FvH4_1g04200

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
2220255 .. 2222102
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04200.t1

Sequence Viewer

Length: 1068 bp
ATGAGTTCAACTTCAACCTCTACTCGAAACCTCTCCCATATCATCCCACTCGACTTCAACTCCGTCGACACATTACCTGACTCCCACACTTGGGACTCCTCCCCGGACCACCACCTTTTCACAGAATTTGTACCCATCATAGACCTACACGACCCGAACGCCGCCACGCTCATACGGCTTGCCTCCGAGCAATGGGGTGTGTTCCAAGTCACCAACCACGGCGTTCCAATGAACTTGGTACAAGAAGCAGAGGTACAAGCCCGTGGGTTGTTTGAGCTGCCTAGAGACCAAAAACTCCGGGCACTCCGATCACCAGAGAGCTTCAGCGGTTACGGGAGTGCCGGCAATGCCGCTAACTTCTCAAAGCTGATGTGGTCGGAGGGTTTCACGATCATGGGGTCACCGGTTGAACATGCTGCTCAACTCTGGCCAGATGACCAGTCGGTCCAAACTCACTTCTGTGATGTAATGGAGGAGTACCAAAAGAAGATGAAGGGCCTATCTGGAAAACTGATACGGCTGATGCTTGGATCATTGGGCTTGGACAAGGAAGATGTTAAATGGCTGAACCGGCCCAAAAGGAGTAGCACAAATTTTCCACAGGTCCTGCAATTGAACTATTATCCGGTTTGTCCAGACCCGACCCGAGCCATGGGGTTGGCTCCTCATACAGACACCTCGGTTTTCACTGTGCTAAACCAGTGTGACATAAGTGGCCTGCAAGTCTTCCAGGAAGGGATCGGCTGGATGTCCGTTCAGCCGATCCCTGGTGCACTTGTAGTCAATGTAGGTGATTTGATGCACATATTATCCAACGGACGGTTCAAGACTACAATTCACCGTGCGGTTGTCAATGAGTTACATCACCGCATCTCCATTGCCTACTTCTATGGGCCACCGTATGACGTGAAGATATCGCCGCTGATGAAGTTGATCGGCCAAGATCATCCTCCTCTATATCGGCCGGTAACTTGGAAGGAATACCTTGGTATCAAGGGAACACATTTCAACAGGGCACTTGAGTTGATCAGGAATGACACAGGCTATGCATCATTCATATATGAATAG

Protein Analysis

356

Amino Acids

39.95

Weight (kDa)

