Prupe.4G023900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011062
Physical Location & Seq
Reverse (-)
1130734 .. 1131087
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G023900.1

Sequence Viewer

Length: 354 bp
ATGGCTGCACCAGCTCCAATTGCAATAGGCACGCGAGGCACTGTAGGTTCGCTTGTCAGGAAGGAGATCGAGTATTTCAGCAATCTTGAGCTCGACCGGCCGCGTGGAAACTCAAGCTCGAGGAAGCCTCAGGGACAAATAGTTGACATGACTGCCAGCAGTTGCACTCATTCTAGCAAGCCTAGCTTCTGGTTCTTGATAATGACCTGGAAAAGGAAGAAGAGGAGAAGCAGCAGAAGATTCTTATCAAGCATATGCTCTGCTACAAAAGTTGCAGAAACCAATCGGCTAAATGGCATTCCTGGGTTTAATTACAGGATCCTCAAGGATGACATGAACAACTTGAGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.15

Weight (kDa)

10.73

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21780 AT4G21780 AT4G21780
fragaria_vesca FvH4_3g02450
malus_domestica MD10G1317900.v1.1
prunus_persica Prupe.4G023900_v2.0.a1 Prupe.4G209300_v2.0.a1
pyrus_communis pycom03g15660 pycom05g31240 pycom10g26940
rosa_chinensis RchiOBHm_Chr5g0003701
rosa_laevigata RLG00000031167 RLG00000033841
rosa_multiflora Rmu_sc0000500.1_g000002
rosa_rugosa Rorug04G0406000 Rorug05G0171700
rosa_samantha Rh5BG031400 Rh5CG035500 Rh5DG032000
rosa_wichuraiana Rw5G003040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 34, 103
AciI CCGC 1 cut(s) 101
AclWI GGATC 2 cut(s) 313, 326
AcoI YGGCCR 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 213
AjnI CCWGG 2 cut(s) 206, 301
AluBI AGCT 4 cut(s) 14, 91, 117, 186
AluI AGCT 4 cut(s) 14, 91, 117, 186
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 2 cut(s) 313, 326
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 5, 231
AvaI CYCGRG 1 cut(s) 118
AxyI CCTNAGG 1 cut(s) 129
BamHI GGATCC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 243
BciT130I CCWGG 2 cut(s) 208, 303
BfaI CTAG 2 cut(s) 174, 183
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 3 cut(s) 6, 101, 232
BlsI GCNGC 3 cut(s) 7, 102, 233
Bme1390I CCNGG 2 cut(s) 208, 303
BmeT110I CYCGRG 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 320
BmrFI CCNGG 2 cut(s) 208, 303
BplI GAGNNNNNCTC 2 cut(s) 112, 144
BpuEI CTTGAG 3 cut(s) 97, 107, 308
BsaBI GATNNNNATC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 302
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse118I RCCGGY 1 cut(s) 96
Bse21I CCTNAGG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 244
BseBI CCWGG 2 cut(s) 208, 303
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 238
BseX3I CGGCCG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 243
Bsh1236I CGCG 2 cut(s) 34, 103
Bsh1285I CGRYCG 2 cut(s) 97, 101
BshFI GGCC 1 cut(s) 100
BsiEI CGRYCG 2 cut(s) 97, 101
BsiHKAI GWGCWC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 147
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 66, 318
BspACI CCGC 1 cut(s) 101
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 2 cut(s) 34, 103
BspLI GGNNCC 1 cut(s) 320
BspPI GGATC 2 cut(s) 313, 326
BsrFI RCCGGY 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 2 cut(s) 66, 318
Bst2UI CCWGG 2 cut(s) 208, 303
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 215
BstC8I GCNNGC 3 cut(s) 32, 157, 179
BstDEI CTNAG 1 cut(s) 129
BstENI CCTNNNNNAGG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 2 cut(s) 34, 103
BstKTI GATC 2 cut(s) 69, 321
BstMBI GATC 2 cut(s) 66, 318
BstMCI CGRYCG 2 cut(s) 97, 101
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 36, 97, 183
BstNI CCWGG 2 cut(s) 208, 303
BstSCI CCNGG 2 cut(s) 206, 301
BstSFI CTRYAG 1 cut(s) 42
BstUI CGCG 2 cut(s) 34, 103
BstV1I GCAGC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
BstZI CGGCCG 1 cut(s) 98
