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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G21780 AT4G21780 AT4G21780 |
| fragaria_vesca | FvH4_3g02450 |
| malus_domestica | MD10G1317900.v1.1 |
| prunus_persica | Prupe.4G023900_v2.0.a1 Prupe.4G209300_v2.0.a1 |
| pyrus_communis | pycom03g15660 pycom05g31240 pycom10g26940 |
| rosa_chinensis | RchiOBHm_Chr5g0003701 |
| rosa_laevigata | RLG00000031167 RLG00000033841 |
| rosa_multiflora | Rmu_sc0000500.1_g000002 |
| rosa_rugosa | Rorug04G0406000 Rorug05G0171700 |
| rosa_samantha | Rh5BG031400 Rh5CG035500 Rh5DG032000 |
| rosa_wichuraiana | Rw5G003040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1279 |
| Acc36I | ACCTGC | 1 cut(s) | 1279 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1172, 2033, 2192 |
| AccBSI | CCGCTC | 1 cut(s) | 360 |
| AccI | GTMKAC | 1 cut(s) | 1034 |
| AccII | CGCG | 2 cut(s) | 1410, 1966 |
| AccIII | TCCGGA | 2 cut(s) | 200, 1069 |
| AciI | CCGC | 7 cut(s) | 62, 358, 722, 888, 1287, 1517, 1964 |
| AclWI | GGATC | 5 cut(s) | 602, 663, 866, 1332, 1986 |
| AcoI | YGGCCR | 2 cut(s) | 69, 2412 |
| AcsI | RAATTY | 5 cut(s) | 4, 865, 1699, 1765, 2158 |
| AfaI | GTAC | 7 cut(s) | 33, 42, 568, 1016, 1119, 2356, 2500 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 315, 1172, 1199, 2033, 2192, 2342, 2410 |
| AflIII | ACRYGT | 2 cut(s) | 28, 37 |
| AjiI | CACGTC | 1 cut(s) | 1838 |
| AjnI | CCWGG | 4 cut(s) | 1165, 1453, 2070, 2200 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2037, 2069 |
| AleI | CACNNNNGTG | 1 cut(s) | 2362 |
| Alw21I | GWGCWC | 2 cut(s) | 2026, 2517 |
| Alw26I | GTCTC | 7 cut(s) | 705, 840, 886, 927, 1621, 2044, 2224 |
| Alw44I | GTGCAC | 1 cut(s) | 2022 |
| AlwI | GGATC | 5 cut(s) | 602, 663, 866, 1332, 1986 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2254, 2324 |
| Ama87I | CYCGRG | 1 cut(s) | 2551 |
| Aor13HI | TCCGGA | 2 cut(s) | 200, 1069 |
| AoxI | GGCC | 3 cut(s) | 69, 801, 2412 |
| ApaLI | GTGCAC | 1 cut(s) | 2022 |
| ApoI | RAATTY | 5 cut(s) | 4, 865, 1699, 1765, 2158 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 347, 379 |
| AseI | ATTAAT | 1 cut(s) | 2529 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 384, 639, 1766 |
| AspLEI | GCGC | 3 cut(s) | 97, 218, 1410 |
| AspS9I | GGNCC | 4 cut(s) | 119, 355, 794, 1072 |
| AsuC2I | CCSGG | 2 cut(s) | 375, 2120 |
| AsuHPI | GGTGA | 7 cut(s) | 389, 593, 743, 967, 1730, 1793, 2157 |
| AsuII | TTCGAA | 1 cut(s) | 646 |
| AvaI | CYCGRG | 1 cut(s) | 2551 |
| AvaII | GGWCC | 4 cut(s) | 119, 355, 794, 1072 |
| BaeGI | GKGCMC | 1 cut(s) | 2026 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1018, 1050 |