6.19

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 44 - 145 5.8e-20 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 201 - 299 9.3e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014394)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 443
AccI GTMKAC 1 cut(s) 66
AciI CCGC 6 cut(s) 162, 327, 351, 845, 868, 920
AclWI GGATC 3 cut(s) 538, 746, 757
AcoI YGGCCR 3 cut(s) 428, 937, 962
AcsI RAATTY 2 cut(s) 125, 592
AcuI CTGAAG 1 cut(s) 307
AfaI GTAC 4 cut(s) 132, 240, 255, 479
AfiI CCNNNNNNNGG 6 cut(s) 90, 91, 192, 652, 767, 819
AgeI ACCGGT 1 cut(s) 403
AgsI TTSAA 7 cut(s) 9, 15, 58, 410, 616, 826, 1009
AjiI CACGTC 1 cut(s) 907
AjnI CCWGG 2 cut(s) 729, 766
AjuI GAANNNNNNNTTGG 2 cut(s) 806, 838
AleI CACNNNNGTG 1 cut(s) 459
AluBI AGCT 3 cut(s) 277, 321, 367
AluI AGCT 3 cut(s) 277, 321, 367
Alw21I GWGCWC 1 cut(s) 775
Alw26I GTCTC 1 cut(s) 279
Alw44I GTGCAC 1 cut(s) 771
AlwI GGATC 3 cut(s) 538, 746, 757
AlwNI CAGNNNCTG 1 cut(s) 607
Ama87I CYCGRG 1 cut(s) 645
AoxI GGCC 7 cut(s) 428, 496, 572, 715, 893, 937, 962
ApaLI GTGCAC 1 cut(s) 771
ApeKI GCWGC 2 cut(s) 277, 416
ApoI RAATTY 2 cut(s) 125, 592
AsiGI ACCGGT 1 cut(s) 403
AspS9I GGNCC 6 cut(s) 106, 445, 496, 573, 604, 893
AsuC2I CCSGG 2 cut(s) 104, 299
AsuHPI GGTGA 6 cut(s) 202, 303, 393, 803, 830, 857
AvaI CYCGRG 1 cut(s) 645
AvaII GGWCC 3 cut(s) 106, 445, 604
BaeGI GKGCMC 3 cut(s) 304, 775, 1018
BaeI ACNNNNGTAYC 2 cut(s) 973, 1006
BalI TGGCCA 1 cut(s) 430
BarI GAAGNNNNNNTAC 2 cut(s) 237, 269
BbsI GAAGAC 1 cut(s) 718
Bbv12I GWGCWC 1 cut(s) 775
BbvI GCAGC 2 cut(s) 264, 403
BccI CCATC 1 cut(s) 143
BceAI ACGGC 3 cut(s) 191, 235, 533
BciT130I CCWGG 2 cut(s) 731, 768
BclI TGATCA 1 cut(s) 1026
BcnI CCSGG 2 cut(s) 104, 299
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 1 cut(s) 282
BisI GCNGC 5 cut(s) 162, 278, 351, 417, 920
BlsI GCNGC 5 cut(s) 163, 279, 352, 418, 921
Bme1390I CCNGG 4 cut(s) 104, 299, 731, 768
Bme18I GGWCC 3 cut(s) 106, 445, 604
BmeT110I CYCGRG 1 cut(s) 645
BmgBI CACGTC 1 cut(s) 907
BmgT120I GGNCC 6 cut(s) 106, 445, 496, 573, 604, 893
BmiI GGNNCC 1 cut(s) 663
BmrFI CCNGG 4 cut(s) 104, 299, 731, 768
BmsI GCATC 4 cut(s) 513, 789, 879, 1058
BpiI GAAGAC 1 cut(s) 718
BpuEI CTTGAG 1 cut(s) 1040
BpuMI CCSGG 2 cut(s) 104, 299
BsaI GGTCTC 1 cut(s) 279
BsaJI CCNNGG 7 cut(s) 102, 217, 262, 651, 678, 766, 985
BsaWI WCCGGW 2 cut(s) 403, 625
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 857, 887
Bsc4I CCNNNNNNNGG 6 cut(s) 90, 91, 192, 652, 767, 819
Bse118I RCCGGY 4 cut(s) 341, 403, 570, 964
Bse1I ACTGG 2 cut(s) 439, 700
Bse3DI GCAATG 3 cut(s) 197, 352, 876
BseBI CCWGG 2 cut(s) 731, 768
