Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014394

Physical Location & Seq

Genomic Coordinates Reverse (-)

3864738 .. 3865337

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG048600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGGAGTACCAAAAGAAGATGAAGGGCCTATGTGGAAAATTGATAAGGCTGTTGCTTGGATCATTGGGCTTGGACCAAGAAGATGTTAAATGGCTGAACCGGCCCAAAAAGAGTGGCAGAAATTTTCCACAGGTCTTGCAACTGAACTCGTATCCGGTTTGTCCGGAACCGTCCCGAGCCATGGGGTTGGCTCCTCACACAGACTCCTCAATTTTCACAGTGCTAAACCAAAGCAACATAAGTGGCCTGCAAGTCTTTGAGGATGGGATTGGTTGGGTGCCGGTTCACCCGATCCCCGGTGCACTTGTAGTCAATGTAGGTGATTTGTTGCACATACTATCCAACGGCCGGTTCAAGACTGCAGTGCATCGTGCGGTTGTCAATGAGCTATATCACCGCATCTCCATCGCCTACTTCTACAGCCCACCGAACGACGTGAAGATATCACCGCCGATGAAGTTGATCGACCAAGATCATCCTCCCCTATATCGACCGGTAACTTGGAAGGAATACCTTGGTATCAAAGGAACACATTTCAACAGGGCACTTGATCTAATCAGGAATGACACGGACCAAGCACCATACATGCATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

199

Amino Acids

22.52

Weight (kDa)