| BbsI | GAAGAC | 4 cut(s) | 608, 762, 1323, 1856 |
| Bbv12I | GWGCWC | 2 cut(s) | 2026, 2517 |
| BccI | CCATC | 6 cut(s) | 273, 781, 785, 1458, 2426, 2441 |
| BceAI | ACGGC | 2 cut(s) | 56, 2427 |
| BciT130I | CCWGG | 4 cut(s) | 1167, 1455, 2072, 2202 |
| BciVI | GTATCC | 3 cut(s) | 415, 1912, 2161 |
| BclI | TGATCA | 1 cut(s) | 178 |
| BcnI | CCSGG | 2 cut(s) | 375, 2120 |
| BcoDI | GTCTC | 7 cut(s) | 705, 840, 886, 927, 1621, 2044, 2224 |
| BfaI | CTAG | 7 cut(s) | 21, 630, 1805, 1841, 2019, 2337, 2387 |
| BfmI | CTRYAG | 3 cut(s) | 453, 1035, 1494 |
| BfoI | RGCGCY | 1 cut(s) | 219 |
| BfuAI | ACCTGC | 1 cut(s) | 1279 |
| BfuI | GTATCC | 3 cut(s) | 415, 1912, 2161 |
| BglII | AGATCT | 1 cut(s) | 2095 |
| BlpI | GCTNAGC | 1 cut(s) | 54 |
| Bme1390I | CCNGG | 6 cut(s) | 375, 1167, 1455, 2072, 2120, 2202 |
| Bme18I | GGWCC | 4 cut(s) | 119, 355, 794, 1072 |
| BmeT110I | CYCGRG | 1 cut(s) | 2551 |
| BmgBI | CACGTC | 1 cut(s) | 1838 |
| BmgT120I | GGNCC | 4 cut(s) | 119, 355, 794, 1072 |
| BmiI | GGNNCC | 2 cut(s) | 817, 1074 |
| BmrFI | CCNGG | 6 cut(s) | 375, 1167, 1455, 2072, 2120, 2202 |
| BmrI | ACTGGG | 1 cut(s) | 1330 |
| BmsI | GCATC | 5 cut(s) | 262, 313, 1452, 1591, 1835 |
| BmuI | ACTGGG | 1 cut(s) | 1330 |
| BpiI | GAAGAC | 4 cut(s) | 608, 762, 1323, 1856 |
| BpmI | CTGGAG | 7 cut(s) | 72, 149, 1113, 1551, 2054, 2055, 2301 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1044, 2511 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 54 |
| Bpu14I | TTCGAA | 1 cut(s) | 646 |
| BpuEI | CTTGAG | 1 cut(s) | 2447 |
| BpuMI | CCSGG | 2 cut(s) | 375, 2120 |
| BsaBI | GATNNNNATC | 1 cut(s) | 153 |
| BsaI | GGTCTC | 1 cut(s) | 705 |
| BsaJI | CCNNGG | 4 cut(s) | 804, 2118, 2201, 2550 |
| BsaWI | WCCGGW | 4 cut(s) | 200, 328, 1069, 1199 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 924, 954 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 315, 1172, 1199, 2033, 2192, 2342, 2410 |
| Bse118I | RCCGGY | 3 cut(s) | 43, 67, 1289 |
| Bse1I | ACTGG | 5 cut(s) | 1325, 1780, 1885, 2318, 2541 |
| Bse3DI | GCAATG | 1 cut(s) | 398 |
| Bse8I | GATNNNNATC | 1 cut(s) | 153 |
| BseAI | TCCGGA | 2 cut(s) | 200, 1069 |
| BseBI | CCWGG | 4 cut(s) | 1167, 1455, 2072, 2202 |
| BseDI | CCNNGG | 4 cut(s) | 804, 2118, 2201, 2550 |
| BseGI | GGATG | 6 cut(s) | 274, 284, 625, 796, 1196, 2396 |
| BseJI | GATNNNNATC | 1 cut(s) | 153 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 315, 1172, 1199, 2033, 2192, 2342, 2410 |
| BseMI | GCAATG | 1 cut(s) | 398 |
| BseMII | CTCAG | 8 cut(s) | 45, 774, 1058, 1220, 1611, 1723, 2274, 2502 |
| BseNI | ACTGG | 5 cut(s) | 1325, 1780, 1885, 2318, 2541 |
| BseRI | GAGGAG | 4 cut(s) | 1116, 1137, 1483, 1637 |