BseDI CCNNGG 7 cut(s) 102, 217, 262, 651, 678, 766, 985
BseGI GGATG 3 cut(s) 42, 753, 946
BseLI CCNNNNNNNGG 6 cut(s) 90, 91, 192, 652, 767, 819
BseMI GCAATG 3 cut(s) 197, 352, 876
BseNI ACTGG 2 cut(s) 439, 700
BseRI GAGGAG 4 cut(s) 88, 488, 654, 942
BseSI GKGCMC 3 cut(s) 304, 775, 1018
BseX3I CGGCCG 1 cut(s) 962
BseXI GCAGC 2 cut(s) 264, 403
Bsh1285I CGRYCG 1 cut(s) 965
BshFI GGCC 7 cut(s) 430, 498, 574, 717, 895, 939, 964
BshTI ACCGGT 1 cut(s) 403
BsiEI CGRYCG 1 cut(s) 965
BsiHKAI GWGCWC 1 cut(s) 775
BsiHKCI CYCGRG 1 cut(s) 645
BsiSI CCGG 7 cut(s) 104, 298, 342, 404, 571, 626, 965
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 6 cut(s) 90, 91, 192, 652, 767, 819
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 7 cut(s) 430, 498, 574, 717, 895, 939, 964
Bso31I GGTCTC 1 cut(s) 279
BsoBI CYCGRG 1 cut(s) 645
Bsp1286I GDGCHC 3 cut(s) 304, 775, 1018
Bsp143I GATC 8 cut(s) 308, 390, 530, 738, 762, 933, 943, 1026
Bsp19I CCATGG 1 cut(s) 651
BspACI CCGC 6 cut(s) 162, 327, 351, 845, 868, 920
BspANI GGCC 7 cut(s) 430, 498, 574, 717, 895, 939, 964
BspLI GGNNCC 1 cut(s) 663
BspPI GGATC 3 cut(s) 538, 746, 757
BspTNI GGTCTC 1 cut(s) 279
BsrDI GCAATG 3 cut(s) 197, 352, 876
BsrFI RCCGGY 4 cut(s) 341, 403, 570, 964
BsrI ACTGG 2 cut(s) 439, 700
BssAI RCCGGY 4 cut(s) 341, 403, 570, 964
BssECI CCNNGG 7 cut(s) 102, 217, 262, 651, 678, 766, 985
BssMI GATC 8 cut(s) 308, 390, 530, 738, 762, 933, 943, 1026
BssT1I CCWWGG 2 cut(s) 651, 985
Bst2UI CCWGG 2 cut(s) 731, 768
Bst4CI ACNGT 4 cut(s) 691, 822, 842, 900
BstC8I GCNNGC 3 cut(s) 180, 343, 719
BstDSI CCRYGG 3 cut(s) 217, 262, 651
BstEII GGTNACC 1 cut(s) 399
BstF5I GGATG 3 cut(s) 42, 753, 946
BstKTI GATC 8 cut(s) 311, 393, 533, 741, 765, 936, 946, 1029
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 8 cut(s) 308, 390, 530, 738, 762, 933, 943, 1026
BstMCI CGRYCG 1 cut(s) 965
BstMWI GCNNNNNNNGC 3 cut(s) 175, 347, 571
BstNI CCWGG 2 cut(s) 731, 768
BstNSI RCATGY 1 cut(s) 416
BstPI GGTNACC 1 cut(s) 399
BstSCI CCNGG 4 cut(s) 102, 297, 729, 766
BstSLI GKGCMC 3 cut(s) 304, 775, 1018
BstV1I GCAGC 2 cut(s) 264, 403
BstV2I GAAGAC 1 cut(s) 718
BstXI CCANNNNNNTGG 1 cut(s) 658
BstZI CGGCCG 1 cut(s) 962
BsuRI GGCC 7 cut(s) 430, 498, 574, 717, 895, 939, 964
BtgI CCRYGG 3 cut(s) 217, 262, 651
BtrI CACGTC 1 cut(s) 907
BtsCI GGATG 3 cut(s) 42, 753, 946
BtsIMutI CAGTG 2 cut(s) 687, 707
Cac8I GCNNGC 3 cut(s) 180, 343, 719
CaiI CAGNNNCTG 1 cut(s) 607
Cfr10I RCCGGY 4 cut(s) 341, 403, 570, 964
Cfr13I GGNCC 6 cut(s) 106, 445, 496, 573, 604, 893
Csp6I GTAC 4 cut(s) 131, 239, 254, 478
CspAI ACCGGT 1 cut(s) 403
CviAII CATG 3 cut(s) 394, 413, 652