8.82

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	45 - 143	5.9e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21690
fragaria_vesca	FvH4_1g04200
malus_domestica	MD15G1145200.v1.1
prunus_persica	Prupe.7G235400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0089681 RchiOBHm_Chr2g0089691
rosa_laevigata	RLG00000016051
rosa_multiflora	Rmu_sc0000665.1_g000022
rosa_roxburghii	Rroxscaffold_2G00151670
rosa_rugosa	Rorug02G0002600
rosa_samantha	Rh2AG048000 Rh2BG046600 Rh2BG046700 Rh2CG048600 Rh2CG048800 Rh2DG048000
rosa_wichuraiana	Rw2G004250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	280
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	3 cut(s)	377, 400, 452
AclWI	GGATC	2 cut(s)	70, 289
AcoI	YGGCCR	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	3 cut(s)	184, 299, 351
AgeI	ACCGGT	1 cut(s)	496
AgsI	TTSAA	2 cut(s)	358, 541
AjiI	CACGTC	1 cut(s)	439
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	1 cut(s)	391
AluI	AGCT	1 cut(s)	391
Alw21I	GWGCWC	1 cut(s)	307
Alw44I	GTGCAC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	70, 289
Ama87I	CYCGRG	1 cut(s)	177
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	4 cut(s)	28, 104, 247, 349
ApaLI	GTGCAC	1 cut(s)	303
ApoI	RAATTY	1 cut(s)	124
AsiGI	ACCGGT	1 cut(s)	496
AspS9I	GGNCC	4 cut(s)	28, 76, 105, 574
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	4 cut(s)	281, 335, 389, 441
AvaI	CYCGRG	1 cut(s)	177
AvaII	GGWCC	2 cut(s)	76, 574
BaeGI	GKGCMC	2 cut(s)	307, 550
BaeI	ACNNNNGTAYC	2 cut(s)	505, 538
BanI	GGYRCC	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	307
BccI	CCATC	2 cut(s)	260, 416
BceAI	ACGGC	1 cut(s)	364
BcgI	CGANNNNNNTGC	2 cut(s)	391, 425
BciVI	GTATCC	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	300
BfmI	CTRYAG	2 cut(s)	363, 421
BfuI	GTATCC	1 cut(s)	165
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	2 cut(s)	76, 574
BmeT110I	CYCGRG	1 cut(s)	177
BmgBI	CACGTC	1 cut(s)	439
BmgT120I	GGNCC	4 cut(s)	28, 76, 105, 574
BmiI	GGNNCC	3 cut(s)	171, 195, 282
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	379, 411
BpuMI	CCSGG	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	183, 298, 517
BsaWI	WCCGGW	3 cut(s)	157, 166, 496
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 389, 419
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 299, 351
Bse118I	RCCGGY	4 cut(s)	102, 283, 351, 496
BseAI	TCCGGA	1 cut(s)	166
BseDI	CCNNGG	3 cut(s)	183, 298, 517
BseGI	GGATG	2 cut(s)	271, 478
BseLI	CCNNNNNNNGG	3 cut(s)	184, 299, 351
BseRI	GAGGAG	3 cut(s)	20, 186, 199
BseSI	GKGCMC	2 cut(s)	307, 550
BseX3I	CGGCCG	1 cut(s)	349
Bsh1285I	CGRYCG	2 cut(s)	352, 497
BshFI	GGCC	4 cut(s)	30, 106, 249, 351
BshNI	GGYRCC	1 cut(s)	280
BshTI	ACCGGT	1 cut(s)	496
BsiEI	CGRYCG	2 cut(s)	352, 497
BsiHKAI	GWGCWC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	177
BsiSI	CCGG	7 cut(s)	103, 158, 167, 284, 300, 352, 497
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	3 cut(s)	184, 299, 351
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	4 cut(s)	30, 106, 249, 351
BsoBI	CYCGRG	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	307, 550
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	5 cut(s)	62, 294, 465, 475, 553
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	3 cut(s)	377, 400, 452
BspANI	GGCC	4 cut(s)	30, 106, 249, 351
BspEI	TCCGGA	1 cut(s)	166
BspLI	GGNNCC	3 cut(s)	171, 195, 282
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	2 cut(s)	70, 289
BspT107I	GGYRCC	1 cut(s)	280
BsrFI	RCCGGY	4 cut(s)	102, 283, 351, 496
BssAI	RCCGGY	4 cut(s)	102, 283, 351, 496
BssECI	CCNNGG	3 cut(s)	183, 298, 517
BssMI	GATC	5 cut(s)	62, 294, 465, 475, 553
BssT1I	CCWWGG	2 cut(s)	183, 517
Bst4CI	ACNGT	2 cut(s)	174, 223
BstC8I	GCNNGC	1 cut(s)	251
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	271, 478
BstKTI	GATC	5 cut(s)	65, 297, 468, 478, 556
BstMBI	GATC	5 cut(s)	62, 294, 465, 475, 553
BstMCI	CGRYCG	2 cut(s)	352, 497
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	2 cut(s)	363, 421
