Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014394

Physical Location & Seq

Genomic Coordinates Reverse (-)

3880668 .. 3881048

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG048800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCTAAACCAGCCCAAAAAGAGTGGCTGAAATTTTCCGTAGGTCTTGCAACTGAGCTCGTATCCGGACATCCGGTCTGCCCGGACCCGAGCCGAGCCATGGGGTTGGCTCCTCACACAGACTCCTCAATTTTCACAGTGCCAAACCAAGGCAACATAAGTGGCCTGCAAGTCTTTGAGGATGGGATTGGTTGGGTGCCGGTTCACCCGATCCCCGGTGCACTTGTAGTCAATGTAGGTGATTTGATGCACATACTATCCAACGGCCGGTTCAAGACTGCAGTGCATCGTGCGGTTGACAATGAGCTATATCACTGCATCTCCATCGCCTCCTTCTACAGCCCACTGTACGACGTGAAGATATCACCACCGATGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

126

Amino Acids

13.63

Weight (kDa)

6.57

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	25 - 115	4.2e-26	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21690
fragaria_vesca	FvH4_1g04200
malus_domestica	MD15G1145200.v1.1
prunus_persica	Prupe.7G235400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0089681 RchiOBHm_Chr2g0089691
rosa_laevigata	RLG00000016051
rosa_multiflora	Rmu_sc0000665.1_g000022
rosa_roxburghii	Rroxscaffold_2G00151670
rosa_rugosa	Rorug02G0002600
rosa_samantha	Rh2AG048000 Rh2BG046600 Rh2BG046700 Rh2CG048600 Rh2CG048800 Rh2DG048000
rosa_wichuraiana	Rw2G004250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccIII	TCCGGA	1 cut(s)	65
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	32
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	4 cut(s)	100, 149, 215, 267
AgsI	TTSAA	1 cut(s)	274
AhdI	GACNNNNNGTC	1 cut(s)	74
AjiI	CACGTC	1 cut(s)	355
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	2 cut(s)	58, 307
AluI	AGCT	2 cut(s)	58, 307
Alw21I	GWGCWC	2 cut(s)	60, 223
Alw44I	GTGCAC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	205
Ama87I	CYCGRG	1 cut(s)	88
Aor13HI	TCCGGA	1 cut(s)	65
AoxI	GGCC	2 cut(s)	163, 265
ApaLI	GTGCAC	1 cut(s)	219
ApoI	RAATTY	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	2 cut(s)	83, 216
AsuHPI	GGTGA	3 cut(s)	197, 251, 357
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	60
Bbv12I	GWGCWC	2 cut(s)	60, 223
BccI	CCATC	2 cut(s)	176, 332
BceAI	ACGGC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	307, 341
BciVI	GTATCC	1 cut(s)	73
BcnI	CCSGG	2 cut(s)	83, 216
BfmI	CTRYAG	2 cut(s)	279, 337
BfuI	GTATCC	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	83, 216
Bme18I	GGWCC	1 cut(s)	85
BmeRI	GACNNNNNGTC	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	88
BmgBI	CACGTC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	3 cut(s)	87, 111, 198
BmrFI	CCNGG	2 cut(s)	83, 216
BmsI	GCATC	3 cut(s)	237, 295, 327
BpuMI	CCSGG	2 cut(s)	83, 216
BsaJI	CCNNGG	3 cut(s)	99, 148, 214
BsaWI	WCCGGW	2 cut(s)	65, 73
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 305, 335
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 149, 215, 267
Bse118I	RCCGGY	2 cut(s)	199, 267
BseAI	TCCGGA	1 cut(s)	65
BseDI	CCNNGG	3 cut(s)	99, 148, 214
BseGI	GGATG	2 cut(s)	70, 187
BseLI	CCNNNNNNNGG	4 cut(s)	100, 149, 215, 267
BseMII	CTCAG	1 cut(s)	45
BseRI	GAGGAG	2 cut(s)	102, 115
BseSI	GKGCMC	1 cut(s)	223
BseX3I	CGGCCG	1 cut(s)	265
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	2 cut(s)	165, 267
BshNI	GGYRCC	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	268
BsiHKAI	GWGCWC	2 cut(s)	60, 223
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	6 cut(s)	66, 74, 83, 200, 216, 268
BslI	CCNNNNNNNGG	4 cut(s)	100, 149, 215, 267
BsnI	GGCC	2 cut(s)	165, 267
BsoBI	CYCGRG	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	60, 223
Bsp13I	TCCGGA	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	2 cut(s)	165, 267
BspCNI	CTCAG	1 cut(s)	46
BspEI	TCCGGA	1 cut(s)	65
BspLI	GGNNCC	3 cut(s)	87, 111, 198