CviQI GTAC 4 cut(s) 131, 239, 254, 478
DpnI GATC 8 cut(s) 310, 392, 532, 740, 764, 935, 945, 1028
DpnII GATC 8 cut(s) 308, 390, 530, 738, 762, 933, 943, 1026
DrdI GACNNNNNNGTC 1 cut(s) 443
DseDI GACNNNNNNGTC 1 cut(s) 443
EaeI YGGCCR 3 cut(s) 428, 937, 962
EagI CGGCCG 1 cut(s) 962
EclXI CGGCCG 1 cut(s) 962
Eco130I CCWWGG 2 cut(s) 651, 985
Eco31I GGTCTC 1 cut(s) 279
Eco32I GATATC 1 cut(s) 915
Eco47I GGWCC 3 cut(s) 106, 445, 604
Eco52I CGGCCG 1 cut(s) 962
Eco57I CTGAAG 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 645
Eco91I GGTNACC 1 cut(s) 399
EcoO109I RGGNCCY 2 cut(s) 496, 604
EcoO65I GGTNACC 1 cut(s) 399
EcoRII CCWGG 2 cut(s) 729, 766
EcoRV GATATC 1 cut(s) 915
EcoT14I CCWWGG 2 cut(s) 651, 985
EcoT22I ATGCAT 1 cut(s) 1051
ErhI CCWWGG 2 cut(s) 651, 985
FaeI CATG 3 cut(s) 397, 416, 655
FaqI GGGAC 1 cut(s) 107
FatI CATG 3 cut(s) 393, 412, 651
FbaI TGATCA 1 cut(s) 1026
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 5 cut(s) 162, 278, 351, 417, 920
FokI GGATG 3 cut(s) 29, 760, 933
Fsp4HI GCNGC 5 cut(s) 162, 278, 351, 417, 920
FspBI CTAG 1 cut(s) 282
GluI GCNGC 5 cut(s) 162, 278, 351, 417, 920
HaeIII GGCC 7 cut(s) 430, 498, 574, 717, 895, 939, 964
HapII CCGG 7 cut(s) 104, 298, 342, 404, 571, 626, 965
Hin1II CATG 3 cut(s) 397, 416, 655
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 2 cut(s) 80, 95
HpaII CCGG 7 cut(s) 104, 298, 342, 404, 571, 626, 965
HphI GGTGA 6 cut(s) 202, 303, 393, 803, 830, 857
Hpy166II GTNNAC 2 cut(s) 67, 773
Hpy188I TCNGA 3 cut(s) 187, 308, 379
Hpy188III TCNNGA 5 cut(s) 388, 504, 635, 826, 1030
Hpy8I GTNNAC 2 cut(s) 67, 773
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 3 cut(s) 487, 728, 970
HpyCH4III ACNGT 4 cut(s) 691, 822, 842, 900
HpyCH4IV ACGT 1 cut(s) 906
HpyCH4V TGCA 5 cut(s) 610, 721, 773, 802, 1049
HpyF10VI GCNNNNNNNGC 3 cut(s) 175, 347, 571
HpySE526I ACGT 1 cut(s) 906
Hsp92II CATG 3 cut(s) 397, 416, 655
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 1026
Kzo9I GATC 8 cut(s) 308, 390, 530, 738, 762, 933, 943, 1026
LmnI GCTCC 1 cut(s) 667
Lsp1109I GCAGC 2 cut(s) 264, 403
LweI GCATC 4 cut(s) 513, 789, 879, 1058
MaeI CTAG 1 cut(s) 282
MaeII ACGT 1 cut(s) 906
MaeIII GTNAC 6 cut(s) 208, 329, 399, 704, 858, 967
MalI GATC 8 cut(s) 310, 392, 532, 740, 764, 935, 945, 1028
MboI GATC 8 cut(s) 308, 390, 530, 738, 762, 933, 943, 1026
MboII GAAGA 4 cut(s) 499, 563, 718, 922
MfeI CAATTG 1 cut(s) 611
MhlI GDGCHC 3 cut(s) 304, 775, 1018
MlsI TGGCCA 1 cut(s) 430
MluCI AATT 4 cut(s) 125, 592, 611, 834
MluNI TGGCCA 1 cut(s) 430
MlyI GAGTC 2 cut(s) 74, 89
MmeI TCCRAC 2 cut(s) 357, 837
Mox20I TGGCCA 1 cut(s) 430
Mph1103I ATGCAT 1 cut(s) 1051