BstSLI	GKGCMC	2 cut(s)	307, 550
BstXI	CCANNNNNNTGG	1 cut(s)	190
BstZI	CGGCCG	1 cut(s)	349
BsuI	GTATCC	1 cut(s)	165
BsuRI	GGCC	4 cut(s)	30, 106, 249, 351
BtgI	CCRYGG	1 cut(s)	183
BtgZI	GCGATG	1 cut(s)	394
BtrI	CACGTC	1 cut(s)	439
BtsCI	GGATG	2 cut(s)	271, 478
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	228, 372
Cac8I	GCNNGC	1 cut(s)	251
Cfr10I	RCCGGY	4 cut(s)	102, 283, 351, 496
Cfr13I	GGNCC	4 cut(s)	28, 76, 105, 574
Csp6I	GTAC	1 cut(s)	10
CspAI	ACCGGT	1 cut(s)	496
CspCI	CAANNNNNGTGG	6 cut(s)	97, 120, 132, 155, 226, 261
CviAII	CATG	3 cut(s)	184, 589, 593
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	5 cut(s)	64, 296, 467, 477, 555
DpnII	GATC	5 cut(s)	62, 294, 465, 475, 553
EaeI	YGGCCR	1 cut(s)	349
EagI	CGGCCG	1 cut(s)	349
EclXI	CGGCCG	1 cut(s)	349
Eco130I	CCWWGG	2 cut(s)	183, 517
Eco32I	GATATC	1 cut(s)	447
Eco47I	GGWCC	2 cut(s)	76, 574
Eco52I	CGGCCG	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	447
EcoT14I	CCWWGG	2 cut(s)	183, 517
EcoT22I	ATGCAT	1 cut(s)	594
ErhI	CCWWGG	2 cut(s)	183, 517
FaeI	CATG	3 cut(s)	187, 592, 596
FaiI	YATR	9 cut(s)	34, 185, 242, 338, 394, 490, 586, 590, 594
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	3 cut(s)	183, 588, 592
FokI	GGATG	2 cut(s)	278, 465
HaeIII	GGCC	4 cut(s)	30, 106, 249, 351
HapII	CCGG	7 cut(s)	103, 158, 167, 284, 300, 352, 497
Hin1II	CATG	3 cut(s)	187, 592, 596
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	7 cut(s)	103, 158, 167, 284, 300, 352, 497
HphI	GGTGA	4 cut(s)	281, 335, 389, 441
Hpy166II	GTNNAC	2 cut(s)	289, 305
Hpy188III	TCNNGA	4 cut(s)	167, 177, 358, 562
Hpy8I	GTNNAC	2 cut(s)	289, 305
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	2 cut(s)	19, 502
HpyCH4III	ACNGT	2 cut(s)	174, 223
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	7 cut(s)	142, 253, 305, 334, 365, 370, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpySE526I	ACGT	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	187, 592, 596
Kpn2I	TCCGGA	1 cut(s)	166
Kzo9I	GATC	5 cut(s)	62, 294, 465, 475, 553
LmnI	GCTCC	1 cut(s)	199
LweI	GCATC	2 cut(s)	379, 411
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	5 cut(s)	64, 296, 467, 477, 555
MboI	GATC	5 cut(s)	62, 294, 465, 475, 553
MboII	GAAGA	3 cut(s)	31, 95, 454
MhlI	GDGCHC	2 cut(s)	307, 550
MluCI	AATT	3 cut(s)	41, 124, 213
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	4 cut(s)	207, 220, 256, 492
Mph1103I	ATGCAT	1 cut(s)	594
MroI	TCCGGA	1 cut(s)	166
MseI	TTAA	1 cut(s)	90
MspI	CCGG	7 cut(s)	103, 158, 167, 284, 300, 352, 497
MspR9I	CCNGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	103
NciI	CCSGG	1 cut(s)	300
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	5 cut(s)	62, 294, 465, 475, 553
NlaIII	CATG	3 cut(s)	187, 592, 596
NlaIV	GGNNCC	3 cut(s)	171, 195, 282
NsiI	ATGCAT	1 cut(s)	594
NspI	RCATGY	1 cut(s)	592
PinAI	ACCGGT	1 cut(s)	496
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PspN4I	GGNNCC	3 cut(s)	171, 195, 282
PspPI	GGNCC	4 cut(s)	28, 76, 105, 574
PstI	CTGCAG	1 cut(s)	367
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	90
Sau3AI	GATC	5 cut(s)	62, 294, 465, 475, 553
Sau96I	GGNCC	4 cut(s)	28, 76, 105, 574
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	2 cut(s)	307, 550
SetI	ASST	5 cut(s)	138, 325, 393, 441, 519
SfaNI	GCATC	2 cut(s)	379, 411
SfcI	CTRYAG	2 cut(s)	363, 421
SinI	GGWCC	2 cut(s)	76, 574
Sse9I	AATT	3 cut(s)	41, 124, 213
SsiI	CCGC	3 cut(s)	377, 400, 452
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	2 cut(s)	183, 517
TaaI	ACNGT	2 cut(s)	174, 223
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	2 cut(s)	468, 493
TasI	AATT	3 cut(s)	41, 124, 213
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	2 cut(s)	228, 372
TspDTI	ATGAA	2 cut(s)	38, 473
TspGWI	ACGGA	1 cut(s)	587
TspRI	CASTG	2 cut(s)	228, 372
VneI	GTGCAC	1 cut(s)	303
VpaK11BI	GGWCC	2 cut(s)	76, 574
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	1 cut(s)	592
Zsp2I	ATGCAT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.