BssT1I	CCWWGG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	460
BstC8I	GCNNGC	3 cut(s)	174, 333, 337
BstDEI	CTNAG	2 cut(s)	180, 414
BstDSI	CCRYGG	3 cut(s)	96, 211, 256
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	305, 390
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	2 cut(s)	302, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 353
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	291
BstSNI	TACGTA	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	424
BtgI	CCRYGG	3 cut(s)	96, 211, 256
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	3 cut(s)	174, 333, 337
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	3 cut(s)	100, 280, 439
Csp6I	GTAC	2 cut(s)	125, 457
CspAI	ACCGGT	1 cut(s)	320
CviAII	CATG	1 cut(s)	407
CviQI	GTAC	2 cut(s)	125, 457
DdeI	CTNAG	2 cut(s)	180, 414
DpnI	GATC	2 cut(s)	304, 389
DpnII	GATC	2 cut(s)	302, 387
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	1 cut(s)	422
EciI	GGCGGA	1 cut(s)	334
Eco105I	TACGTA	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	399
Eco47I	GGWCC	3 cut(s)	100, 280, 439
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	1 cut(s)	410
FaiI	YATR	4 cut(s)	33, 134, 167, 408
FaqI	GGGAC	3 cut(s)	23, 101, 293
FatI	CATG	1 cut(s)	406
FauI	CCCGC	1 cut(s)	344
Fnu4HI	GCNGC	3 cut(s)	156, 272, 411
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	3 cut(s)	156, 272, 411
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	3 cut(s)	156, 272, 411
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	424
HapII	CCGG	2 cut(s)	308, 321
Hin1II	CATG	1 cut(s)	410
HinfI	GANTC	2 cut(s)	74, 89
HpaII	CCGG	2 cut(s)	308, 321
HphI	GGTGA	2 cut(s)	196, 297
Hpy188I	TCNGA	2 cut(s)	181, 373
Hpy188III	TCNNGA	1 cut(s)	382
HpyAV	CCTTC	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 353
HpyF3I	CTNAG	2 cut(s)	180, 414
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	1 cut(s)	410
Kzo9I	GATC	2 cut(s)	302, 387
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	7 cut(s)	278, 305, 321, 334, 406, 438, 439
Lsp1109I	GCAGC	1 cut(s)	258
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	2 cut(s)	202, 323
MalI	GATC	2 cut(s)	304, 389
MboI	GATC	2 cut(s)	302, 387
MhlI	GDGCHC	1 cut(s)	337
MlsI	TGGCCA	1 cut(s)	424
MluNI	TGGCCA	1 cut(s)	424
MlyI	GAGTC	2 cut(s)	68, 83
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	5 cut(s)	35, 103, 169, 187, 367
Mox20I	TGGCCA	1 cut(s)	424
MscI	TGGCCA	1 cut(s)	424
MseI	TTAA	3 cut(s)	230, 317, 402
MslI	CAYNNNNRTG	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	424
MspI	CCGG	2 cut(s)	308, 321
MspR9I	CCNGG	1 cut(s)	293
Mva1269I	GAATGC	2 cut(s)	157, 216
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	169, 353
NdeII	GATC	2 cut(s)	302, 387
NlaIII	CATG	1 cut(s)	410
NlaIV	GGNNCC	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	2 cut(s)	157, 216
PinAI	ACCGGT	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	157, 273, 412
PleI	GAGTC	2 cut(s)	68, 83
PpsI	GAGTC	2 cut(s)	68, 83
Ppu21I	YACGTR	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	281
PspPI	GGNCC	3 cut(s)	100, 280, 439
RsaI	GTAC	2 cut(s)	126, 458
RsaNI	GTAC	2 cut(s)	125, 457
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	3 cut(s)	230, 317, 402
SatI	GCNGC	3 cut(s)	156, 272, 411
Sau3AI	GATC	2 cut(s)	302, 387
Sau96I	GGNCC	3 cut(s)	100, 280, 439
SchI	GAGTC	2 cut(s)	68, 83
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	337
SinI	GGWCC	3 cut(s)	100, 280, 439
SmiMI	CAYNNNNRTG	1 cut(s)	221
SnaBI	TACGTA	1 cut(s)	460
SsiI	CCGC	6 cut(s)	156, 242, 337, 345, 398, 410
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	275
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	2 cut(s)	45, 301
TaqII	GACCGA	1 cut(s)	427
TauI	GCSGC	2 cut(s)	158, 413
Tru1I	TTAA	3 cut(s)	230, 317, 402
Tru9I	TTAA	3 cut(s)	230, 317, 402
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	1 cut(s)	113
VpaK11BI	GGWCC	3 cut(s)	100, 280, 439
XceI	RCATGY	1 cut(s)	410
XmaJI	CCTAGG	1 cut(s)	275
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.