MD10G1317900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0011062
Physical Location & Seq
Forward (+)
40095706 .. 40096086
381 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1317900.v1.1.491

Sequence Viewer

Length: 381 bp
ATGGCTGCAGCAACAGCTCCGATCGCTATAGGCACGCGAGGCACGGTTGGATCGCTTGTCAGGAAGGAGATCGAGTACTTCAGCAAGCTTGAGCTCGACCGGCGTGGTAGCTCAAGCTCAATGAAGCCTCTGGGACAGATACTCGGCTTGACTTCTGGCGGTAGTGGCAGTCATTGCGGCAAGTCTGGTTTCCGGCTATTGTTAATGGCATGGAGGAGGAGGAAGAGGAGAGGCGGCAGCGGCAGCGGCAGCAGCAGCGGTAGAGGGTTCTTGTCAAGTATGTGTTTTGCCGCAGAAGTTGCGGAAACCAATCGGCGAAATGGGGTTCCCGGGTTTAGTTACAAGATCCTCAAGGATGACATGAACAACTTGAGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.38

Weight (kDa)

10.92

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21780 AT4G21780 AT4G21780
fragaria_vesca FvH4_3g02450
malus_domestica MD10G1317900.v1.1
prunus_persica Prupe.4G023900_v2.0.a1 Prupe.4G209300_v2.0.a1
pyrus_communis pycom03g15660 pycom05g31240 pycom10g26940
rosa_chinensis RchiOBHm_Chr5g0003701
rosa_laevigata RLG00000031167 RLG00000033841
rosa_multiflora Rmu_sc0000500.1_g000002
rosa_rugosa Rorug04G0406000 Rorug05G0171700
rosa_samantha Rh5BG031400 Rh5CG035500 Rh5DG032000
rosa_wichuraiana Rw5G003040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 37
AciI CCGC 8 cut(s) 159, 177, 234, 240, 246, 258, 291, 302
AclWI GGATC 2 cut(s) 58, 340
AcuI CTGAAG 1 cut(s) 64
AfaI GTAC 1 cut(s) 77
AluBI AGCT 5 cut(s) 17, 88, 94, 111, 117
AluI AGCT 5 cut(s) 17, 88, 94, 111, 117
Alw21I GWGCWC 1 cut(s) 96
AlwI GGATC 2 cut(s) 58, 340
Ama87I CYCGRG 1 cut(s) 329
ApeKI GCWGC 7 cut(s) 5, 8, 237, 243, 249, 252, 255
AsuC2I CCSGG 2 cut(s) 330, 331
AvaI CYCGRG 1 cut(s) 329
BanII GRGCYC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 6 cut(s) 20, 249, 255, 261, 264, 267
BcnI CCSGG 2 cut(s) 330, 331
BfmI CTRYAG 2 cut(s) 6, 27
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 2 cut(s) 330, 331
BmeT110I CYCGRG 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 2 cut(s) 330, 331
BpuEI CTTGAG 3 cut(s) 97, 110, 335
BpuMI CCSGG 2 cut(s) 330, 331
BsaJI CCNNGG 1 cut(s) 329
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bse118I RCCGGY 1 cut(s) 99
Bse3DI GCAATG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 1 cut(s) 361
BseMI GCAATG 1 cut(s) 172
BseRI GAGGAG 3 cut(s) 229, 232, 241
BseXI GCAGC 6 cut(s) 20, 249, 255, 261, 264, 267
Bsh1236I CGCG 1 cut(s) 37
Bsh1285I CGRYCG 2 cut(s) 24, 100
BsiEI CGRYCG 2 cut(s) 24, 100
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 3 cut(s) 100, 193, 330
BslFI GGGAC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 4 cut(s) 21, 50, 69, 345
BspACI CCGC 8 cut(s) 159, 177, 234, 240, 246, 258, 291, 302
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 327
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 2 cut(s) 58, 340
BsrDI GCAATG 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 4 cut(s) 21, 50, 69, 345
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 218
BstAPI GCANNNNNTGC 2 cut(s) 174, 299
BstC8I GCNNGC 2 cut(s) 35, 86
BstF5I GGATG 1 cut(s) 361