Bsu36I CCTNAGG 1 cut(s) 129
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 3 cut(s) 32, 157, 179
Cfr10I RCCGGY 1 cut(s) 96
CviAII CATG 2 cut(s) 148, 334
CviJI RGCY 9 cut(s) 5, 14, 91, 100, 117, 127, 181, 186, 289
CviKI_1 RGCY 9 cut(s) 5, 14, 91, 100, 117, 127, 181, 186, 289
DdeI CTNAG 1 cut(s) 129
DpnI GATC 2 cut(s) 68, 320
DpnII GATC 2 cut(s) 66, 318
EaeI YGGCCR 1 cut(s) 98
EagI CGGCCG 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 91
EclXI CGGCCG 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 93
Eco52I CGGCCG 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 211
EcoRII CCWGG 2 cut(s) 206, 301
EcoT38I GRGCYC 1 cut(s) 93
FaeI CATG 2 cut(s) 151, 337
FaiI YATR 4 cut(s) 149, 254, 256, 335
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FaqI GGGAC 1 cut(s) 147
FatI CATG 2 cut(s) 147, 333
FauNDI CATATG 1 cut(s) 254
Fnu4HI GCNGC 3 cut(s) 6, 101, 232
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 6, 101, 232
FspBI CTAG 2 cut(s) 174, 183
GluI GCNGC 3 cut(s) 6, 101, 232
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 97
Hin1II CATG 2 cut(s) 151, 337
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 1 cut(s) 240
HpaII CCGG 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 58, 86, 196
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 4 cut(s) 8, 23, 165, 275
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 36, 97, 183
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 2 cut(s) 151, 337
Kzo9I GATC 2 cut(s) 66, 318
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 1 cut(s) 243
MaeI CTAG 2 cut(s) 174, 183
MalI GATC 2 cut(s) 68, 320
MboI GATC 2 cut(s) 66, 318
MboII GAAGA 3 cut(s) 229, 232, 249
MfeI CAATTG 1 cut(s) 18
MflI RGATCY 1 cut(s) 318
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 2 cut(s) 18, 310
MnlI CCTC 5 cut(s) 29, 114, 138, 216, 332
MseI TTAA 2 cut(s) 309, 352
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 2 cut(s) 208, 303
MunI CAATTG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 297
MvaI CCWGG 2 cut(s) 208, 303
MvnI CGCG 2 cut(s) 34, 103
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 36, 97, 183
NdeI CATATG 1 cut(s) 254
NdeII GATC 2 cut(s) 66, 318
NlaIII CATG 2 cut(s) 151, 337
NlaIV GGNNCC 1 cut(s) 320
PaeR7I CTCGAG 1 cut(s) 118
PctI GAATGC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 240
PkrI GCNGC 3 cut(s) 7, 102, 233
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 2 cut(s) 206, 301
PspGI CCWGG 2 cut(s) 206, 301
PspN4I GGNNCC 1 cut(s) 320
PspXI VCTCGAGB 1 cut(s) 118
PsuI RGATCY 1 cut(s) 318
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 2 cut(s) 309, 352
SatI GCNGC 3 cut(s) 6, 101, 232
Sau3AI GATC 2 cut(s) 66, 318
ScrFI CCNGG 2 cut(s) 208, 303
SduI GDGCHC 1 cut(s) 93
SetI ASST 6 cut(s) 16, 49, 93, 119, 188, 209
SfcI CTRYAG 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 118
SlaI CTCGAG 1 cut(s) 118
SmlI CTYRAG 5 cut(s) 86, 112, 118, 323, 343
SmoI CTYRAG 5 cut(s) 86, 112, 118, 323, 343
Sse9I AATT 2 cut(s) 18, 310
SsiI CCGC 1 cut(s) 101
SspMI CTAG 2 cut(s) 174, 183
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 206, 301
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 3 cut(s) 69, 93, 119
TasI AATT 2 cut(s) 18, 310
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 2 cut(s) 309, 352
Tru9I TTAA 2 cut(s) 309, 352
TscAI CASTG 1 cut(s) 46
TseI GCWGC 2 cut(s) 5, 231
TspDTI ATGAA 1 cut(s) 350
TspRI CASTG 1 cut(s) 46
XagI CCTNNNNNAGG 1 cut(s) 211
XhoI CTCGAG 1 cut(s) 118
XspI CTAG 2 cut(s) 174, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.