pycom10g26940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011062
Physical Location & Seq
Forward (+)
28087374 .. 28087802
429 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g26940.1

Sequence Viewer

Length: 429 bp
ATGCAGTATAAAGCCGGCAGCGCAACAGAAACCAGCTTCCCTCAAACAAATCCCATGGCTGCAGCAACAGCTCCGATCGCTATAGGCACGCGAGGCACTGTTGGATCGCTTGTCCTGAAGGAGATCGAGTACTTCAGCAAGATTGAGCTCGACCGGCGTGGTAGCTCAAGCTCAATGAAGCCTCTGGGACAGATACTTGGCTTGACTTCTGGCGGTAGTGGTAGTCATTGTGGCAAGTCTGGTTTGCGGCTATTGTTAATGGCATGGAGGAGGAGGAAGAGGAGAGGCGGCAGCGGCAGTGGCAGCGGCAGAGGGTTCTTGTCAAGTATGTGTTTTGCTGCAGAAGTTGCGGAAACCAATCGGCGACATGGGGTTCCCGGGTTTAGTTACAAGATCCTCAAGGATGACATGAACAACTTGAGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.09

Weight (kDa)

10.39

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21780 AT4G21780 AT4G21780
fragaria_vesca FvH4_3g02450
malus_domestica MD10G1317900.v1.1
prunus_persica Prupe.4G023900_v2.0.a1 Prupe.4G209300_v2.0.a1
pyrus_communis pycom03g15660 pycom05g31240 pycom10g26940
rosa_chinensis RchiOBHm_Chr5g0003701
rosa_laevigata RLG00000031167 RLG00000033841
rosa_multiflora Rmu_sc0000500.1_g000002
rosa_rugosa Rorug04G0406000 Rorug05G0171700
rosa_samantha Rh5BG031400 Rh5CG035500 Rh5DG032000
rosa_wichuraiana Rw5G003040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 91
AciI CCGC 6 cut(s) 213, 247, 288, 294, 306, 350
AclWI GGATC 2 cut(s) 112, 388
AcuI CTGAAG 2 cut(s) 118, 137
AfaI GTAC 1 cut(s) 131
AluBI AGCT 5 cut(s) 36, 71, 148, 165, 171
AluI AGCT 5 cut(s) 36, 71, 148, 165, 171
Alw21I GWGCWC 1 cut(s) 150
AlwI GGATC 2 cut(s) 112, 388
Ama87I CYCGRG 1 cut(s) 377
ApeKI GCWGC 6 cut(s) 18, 59, 62, 291, 303, 338
AspLEI GCGC 1 cut(s) 23
AsuC2I CCSGG 2 cut(s) 378, 379
AvaI CYCGRG 1 cut(s) 377
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 6 cut(s) 30, 46, 74, 303, 315, 325
BcnI CCSGG 2 cut(s) 378, 379
BfmI CTRYAG 3 cut(s) 60, 81, 339
BmcAI AGTACT 1 cut(s) 131
Bme1390I CCNGG 2 cut(s) 378, 379
BmeT110I CYCGRG 1 cut(s) 377
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 2 cut(s) 378, 379
BpuEI CTTGAG 2 cut(s) 151, 383
BpuMI CCSGG 2 cut(s) 378, 379
BsaJI CCNNGG 2 cut(s) 54, 377
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bse118I RCCGGY 2 cut(s) 14, 153
BseDI CCNNGG 2 cut(s) 54, 377
BseGI GGATG 1 cut(s) 409
BseRI GAGGAG 3 cut(s) 283, 286, 295
BseXI GCAGC 6 cut(s) 30, 46, 74, 303, 315, 325
Bsh1236I CGCG 1 cut(s) 91
Bsh1285I CGRYCG 2 cut(s) 78, 154
BsiEI CGRYCG 2 cut(s) 78, 154
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 3 cut(s) 15, 154, 378
BslFI GGGAC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 201
BsoBI CYCGRG 1 cut(s) 377
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 4 cut(s) 75, 104, 123, 393
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 6 cut(s) 213, 247, 288, 294, 306, 350
BspFNI CGCG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 375
BspMAI CTGCAG 2 cut(s) 64, 343
BspPI GGATC 2 cut(s) 112, 388
BsrFI RCCGGY 2 cut(s) 14, 153
BssAI RCCGGY 2 cut(s) 14, 153
BssECI CCNNGG 2 cut(s) 54, 377
BssMI GATC 4 cut(s) 75, 104, 123, 393
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 272
BstAPI GCANNNNNTGC 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 16, 89
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 409
BstFNI CGCG 1 cut(s) 91
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 4 cut(s) 78, 107, 126, 396
BstMBI GATC 4 cut(s) 75, 104, 123, 393
BstMCI CGRYCG 2 cut(s) 78, 154
