FvH4_3g02450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011062
Physical Location & Seq
Reverse (-)
1223868 .. 1224263
396 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02450.t1

Sequence Viewer

Length: 396 bp
ATGGAGTATAAAGCCAGCACCACAGAAGCTAAGTTTCCTGAGACTCAAACAATGGCTGCAGCAGCTCCAATTGCAATAGGCACGCGAGGCACCGTGGGATCTCTTGTCAGGAGGGAGATTGAGTACTTTGGTAAGCTAGAGCTAGACCGACGTGTAAGCTCAGTGAAGCCTCAAGGGAAAATGGGGGAGATGAGTTCCAAGAATTGTAATTCTAGCAGGCCTAGTTTCTGGTTCTTGAGGATGACATGGAAATGGAAGAGGCAAAGATCTGGCAGCAGGGGGTTCTTATCAAGCATGTGTTCTGCAGCTGAAGTTGTAGAAAACAATAGGTTAAATGGCATTCCTGGGTTCAATTACAGGACCCTCAAGGATGATATGAACAACTTGCGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.85

Weight (kDa)

10.14

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21780 AT4G21780 AT4G21780
fragaria_vesca FvH4_3g02450
malus_domestica MD10G1317900.v1.1
prunus_persica Prupe.4G023900_v2.0.a1 Prupe.4G209300_v2.0.a1
pyrus_communis pycom03g15660 pycom05g31240 pycom10g26940
rosa_chinensis RchiOBHm_Chr5g0003701
rosa_laevigata RLG00000031167 RLG00000033841
rosa_multiflora Rmu_sc0000500.1_g000002
rosa_rugosa Rorug04G0406000 Rorug05G0171700
rosa_samantha Rh5BG031400 Rh5CG035500 Rh5DG032000
rosa_wichuraiana Rw5G003040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 89
AccII CGCG 1 cut(s) 85
AclWI GGATC 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 1 cut(s) 352
AjiI CACGTC 1 cut(s) 152
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 6 cut(s) 29, 65, 136, 142, 159, 308
AluI AGCT 6 cut(s) 29, 65, 136, 142, 159, 308
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 1 cut(s) 106
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 5 cut(s) 56, 59, 62, 273, 305
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 360
AvaII GGWCC 1 cut(s) 360
BanI GGYRCC 1 cut(s) 89
BbvI GCAGC 5 cut(s) 43, 71, 74, 285, 317
BciT130I CCWGG 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 4 cut(s) 137, 143, 213, 222
BfmI CTRYAG 2 cut(s) 57, 303
BglII AGATCT 1 cut(s) 266
BisI GCNGC 5 cut(s) 57, 60, 63, 274, 306
BlsI GCNGC 5 cut(s) 58, 61, 64, 275, 307
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 360
BmgBI CACGTC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 360
BmiI GGNNCC 2 cut(s) 91, 362
BmrFI CCNGG 1 cut(s) 345
BpuEI CTTGAG 3 cut(s) 156, 256, 350
BsaJI CCNNGG 2 cut(s) 93, 344
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 2 cut(s) 93, 344
BseGI GGATG 2 cut(s) 246, 376
BseMII CTCAG 2 cut(s) 30, 174
BseXI GCAGC 5 cut(s) 43, 71, 74, 285, 317
Bsh1236I CGCG 1 cut(s) 85
BshFI GGCC 1 cut(s) 220
BshNI GGYRCC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 339
BsnI GGCC 1 cut(s) 220
Bsp143I GATC 2 cut(s) 98, 266
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 2 cut(s) 31, 173
BspFNI CGCG 1 cut(s) 85
BspLI GGNNCC 2 cut(s) 91, 362
BspMAI CTGCAG 2 cut(s) 61, 307
BspPI GGATC 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 93, 344
BssMI GATC 2 cut(s) 98, 266
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 16, 83, 218
BstDEI CTNAG 3 cut(s) 30, 39, 160
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 246, 376
BstFNI CGCG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 2 cut(s) 101, 269
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 2 cut(s) 98, 266
BstMWI GCNNNNNNNGC 3 cut(s) 62, 71, 87
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 343
BstSFI CTRYAG 2 cut(s) 57, 303
BstUI CGCG 1 cut(s) 85
BstV1I GCAGC 5 cut(s) 43, 71, 74, 285, 317
BstX2I RGATCY 2 cut(s) 98, 266
BstYI RGATCY 2 cut(s) 98, 266
BsuRI GGCC 1 cut(s) 220
BtgI CCRYGG 1 cut(s) 93
BtrI CACGTC 1 cut(s) 152
BtsCI GGATG 2 cut(s) 246, 376