BstFNI CGCG 1 cut(s) 37
BstKTI GATC 4 cut(s) 24, 53, 72, 348
BstMBI GATC 4 cut(s) 21, 50, 69, 345
BstMCI CGRYCG 2 cut(s) 24, 100
BstSCI CCNGG 2 cut(s) 328, 329
BstSFI CTRYAG 2 cut(s) 6, 27
BstUI CGCG 1 cut(s) 37
BstV1I GCAGC 6 cut(s) 20, 249, 255, 261, 264, 267
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BtsCI GGATG 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 35, 86
Cfr10I RCCGGY 1 cut(s) 99
Cfr9I CCCGGG 1 cut(s) 329
Csp6I GTAC 1 cut(s) 76
CviAII CATG 2 cut(s) 210, 361
CviJI RGCY 9 cut(s) 5, 17, 88, 94, 111, 117, 127, 147, 196
CviKI_1 RGCY 9 cut(s) 5, 17, 88, 94, 111, 117, 127, 147, 196
CviQI GTAC 1 cut(s) 76
DpnI GATC 4 cut(s) 23, 52, 71, 347
DpnII GATC 4 cut(s) 21, 50, 69, 345
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 329
EcoICRI GAGCTC 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 2 cut(s) 213, 364
FaiI YATR 4 cut(s) 29, 211, 281, 362
FaqI GGGAC 1 cut(s) 147
FatI CATG 2 cut(s) 209, 360
FokI GGATG 1 cut(s) 368
FriOI GRGCYC 1 cut(s) 96
HapII CCGG 3 cut(s) 100, 193, 330
Hin1II CATG 2 cut(s) 213, 364
HindIII AAGCTT 1 cut(s) 86
HpaII CCGG 3 cut(s) 100, 193, 330
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 8
Hsp92II CATG 2 cut(s) 213, 364
Kzo9I GATC 4 cut(s) 21, 50, 69, 345
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 7 cut(s) 46, 113, 116, 141, 171, 206, 343
Lsp1109I GCAGC 6 cut(s) 20, 249, 255, 261, 264, 267
MaeIII GTNAC 1 cut(s) 338
MalI GATC 4 cut(s) 23, 52, 71, 347
MboI GATC 4 cut(s) 21, 50, 69, 345
MboII GAAGA 1 cut(s) 235
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 9 cut(s) 32, 138, 207, 210, 213, 219, 224, 257, 359
MseI TTAA 2 cut(s) 203, 379
MspA1I CMGCKG 3 cut(s) 240, 246, 258
MspI CCGG 3 cut(s) 100, 193, 330
MspR9I CCNGG 2 cut(s) 330, 331
MvnI CGCG 1 cut(s) 37
NciI CCSGG 2 cut(s) 330, 331
NdeII GATC 4 cut(s) 21, 50, 69, 345
NlaIII CATG 2 cut(s) 213, 364
NlaIV GGNNCC 1 cut(s) 327
NmeAIII GCCGAG 1 cut(s) 123
Ple19I CGATCG 1 cut(s) 24
Psp124BI GAGCTC 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 327
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 345
PvuI CGATCG 1 cut(s) 24
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SacI GAGCTC 1 cut(s) 96
SaqAI TTAA 2 cut(s) 203, 379
Sau3AI GATC 4 cut(s) 21, 50, 69, 345
ScaI AGTACT 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 330, 331
SduI GDGCHC 1 cut(s) 96
SetI ASST 5 cut(s) 19, 90, 96, 113, 119
SfcI CTRYAG 2 cut(s) 6, 27
SmaI CCCGGG 1 cut(s) 331
SmlI CTYRAG 4 cut(s) 89, 112, 350, 370
SmoI CTYRAG 4 cut(s) 89, 112, 350, 370
SsiI CCGC 8 cut(s) 159, 177, 234, 240, 246, 258, 291, 302
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 2 cut(s) 328, 329
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 2 cut(s) 72, 96
TatI WGTACW 1 cut(s) 75
TauI GCSGC 5 cut(s) 180, 237, 243, 249, 293
Tru1I TTAA 2 cut(s) 203, 379
Tru9I TTAA 2 cut(s) 203, 379
TseI GCWGC 7 cut(s) 5, 8, 237, 243, 249, 252, 255
TspDTI ATGAA 2 cut(s) 137, 377
TspMI CCCGGG 1 cut(s) 329
XmaI CCCGGG 1 cut(s) 329
ZrmI AGTACT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.