BstMWI GCNNNNNNNGC 9 cut(s) 20, 68, 77, 93, 154, 294, 300, 303, 347
BstSCI CCNGG 2 cut(s) 376, 377
BstSFI CTRYAG 3 cut(s) 60, 81, 339
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 6 cut(s) 30, 46, 74, 303, 315, 325
BstX2I RGATCY 1 cut(s) 393
BstYI RGATCY 1 cut(s) 393
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 409
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 96, 304
Cac8I GCNNGC 2 cut(s) 16, 89
CfoI GCGC 1 cut(s) 23
Cfr10I RCCGGY 2 cut(s) 14, 153
Cfr9I CCCGGG 1 cut(s) 377
Csp6I GTAC 1 cut(s) 130
CviAII CATG 4 cut(s) 55, 264, 368, 409
CviQI GTAC 1 cut(s) 130
DpnI GATC 4 cut(s) 77, 106, 125, 395
DpnII GATC 4 cut(s) 75, 104, 123, 393
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 118, 137
Eco88I CYCGRG 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 4 cut(s) 58, 267, 371, 412
FaiI YATR 7 cut(s) 9, 56, 83, 265, 329, 369, 410
FaqI GGGAC 1 cut(s) 201
FatI CATG 4 cut(s) 54, 263, 367, 408
FokI GGATG 1 cut(s) 416
FriOI GRGCYC 1 cut(s) 150
GlaI GCGC 1 cut(s) 22
HapII CCGG 3 cut(s) 15, 154, 378
HhaI GCGC 1 cut(s) 23
Hin1II CATG 4 cut(s) 58, 267, 371, 412
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HpaII CCGG 3 cut(s) 15, 154, 378
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 3 cut(s) 4, 62, 341
HpyF10VI GCNNNNNNNGC 9 cut(s) 20, 68, 77, 93, 154, 294, 300, 303, 347
Hsp92II CATG 4 cut(s) 58, 267, 371, 412
HspAI GCGC 1 cut(s) 21
KroI GCCGGC 1 cut(s) 14
KroNI GCCGGC 1 cut(s) 16
Kzo9I GATC 4 cut(s) 75, 104, 123, 393
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 8 cut(s) 28, 46, 128, 167, 170, 195, 225, 391
Lsp1109I GCAGC 6 cut(s) 30, 46, 74, 303, 315, 325
MaeIII GTNAC 1 cut(s) 386
MalI GATC 4 cut(s) 77, 106, 125, 395
MboI GATC 4 cut(s) 75, 104, 123, 393
MboII GAAGA 1 cut(s) 289
MflI RGATCY 1 cut(s) 393
MhlI GDGCHC 1 cut(s) 150
MmeI TCCRAC 1 cut(s) 82
MroNI GCCGGC 1 cut(s) 14
MseI TTAA 2 cut(s) 257, 427
MspA1I CMGCKG 2 cut(s) 294, 306
MspI CCGG 3 cut(s) 15, 154, 378
MspR9I CCNGG 2 cut(s) 378, 379
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 9 cut(s) 20, 68, 77, 93, 154, 294, 300, 303, 347
NaeI GCCGGC 1 cut(s) 16
NciI CCSGG 2 cut(s) 378, 379
NcoI CCATGG 1 cut(s) 54
NdeII GATC 4 cut(s) 75, 104, 123, 393
NgoMIV GCCGGC 1 cut(s) 14
NlaIII CATG 4 cut(s) 58, 267, 371, 412
NlaIV GGNNCC 1 cut(s) 375
PdiI GCCGGC 1 cut(s) 16
Ple19I CGATCG 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 375
PstI CTGCAG 2 cut(s) 64, 343
PsuI RGATCY 1 cut(s) 393
PvuI CGATCG 1 cut(s) 78
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 257, 427
Sau3AI GATC 4 cut(s) 75, 104, 123, 393
ScaI AGTACT 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 378, 379
SduI GDGCHC 1 cut(s) 150
SetI ASST 5 cut(s) 38, 73, 150, 167, 173
SfcI CTRYAG 3 cut(s) 60, 81, 339
SmaI CCCGGG 1 cut(s) 379
SmlI CTYRAG 3 cut(s) 166, 398, 418
SmoI CTYRAG 3 cut(s) 166, 398, 418
SsiI CCGC 6 cut(s) 213, 247, 288, 294, 306, 350
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 376, 377
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 126, 150
TatI WGTACW 1 cut(s) 129
TauI GCSGC 4 cut(s) 250, 291, 297, 309
Tru1I TTAA 2 cut(s) 257, 427
Tru9I TTAA 2 cut(s) 257, 427
TscAI CASTG 2 cut(s) 103, 304
TseI GCWGC 6 cut(s) 18, 59, 62, 291, 303, 338
TspDTI ATGAA 2 cut(s) 191, 425
TspMI CCCGGG 1 cut(s) 377
TspRI CASTG 2 cut(s) 103, 304
XmaI CCCGGG 1 cut(s) 377
ZrmI AGTACT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.