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 3 cut(s) 16, 83, 218
CfoI GCGC 1 cut(s) 390
Cfr13I GGNCC 1 cut(s) 360
Csp6I GTAC 1 cut(s) 124
CviAII CATG 2 cut(s) 246, 295
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 3 cut(s) 30, 39, 160
DpnI GATC 2 cut(s) 100, 268
DpnII GATC 2 cut(s) 98, 266
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Eco147I AGGCCT 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 330
EcoO109I RGGNCCY 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 343
FaeI CATG 2 cut(s) 249, 298
FaiI YATR 4 cut(s) 9, 247, 296, 377
FatI CATG 2 cut(s) 245, 294
Fnu4HI GCNGC 5 cut(s) 57, 60, 63, 274, 306
FokI GGATG 2 cut(s) 253, 383
Fsp4HI GCNGC 5 cut(s) 57, 60, 63, 274, 306
FspBI CTAG 4 cut(s) 137, 143, 213, 222
FspI TGCGCA 1 cut(s) 389
GlaI GCGC 1 cut(s) 389
GluI GCNGC 5 cut(s) 57, 60, 63, 274, 306
HaeIII GGCC 1 cut(s) 220
HhaI GCGC 1 cut(s) 390
Hin1II CATG 2 cut(s) 249, 298
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 1 cut(s) 43
Hpy188III TCNNGA 3 cut(s) 38, 109, 235
Hpy99I CGWCG 1 cut(s) 153
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 3 cut(s) 59, 74, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 71, 87
HpyF3I CTNAG 3 cut(s) 30, 39, 160
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 2 cut(s) 249, 298
HspAI GCGC 1 cut(s) 388
Kzo9I GATC 2 cut(s) 98, 266
LmnI GCTCC 1 cut(s) 70
Lsp1109I GCAGC 5 cut(s) 43, 71, 74, 285, 317
MaeI CTAG 4 cut(s) 137, 143, 213, 222
MaeII ACGT 1 cut(s) 151
MalI GATC 2 cut(s) 100, 268
MboI GATC 2 cut(s) 98, 266
MboII GAAGA 1 cut(s) 268
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 2 cut(s) 98, 266
MluCI AATT 4 cut(s) 69, 202, 208, 352
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 6 cut(s) 80, 105, 180, 231, 252, 374
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 250
MspA1I CMGCKG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 345
MunI CAATTG 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 339
MvaI CCWGG 1 cut(s) 345
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 3 cut(s) 62, 71, 87
NdeII GATC 2 cut(s) 98, 266
NlaIII CATG 2 cut(s) 249, 298
NlaIV GGNNCC 2 cut(s) 91, 362
NsbI TGCGCA 1 cut(s) 389
NspI RCATGY 1 cut(s) 298
PceI AGGCCT 1 cut(s) 220
PctI GAATGC 1 cut(s) 339
PkrI GCNGC 5 cut(s) 58, 61, 64, 275, 307
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 2 cut(s) 91, 362
PspPI GGNCC 1 cut(s) 360
PspPPI RGGWCCY 1 cut(s) 360
PstI CTGCAG 2 cut(s) 61, 307
PsuI RGATCY 2 cut(s) 98, 266
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 250
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 5 cut(s) 57, 60, 63, 274, 306
Sau3AI GATC 2 cut(s) 98, 266
Sau96I GGNCC 1 cut(s) 360
ScaI AGTACT 1 cut(s) 125
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 345
SetI ASST 8 cut(s) 31, 67, 138, 144, 154, 161, 310, 332
SfcI CTRYAG 2 cut(s) 57, 303
SinI GGWCC 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 250
SmlI CTYRAG 3 cut(s) 171, 235, 365
SmoI CTYRAG 3 cut(s) 171, 235, 365
Sse9I AATT 4 cut(s) 69, 202, 208, 352
SseBI AGGCCT 1 cut(s) 220
SspMI CTAG 4 cut(s) 137, 143, 213, 222
StuI AGGCCT 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 343
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 154
TaqII GACCGA 1 cut(s) 162
TasI AATT 4 cut(s) 69, 202, 208, 352
TatI WGTACW 1 cut(s) 123
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 1 cut(s) 168
TseI GCWGC 5 cut(s) 56, 59, 62, 273, 305
TspDTI ATGAA 1 cut(s) 392
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 360
XceI RCATGY 1 cut(s) 298
XspI CTAG 4 cut(s) 137, 143, 213, 222
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.