pycom03g15660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0011062
Physical Location & Seq
Reverse (-)
16880132 .. 16880506
375 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g15660.1

Sequence Viewer

Length: 375 bp
ATGTATAAATCCGGCACTGTTGTCACCAGAGACACTGCAAAGATGGCGGCATATGCTCCTGTGGAAATAGGCACCAAGGGAACTGTTGGATCCCTCATAATGAGAGAAATCGAGCACTTCCGCCAGCTCGAACTAAGCAGCCGGTGTAGCTCGCGAAAGGCTCAGCCCCAACTCAAAGACATGGTTTCATCTACTAGTCATTTGAGACCGACTTTTGAATCAGTTATAAAAACACAAAAGAAGAAAAAGAGAGGCAGCAAGCTCCTACCAATTGTATGTTCTATGGTGGAAGTCTCGGAGAACAATCGACCAACTAGTATTTCTACATACAGTTACAGGAATCTAAGATCTGATGGGAAGAAATTGCCAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.85

Weight (kDa)

10.15

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21780 AT4G21780 AT4G21780
fragaria_vesca FvH4_3g02450
malus_domestica MD10G1317900.v1.1
prunus_persica Prupe.4G023900_v2.0.a1 Prupe.4G209300_v2.0.a1
pyrus_communis pycom03g15660 pycom05g31240 pycom10g26940
rosa_chinensis RchiOBHm_Chr5g0003701
rosa_laevigata RLG00000031167 RLG00000033841
rosa_multiflora Rmu_sc0000500.1_g000002
rosa_rugosa Rorug04G0406000 Rorug05G0171700
rosa_samantha Rh5BG031400 Rh5CG035500 Rh5DG032000
rosa_wichuraiana Rw5G003040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 71
AccII CGCG 1 cut(s) 154
AciI CCGC 2 cut(s) 47, 121
AclWI GGATC 2 cut(s) 84, 97
AgsI TTSAA 1 cut(s) 218
AhlI ACTAGT 2 cut(s) 194, 314
AjnI CCWGG 1 cut(s) 367
AjuI GAANNNNNNNTTGG 4 cut(s) 262, 294, 304, 336
AluBI AGCT 3 cut(s) 127, 150, 262
AluI AGCT 3 cut(s) 127, 150, 262
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 3 cut(s) 24, 199, 298
AlwI GGATC 2 cut(s) 84, 97
ApeKI GCWGC 2 cut(s) 138, 255
AsuHPI GGTGA 1 cut(s) 16
BamHI GGATCC 1 cut(s) 89
BanI GGYRCC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 150, 267
BccI CCATC 2 cut(s) 37, 347
BciT130I CCWGG 1 cut(s) 369
BcoDI GTCTC 3 cut(s) 24, 199, 298
BcuI ACTAGT 2 cut(s) 194, 314
BfaI CTAG 2 cut(s) 195, 315
BglII AGATCT 1 cut(s) 347
BisI GCNGC 3 cut(s) 48, 139, 256
BlpI GCTNAGC 1 cut(s) 162
BlsI GCNGC 3 cut(s) 49, 140, 257
Bme1390I CCNGG 1 cut(s) 369
BmiI GGNNCC 2 cut(s) 73, 91
BmrFI CCNGG 1 cut(s) 369
Bpu1102I GCTNAGC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 75
Bse118I RCCGGY 1 cut(s) 141
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 176
BseXI GCAGC 2 cut(s) 150, 267
Bsh1236I CGCG 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 2 cut(s) 12, 142
BsmAI GTCTC 3 cut(s) 24, 199, 298
Bso31I GGTCTC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 2 cut(s) 89, 347
Bsp1720I GCTNAGC 1 cut(s) 162
Bsp68I TCGCGA 1 cut(s) 154
BspACI CCGC 2 cut(s) 47, 121
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 1 cut(s) 154
BspLI GGNNCC 2 cut(s) 73, 91
BspPI GGATC 2 cut(s) 84, 97
BspT107I GGYRCC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 2 cut(s) 89, 347
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 3 cut(s) 19, 85, 332
BstC8I GCNNGC 3 cut(s) 125, 152, 260
BstDEI CTNAG 3 cut(s) 134, 162, 344
BstFNI CGCG 1 cut(s) 154
BstKTI GATC 2 cut(s) 92, 350
BstMAI GTCTC 3 cut(s) 24, 199, 298
BstMBI GATC 2 cut(s) 89, 347
BstMWI GCNNNNNNNGC 3 cut(s) 44, 53, 147
