AT4G21780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011062
Physical Location & Seq
Forward (+)
11566990 .. 11568494
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G21780.1

Sequence Viewer

Length: 348 bp
ATGGCTGCTCCAATCGCCATAGGAACACGAGGAACCATCGGATCGCTTGTACGTAAAGAAATCGACTACTTCAAAAACTTCTCTACATGTCATCCCCAATTCGATCCACGGAGAGGCAATTCGGAAGAAAACAAAAATACATTTAAACAAAGAGATCGGTCATCATCACGGTTGGGTTCTTGGTTCTCTAAAACTAAATGGAGAAAGAAGAAGCGGCAGACTCGTGGTGGCGGTGGCAAGTTTTTTCCGAGTATGTGCTCGGCGGTGGAGGTTTCCGGCGAGAATCGAGTTCCGGGTTTCAACTATAGGATCTTGAAGAGTGATCATCAGAAGGGCTTGCGTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.13

Weight (kDa)

10.83

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21780 AT4G21780 AT4G21780
fragaria_vesca FvH4_3g02450
malus_domestica MD10G1317900.v1.1
prunus_persica Prupe.4G023900_v2.0.a1 Prupe.4G209300_v2.0.a1
pyrus_communis pycom03g15660 pycom05g31240 pycom10g26940
rosa_chinensis RchiOBHm_Chr5g0003701
rosa_laevigata RLG00000031167 RLG00000033841
rosa_multiflora Rmu_sc0000500.1_g000002
rosa_rugosa Rorug04G0406000 Rorug05G0171700
rosa_samantha Rh5BG031400 Rh5CG035500 Rh5DG032000
rosa_wichuraiana Rw5G003040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 214, 231, 263
AclWI GGATC 3 cut(s) 49, 98, 317
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 86
AgsI TTSAA 3 cut(s) 73, 301, 316
Alw21I GWGCWC 1 cut(s) 260
AlwI GGATC 3 cut(s) 49, 98, 317
ApeKI GCWGC 1 cut(s) 5
AsuC2I CCSGG 1 cut(s) 294
BauI CACGAG 2 cut(s) 27, 222
Bbv12I GWGCWC 1 cut(s) 260
BccI CCATC 1 cut(s) 44
BclI TGATCA 1 cut(s) 322
BcnI CCSGG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 304
BisI GCNGC 2 cut(s) 6, 215
BlsI GCNGC 2 cut(s) 7, 216
Bme1390I CCNGG 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 294
BsaAI YACGTR 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 260
BsiSI CCGG 2 cut(s) 276, 293
BslI CCNNNNNNNGG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 5 cut(s) 41, 103, 154, 309, 322
BspACI CCGC 3 cut(s) 214, 231, 263
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 3 cut(s) 49, 98, 317
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 5 cut(s) 41, 103, 154, 309, 322
BssSI CACGAG 2 cut(s) 27, 222
Bst2BI CACGAG 2 cut(s) 27, 222
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 311
BstBAI YACGTR 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 338
BstDSI CCRYGG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 5 cut(s) 44, 106, 157, 312, 325
BstMBI GATC 5 cut(s) 41, 103, 154, 309, 322
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 304
BstSNI TACGTA 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 107
BtsCI GGATG 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 50
CviAII CATG 1 cut(s) 87
CviJI RGCY 2 cut(s) 5, 336
CviKI_1 RGCY 2 cut(s) 5, 336
CviQI GTAC 1 cut(s) 50
DpnI GATC 5 cut(s) 43, 105, 156, 311, 324
DpnII GATC 5 cut(s) 41, 103, 154, 309, 322
DraI TTTAAA 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco105I TACGTA 1 cut(s) 53
FaeI CATG 1 cut(s) 90
FaiI YATR 4 cut(s) 20, 88, 254, 306
FatI CATG 1 cut(s) 86
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 2 cut(s) 6, 215
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 2 cut(s) 6, 215
GluI GCNGC 2 cut(s) 6, 215
HapII CCGG 2 cut(s) 276, 293
Hin1II CATG 1 cut(s) 90
HinfI GANTC 2 cut(s) 220, 283
HpaII CCGG 2 cut(s) 276, 293
Hpy188I TCNGA 4 cut(s) 41, 124, 249, 330
Hpy188III TCNNGA 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 5 cut(s) 41, 103, 154, 309, 322
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 2 cut(s) 289, 306
MaeII ACGT 1 cut(s) 52
MalI GATC 5 cut(s) 43, 105, 156, 311, 324
MboI GATC 5 cut(s) 41, 103, 154, 309, 322
MboII GAAGA 3 cut(s) 137, 220, 328
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 2 cut(s) 98, 118
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 3 cut(s) 23, 107, 262
MseI TTAA 1 cut(s) 144
MspI CCGG 2 cut(s) 276, 293
MspR9I CCNGG 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 294
NdeII GATC 5 cut(s) 41, 103, 154, 309, 322
NlaIII CATG 1 cut(s) 90
NlaIV GGNNCC 1 cut(s) 34
NmeAIII GCCGAG 1 cut(s) 239
NspI RCATGY 1 cut(s) 90
PciI ACATGT 1 cut(s) 86
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 2 cut(s) 7, 216
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Ppu21I YACGTR 1 cut(s) 53
PscI ACATGT 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 34
PsuI RGATCY 1 cut(s) 309
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 2 cut(s) 6, 215
Sau3AI GATC 5 cut(s) 41, 103, 154, 309, 322
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 1 cut(s) 260
SetI ASST 2 cut(s) 55, 273
SfcI CTRYAG 1 cut(s) 304
SnaBI TACGTA 1 cut(s) 53
Sse9I AATT 2 cut(s) 98, 118
SsiI CCGC 3 cut(s) 214, 231, 263
StyD4I CCNGG 1 cut(s) 292
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 1 cut(s) 55
TaqI TCGA 3 cut(s) 63, 102, 286
TaqII GACCGA 1 cut(s) 147
TasI AATT 2 cut(s) 98, 118
TauI GCSGC 1 cut(s) 217
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 1 cut(s) 5
TspGWI ACGGA 1 cut(s) 124
XceI RCATGY 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.