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	196
BsrFI	RCCGGY	2 cut(s)	199, 267
BssAI	RCCGGY	2 cut(s)	199, 267
BssECI	CCNNGG	3 cut(s)	99, 148, 214
BssMI	GATC	1 cut(s)	210
BssT1I	CCWWGG	2 cut(s)	99, 148
Bst4CI	ACNGT	2 cut(s)	139, 348
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	70, 187
BstKTI	GATC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	210
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	81, 214
BstSFI	CTRYAG	2 cut(s)	279, 337
BstSLI	GKGCMC	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	106
BstZI	CGGCCG	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	165, 267
BtgI	CCRYGG	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	310
BtrI	CACGTC	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	70, 187
BtsI	GCAGTG	2 cut(s)	288, 313
BtsIMutI	CAGTG	4 cut(s)	144, 288, 313, 344
Cac8I	GCNNGC	1 cut(s)	167
Cfr10I	RCCGGY	2 cut(s)	199, 267
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	349
CspCI	CAANNNNNGTGG	4 cut(s)	5, 40, 142, 177
CviAII	CATG	1 cut(s)	100
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
DriI	GACNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	1 cut(s)	265
EagI	CGGCCG	1 cut(s)	265
Eam1105I	GACNNNNNGTC	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	58
EclXI	CGGCCG	1 cut(s)	265
Eco130I	CCWWGG	2 cut(s)	99, 148
Eco24I	GRGCYC	1 cut(s)	60
Eco32I	GATATC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	85
Eco52I	CGGCCG	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	58
EcoRV	GATATC	1 cut(s)	363
EcoT14I	CCWWGG	2 cut(s)	99, 148
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	2 cut(s)	99, 148
FaeI	CATG	1 cut(s)	103
FaiI	YATR	4 cut(s)	101, 158, 254, 310
FatI	CATG	1 cut(s)	99
FokI	GGATG	2 cut(s)	57, 194
FriOI	GRGCYC	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	165, 267
HapII	CCGG	6 cut(s)	66, 74, 83, 200, 216, 268
Hin1II	CATG	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	6 cut(s)	66, 74, 83, 200, 216, 268
HphI	GGTGA	3 cut(s)	197, 251, 357
Hpy166II	GTNNAC	3 cut(s)	205, 221, 298
Hpy188III	TCNNGA	2 cut(s)	66, 274
Hpy8I	GTNNAC	3 cut(s)	205, 221, 298
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	2 cut(s)	139, 348
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	7 cut(s)	50, 169, 221, 250, 281, 286, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	8 cut(s)	24, 79, 87, 96, 179, 213, 229, 281
LweI	GCATC	3 cut(s)	237, 295, 327
MaeII	ACGT	1 cut(s)	354
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	60, 223
MluCI	AATT	2 cut(s)	32, 129
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	4 cut(s)	123, 136, 172, 340
MroI	TCCGGA	1 cut(s)	65
MspI	CCGG	6 cut(s)	66, 74, 83, 200, 216, 268
MspR9I	CCNGG	2 cut(s)	83, 216
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	2 cut(s)	83, 216
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	3 cut(s)	87, 111, 198
NmeAIII	GCCGAG	1 cut(s)	119
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	60
PspN4I	GGNNCC	3 cut(s)	87, 111, 198
PspPI	GGNCC	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	283
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SacI	GAGCTC	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	83, 216
SduI	GDGCHC	2 cut(s)	60, 223
SetI	ASST	5 cut(s)	46, 60, 241, 309, 357
SfaNI	GCATC	3 cut(s)	237, 295, 327
SfcI	CTRYAG	2 cut(s)	279, 337
SinI	GGWCC	1 cut(s)	85
Sse9I	AATT	2 cut(s)	32, 129
SsiI	CCGC	1 cut(s)	293
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	81, 214
StyI	CCWWGG	2 cut(s)	99, 148
TaaI	ACNGT	2 cut(s)	139, 348
TaiI	ACGT	1 cut(s)	357
TasI	AATT	2 cut(s)	32, 129
TscAI	CASTG	4 cut(s)	144, 288, 320, 351
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	4 cut(s)	144, 288, 320, 351
VneI	GTGCAC	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.