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 367
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 2 cut(s) 150, 267
BstX2I RGATCY 2 cut(s) 89, 347
BstYI RGATCY 2 cut(s) 89, 347
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 15, 33
BtuMI TCGCGA 1 cut(s) 154
Cac8I GCNNGC 3 cut(s) 125, 152, 260
Cfr10I RCCGGY 1 cut(s) 141
CviAII CATG 1 cut(s) 181
CviJI RGCY 6 cut(s) 127, 141, 150, 161, 166, 262
CviKI_1 RGCY 6 cut(s) 127, 141, 150, 161, 166, 262
DdeI CTNAG 3 cut(s) 134, 162, 344
DpnI GATC 2 cut(s) 91, 349
DpnII GATC 2 cut(s) 89, 347
EciI GGCGGA 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 1 cut(s) 184
FaiI YATR 9 cut(s) 6, 52, 54, 98, 182, 227, 277, 284, 328
FatI CATG 1 cut(s) 180
FauNDI CATATG 1 cut(s) 52
Fnu4HI GCNGC 3 cut(s) 48, 139, 256
Fsp4HI GCNGC 3 cut(s) 48, 139, 256
FspBI CTAG 2 cut(s) 195, 315
GluI GCNGC 3 cut(s) 48, 139, 256
HapII CCGG 2 cut(s) 12, 142
Hin1II CATG 1 cut(s) 184
HinfI GANTC 2 cut(s) 218, 340
HpaII CCGG 2 cut(s) 12, 142
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 298, 352
Hpy188III TCNNGA 1 cut(s) 153
HpyCH4III ACNGT 3 cut(s) 19, 85, 332
HpyCH4V TGCA 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 53, 147
HpyF3I CTNAG 3 cut(s) 134, 162, 344
Hsp92II CATG 1 cut(s) 184
Kzo9I GATC 2 cut(s) 89, 347
LmnI GCTCC 2 cut(s) 61, 267
LpnPI CCDG 7 cut(s) 25, 40, 72, 137, 155, 322, 354
Lsp1109I GCAGC 2 cut(s) 150, 267
MaeI CTAG 2 cut(s) 195, 315
MaeIII GTNAC 2 cut(s) 22, 332
MalI GATC 2 cut(s) 91, 349
MboI GATC 2 cut(s) 89, 347
MboII GAAGA 2 cut(s) 253, 370
MfeI CAATTG 1 cut(s) 270
MflI RGATCY 2 cut(s) 89, 347
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 2 cut(s) 270, 362
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 2 cut(s) 104, 245
MspI CCGG 2 cut(s) 12, 142
MspR9I CCNGG 1 cut(s) 369
MunI CAATTG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 369
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 3 cut(s) 44, 53, 147
NdeI CATATG 1 cut(s) 52
NdeII GATC 2 cut(s) 89, 347
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 2 cut(s) 73, 91
NmuCI GTSAC 1 cut(s) 22
NruI TCGCGA 1 cut(s) 154
PfeI GAWTC 2 cut(s) 218, 340
PkrI GCNGC 3 cut(s) 49, 140, 257
PsiI TTATAA 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 2 cut(s) 73, 91
PsuI RGATCY 2 cut(s) 89, 347
RruI TCGCGA 1 cut(s) 154
SatI GCNGC 3 cut(s) 48, 139, 256
Sau3AI GATC 2 cut(s) 89, 347
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 1 cut(s) 117
SetI ASST 4 cut(s) 129, 152, 264, 373
SpeI ACTAGT 2 cut(s) 194, 314
Sse9I AATT 2 cut(s) 270, 362
SsiI CCGC 2 cut(s) 47, 121
SspMI CTAG 2 cut(s) 195, 315
StyD4I CCNGG 1 cut(s) 367
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 3 cut(s) 19, 85, 332
TaqI TCGA 3 cut(s) 111, 129, 307
TaqII GACCGA 1 cut(s) 223
TasI AATT 2 cut(s) 270, 362
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 2 cut(s) 218, 340
TscAI CASTG 2 cut(s) 22, 40
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 2 cut(s) 138, 255
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 2 cut(s) 22, 40
XspI CTAG 2 cut(s) 195, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.