MroNI GCCGGC 1 cut(s) 341
MscI TGGCCA 1 cut(s) 430
MseI TTAA 1 cut(s) 558
MslI CAYNNNNRTG 2 cut(s) 392, 459
Msp20I TGGCCA 1 cut(s) 430
MspA1I CMGCKG 2 cut(s) 327, 922
MspI CCGG 7 cut(s) 104, 298, 342, 404, 571, 626, 965
MspR9I CCNGG 4 cut(s) 104, 299, 731, 768
MunI CAATTG 1 cut(s) 611
MvaI CCWGG 2 cut(s) 731, 768
MwoI GCNNNNNNNGC 3 cut(s) 175, 347, 571
NaeI GCCGGC 1 cut(s) 343
NciI CCSGG 2 cut(s) 104, 299
NcoI CCATGG 1 cut(s) 651
NdeII GATC 8 cut(s) 308, 390, 530, 738, 762, 933, 943, 1026
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 3 cut(s) 397, 416, 655
NlaIV GGNNCC 1 cut(s) 663
NmuCI GTSAC 3 cut(s) 208, 399, 704
NsiI ATGCAT 1 cut(s) 1051
NspI RCATGY 1 cut(s) 416
OliI CACNNNNGTG 1 cut(s) 459
PdiI GCCGGC 1 cut(s) 343
PfoI TCCNGGA 1 cut(s) 729
PinAI ACCGGT 1 cut(s) 403
PkrI GCNGC 5 cut(s) 163, 279, 352, 418, 921
PleI GAGTC 2 cut(s) 74, 89
PpsI GAGTC 2 cut(s) 74, 89
PpuMI RGGWCCY 1 cut(s) 604
Psp5II RGGWCCY 1 cut(s) 604
Psp6I CCWGG 2 cut(s) 729, 766
PspEI GGTNACC 1 cut(s) 399
PspGI CCWGG 2 cut(s) 729, 766
PspN4I GGNNCC 1 cut(s) 663
PspPI GGNCC 6 cut(s) 106, 445, 496, 573, 604, 893
PspPPI RGGWCCY 1 cut(s) 604
PstNI CAGNNNCTG 1 cut(s) 607
RsaI GTAC 4 cut(s) 132, 240, 255, 479
RsaNI GTAC 4 cut(s) 131, 239, 254, 478
RseI CAYNNNNRTG 2 cut(s) 392, 459
SalI GTCGAC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 5 cut(s) 162, 278, 351, 417, 920
Sau3AI GATC 8 cut(s) 308, 390, 530, 738, 762, 933, 943, 1026
Sau96I GGNCC 6 cut(s) 106, 445, 496, 573, 604, 893
SchI GAGTC 2 cut(s) 74, 89
ScrFI CCNGG 4 cut(s) 104, 299, 731, 768
SduI GDGCHC 3 cut(s) 304, 775, 1018
SfaNI GCATC 4 cut(s) 513, 789, 879, 1058
SinI GGWCC 3 cut(s) 106, 445, 604
SmiMI CAYNNNNRTG 2 cut(s) 392, 459
SmlI CTYRAG 1 cut(s) 1019
SmoI CTYRAG 1 cut(s) 1019
Sse9I AATT 4 cut(s) 125, 592, 611, 834
SsiI CCGC 6 cut(s) 162, 327, 351, 845, 868, 920
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 4 cut(s) 102, 297, 729, 766
StyI CCWWGG 2 cut(s) 651, 985
TaaI ACNGT 4 cut(s) 691, 822, 842, 900
TaiI ACGT 1 cut(s) 909
TaqI TCGA 3 cut(s) 25, 51, 66
TaqII GACCGA 1 cut(s) 433
TasI AATT 4 cut(s) 125, 592, 611, 834
TauI GCSGC 3 cut(s) 164, 353, 922
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TscAI CASTG 2 cut(s) 694, 707
TseFI GTSAC 3 cut(s) 208, 399, 704
TseI GCWGC 2 cut(s) 277, 416
Tsp45I GTSAC 3 cut(s) 208, 399, 704
TspDTI ATGAA 4 cut(s) 245, 506, 941, 1045
TspGWI ACGGA 3 cut(s) 52, 742, 831
TspRI CASTG 2 cut(s) 694, 707
VneI GTGCAC 1 cut(s) 771
VpaK11BI GGWCC 3 cut(s) 106, 445, 604
XapI RAATTY 2 cut(s) 125, 592
XceI RCATGY 1 cut(s) 416
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.