RLG00000033841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011062
Physical Location & Seq
Forward (+)
32858074 .. 32858515
442 bp
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UTR
Exon/CDS
Intron
RLM00000033841

Sequence Viewer

Length: 369 bp
ATGTCCCAAAGACAAAGCAATTTCCCCACCAAGACTGGACGGAAAACCACTTCTCTTCAGCCTCAAGCCGCCAACTCCCTTCCAGCAGACCAGAAGATGTATAAAACCAGAGCCATTGCCACAAGAGATGATGCCAAAATGGCAGCATATGCTCCTGCAGAAGTAGGCACCAGAGGCACAGTTGGATCCCTCATAATGAGAGAAATCGAGTACTTCAACCAGCTCGAATTAAGCAGTGAATGTAGCTCACATAAGCCTCAGCCCCCAATTACAAGTATTGTTTCCTCAAGTAGTCATTTGAGACCAAGTTTTGACTCAGTGACAACAATCGGCCAATTGGAATTTCTGTATACAGTTACAGGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.36

Weight (kDa)

9.2

Isoelectric Point (pI)

64.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21780 AT4G21780 AT4G21780
fragaria_vesca FvH4_3g02450
malus_domestica MD10G1317900.v1.1
prunus_persica Prupe.4G023900_v2.0.a1 Prupe.4G209300_v2.0.a1
pyrus_communis pycom03g15660 pycom05g31240 pycom10g26940
rosa_chinensis RchiOBHm_Chr5g0003701
rosa_laevigata RLG00000031167 RLG00000033841
rosa_multiflora Rmu_sc0000500.1_g000002
rosa_rugosa Rorug04G0406000 Rorug05G0171700
rosa_samantha Rh5BG031400 Rh5CG035500 Rh5DG032000
rosa_wichuraiana Rw5G003040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 350
AciI CCGC 1 cut(s) 69
AclWI GGATC 2 cut(s) 180, 193
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 1 cut(s) 212
AgsI TTSAA 1 cut(s) 217
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AluBI AGCT 2 cut(s) 223, 246
AluI AGCT 2 cut(s) 223, 246
Alw26I GTCTC 1 cut(s) 295
AlwI GGATC 2 cut(s) 180, 193
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 341
BamHI GGATCC 1 cut(s) 185
BanI GGYRCC 1 cut(s) 167
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 295
BfmI CTRYAG 1 cut(s) 156
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 2 cut(s) 69, 144
BlsI GCNGC 2 cut(s) 70, 145
BmcAI AGTACT 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 169, 187
BmsI GCATC 1 cut(s) 121
Bpu10I CCTNAGC 1 cut(s) 258
BpuEI CTTGAG 2 cut(s) 48, 271
BsaI GGTCTC 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 272, 330
BseNI ACTGG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 155
BshFI GGCC 1 cut(s) 333
BshNI GGYRCC 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 295
BsnI GGCC 1 cut(s) 333
Bso31I GGTCTC 1 cut(s) 295
Bsp143I GATC 1 cut(s) 185
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 333
BspCNI CTCAG 2 cut(s) 271, 329
BspLI GGNNCC 2 cut(s) 169, 187
BspMAI CTGCAG 1 cut(s) 160
BspPI GGATC 2 cut(s) 180, 193
BspT107I GGYRCC 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 114
BsrI ACTGG 1 cut(s) 40
BssMI GATC 1 cut(s) 185
BssNAI GTATAC 1 cut(s) 351
Bst1107I GTATAC 1 cut(s) 351
Bst4CI ACNGT 2 cut(s) 181, 355
Bst6I CTCTTC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 258, 316
BstKTI GATC 1 cut(s) 188
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 1 cut(s) 185
BstMWI GCNNNNNNNGC 3 cut(s) 140, 149, 174
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BstZ17I GTATAC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 333
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 2 cut(s) 241, 324
Csp6I GTAC 1 cut(s) 211
CviJI RGCY 8 cut(s) 61, 68, 113, 223, 246, 256, 262, 333
CviKI_1 RGCY 8 cut(s) 61, 68, 113, 223, 246, 256, 262, 333
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 2 cut(s) 258, 316
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 295
Eco57I CTGAAG 1 cut(s) 41
FaiI YATR 6 cut(s) 102, 148, 150, 194, 252, 351
FauNDI CATATG 1 cut(s) 148
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 2 cut(s) 69, 144
Fsp4HI GCNGC 2 cut(s) 69, 144
GluI GCNGC 2 cut(s) 69, 144
HaeIII GGCC 1 cut(s) 333
HinfI GANTC 2 cut(s) 314, 363
Hpy166II GTNNAC 1 cut(s) 351
Hpy8I GTNNAC 1 cut(s) 351
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 2 cut(s) 181, 355
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 149, 174
HpyF3I CTNAG 2 cut(s) 258, 316
Kzo9I GATC 1 cut(s) 185
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 8 cut(s) 21, 96, 104, 121, 168, 184, 233, 345
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 1 cut(s) 121
MaeIII GTNAC 2 cut(s) 319, 355
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MboII GAAGA 2 cut(s) 47, 106
MfeI CAATTG 1 cut(s) 335
MflI RGATCY 1 cut(s) 185
MluCI AATT 5 cut(s) 19, 227, 267, 335, 341
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 5 cut(s) 72, 167, 200, 267, 295
MseI TTAA 1 cut(s) 230
MunI CAATTG 1 cut(s) 335
MwoI GCNNNNNNNGC 3 cut(s) 140, 149, 174
NdeI CATATG 1 cut(s) 148
NdeII GATC 1 cut(s) 185
NlaIV GGNNCC 2 cut(s) 169, 187
NmuCI GTSAC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 2 cut(s) 70, 145
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 169, 187
PstI CTGCAG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 185
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 2 cut(s) 69, 144
Sau3AI GATC 1 cut(s) 185
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 1 cut(s) 308
SetI ASST 2 cut(s) 225, 248
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 156
SmlI CTYRAG 2 cut(s) 63, 286
SmoI CTYRAG 2 cut(s) 63, 286
Sse9I AATT 5 cut(s) 19, 227, 267, 335, 341
SsiI CCGC 1 cut(s) 69
TaaI ACNGT 2 cut(s) 181, 355
TaqI TCGA 2 cut(s) 207, 225
TasI AATT 5 cut(s) 19, 227, 267, 335, 341
TatI WGTACW 1 cut(s) 210
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 2 cut(s) 241, 324
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 319
TspGWI ACGGA 1 cut(s) 55
TspRI CASTG 2 cut(s) 241, 324
XapI RAATTY 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 350
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.