| BseSI | GKGCMC | 1 cut(s) | 2026 |
| BseX3I | CGGCCG | 1 cut(s) | 69 |
| BsgI | GTGCAG | 2 cut(s) | 849, 1257 |
| Bsh1236I | CGCG | 2 cut(s) | 1410, 1966 |
| Bsh1285I | CGRYCG | 2 cut(s) | 72, 1964 |
| BshFI | GGCC | 3 cut(s) | 71, 803, 2414 |
| BsiEI | CGRYCG | 2 cut(s) | 72, 1964 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2026, 2517 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2551 |
| BsiSI | CCGG | 9 cut(s) | 44, 68, 201, 329, 375, 1070, 1200, 1290, 2120 |
| BslFI | GGGAC | 1 cut(s) | 721 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 315, 1172, 1199, 2033, 2192, 2342, 2410 |
| BsmAI | GTCTC | 7 cut(s) | 705, 840, 886, 927, 1621, 2044, 2224 |
| BsmBI | CGTCTC | 1 cut(s) | 886 |
| BsmFI | GGGAC | 1 cut(s) | 721 |
| BsmI | GAATGC | 1 cut(s) | 1726 |
| BsnI | GGCC | 3 cut(s) | 71, 803, 2414 |
| Bso31I | GGTCTC | 1 cut(s) | 705 |
| BsoBI | CYCGRG | 1 cut(s) | 2551 |
| Bsp119I | TTCGAA | 1 cut(s) | 646 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2026, 2517 |
| Bsp13I | TCCGGA | 2 cut(s) | 200, 1069 |
| Bsp1407I | TGTACA | 2 cut(s) | 31, 2354 |
| Bsp143I | GATC | 9 cut(s) | 178, 571, 607, 655, 871, 1309, 1324, 1978, 2095 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 54 |
| BspACI | CCGC | 7 cut(s) | 62, 358, 722, 888, 1287, 1517, 1964 |
| BspANI | GGCC | 3 cut(s) | 71, 803, 2414 |
| BspCNI | CTCAG | 8 cut(s) | 46, 775, 1057, 1219, 1612, 1722, 2273, 2503 |
| BspEI | TCCGGA | 2 cut(s) | 200, 1069 |
| BspFNI | CGCG | 2 cut(s) | 1410, 1966 |
| BspHI | TCATGA | 1 cut(s) | 256 |
| BspLI | GGNNCC | 2 cut(s) | 817, 1074 |
| BspMAI | CTGCAG | 1 cut(s) | 457 |
| BspMI | ACCTGC | 1 cut(s) | 1279 |
| BspPI | GGATC | 5 cut(s) | 602, 663, 866, 1332, 1986 |
| BspQI | GCTCTTC | 1 cut(s) | 1716 |
| BspT104I | TTCGAA | 1 cut(s) | 646 |
| BspTNI | GGTCTC | 1 cut(s) | 705 |
| BsrBI | CCGCTC | 1 cut(s) | 360 |
| BsrDI | GCAATG | 1 cut(s) | 398 |
| BsrFI | RCCGGY | 3 cut(s) | 43, 67, 1289 |
| BsrGI | TGTACA | 2 cut(s) | 31, 2354 |
| BsrI | ACTGG | 5 cut(s) | 1325, 1780, 1885, 2318, 2541 |
| BssAI | RCCGGY | 3 cut(s) | 43, 67, 1289 |
| BssECI | CCNNGG | 4 cut(s) | 804, 2118, 2201, 2550 |
| BssMI | GATC | 9 cut(s) | 178, 571, 607, 655, 871, 1309, 1324, 1978, 2095 |
| Bst2UI | CCWGG | 4 cut(s) | 1167, 1455, 2072, 2202 |
| Bst4CI | ACNGT | 4 cut(s) | 162, 1019, 1644, 2110 |
| Bst6I | CTCTTC | 3 cut(s) | 1346, 1716, 2475 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2030 |
| BstAUI | TGTACA | 2 cut(s) | 31, 2354 |
| BstBI | TTCGAA | 1 cut(s) | 646 |
| BstC8I | GCNNGC | 1 cut(s) | 69 |
| BstDSI | CCRYGG | 1 cut(s) | 804 |
| BstF5I | GGATG | 6 cut(s) | 274, 284, 625, 796, 1196, 2396 |
| BstFNI | CGCG | 2 cut(s) | 1410, 1966 |
| BstH2I | RGCGCY | 1 cut(s) | 219 |
| BstHHI | GCGC | 3 cut(s) | 97, 218, 1410 |
| BstKTI | GATC | 9 cut(s) | 181, 574, 610, 658, 874, 1312, 1327, 1981, 2098 |
| BstMAI | GTCTC | 7 cut(s) | 705, 840, 886, 927, 1621, 2044, 2224 |
| BstMBI | GATC | 9 cut(s) | 178, 571, 607, 655, 871, 1309, 1324, 1978, 2095 |
| BstMCI | CGRYCG | 2 cut(s) | 72, 1964 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 64, 1820, 1877, 2030 |
| BstNI | CCWGG | 4 cut(s) | 1167, 1455, 2072, 2202 |
| BstNSI | RCATGY | 3 cut(s) | 32, 414, 1577 |
| BstSCI | CCNGG | 6 cut(s) | 373, 1165, 1453, 2070, 2118, 2200 |
| BstSFI | CTRYAG | 3 cut(s) | 453, 1035, 1494 |
| BstSLI | GKGCMC | 1 cut(s) | 2026 |
| BstUI | CGCG | 2 cut(s) | 1410, 1966 |
| BstV2I | GAAGAC | 4 cut(s) | 608, 762, 1323, 1856 |
| BstX2I | RGATCY | 2 cut(s) | 1978, 2095 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1956 |
| BstYI | RGATCY | 2 cut(s) | 1978, 2095 |
| BstZI | CGGCCG | 1 cut(s) | 69 |
| BsuI | GTATCC | 3 cut(s) | 415, 1912, 2161 |
| BsuRI | GGCC | 3 cut(s) | 71, 803, 2414 |
| BtgI | CCRYGG | 1 cut(s) | 804 |
| BtrI | CACGTC | 1 cut(s) | 1838 |
| BtsCI | GGATG | 6 cut(s) | 274, 284, 625, 796, 1196, 2396 |
| BtsI | GCAGTG | 1 cut(s) | 837 |
| BtsIMutI | CAGTG | 1 cut(s) | 837 |
| BveI | ACCTGC | 1 cut(s) | 1279 |
| Cac8I | GCNNGC | 1 cut(s) | 69 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2254, 2324 |
| CciI | TCATGA | 1 cut(s) | 256 |
| CfoI | GCGC | 3 cut(s) | 97, 218, 1410 |
| Cfr10I | RCCGGY | 3 cut(s) | 43, 67, 1289 |
| Cfr13I | GGNCC | 4 cut(s) | 119, 355, 794, 1072 |
| CseI | GACGC | 1 cut(s) | 1986 |
| Csp6I | GTAC | 7 cut(s) | 32, 41, 567, 1015, 1118, 2355, 2499 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1569, 1604, 1759, 1794 |
| CviAII | CATG | 7 cut(s) | 29, 212, 257, 411, 1077, 1237, 1574 |
| CviQI | GTAC | 7 cut(s) | 32, 41, 567, 1015, 1118, 2355, 2499 |
| DpnI | GATC | 9 cut(s) | 180, 573, 609, 657, 873, 1311, 1326, 1980, 2097 |
| DpnII | GATC | 9 cut(s) | 178, 571, 607, 655, 871, 1309, 1324, 1978, 2095 |
| DraI | TTTAAA | 2 cut(s) | 445, 1942 |
| EaeI | YGGCCR | 2 cut(s) | 69, 2412 |
| EagI | CGGCCG | 1 cut(s) | 69 |
| Eam1104I | CTCTTC | 3 cut(s) | 1346, 1716, 2475 |
| EarI | CTCTTC | 3 cut(s) | 1346, 1716, 2475 |
| EclXI | CGGCCG | 1 cut(s) | 69 |
| Eco31I | GGTCTC | 1 cut(s) | 705 |
| Eco32I | GATATC | 1 cut(s) | 1989 |
| Eco47I | GGWCC | 4 cut(s) | 119, 355, 794, 1072 |
| Eco52I | CGGCCG | 1 cut(s) | 69 |
| Eco88I | CYCGRG | 1 cut(s) | 2551 |
| EcoRI | GAATTC | 1 cut(s) | 2158 |
| EcoRII | CCWGG | 4 cut(s) | 1165, 1453, 2070, 2200 |
| EcoRV | GATATC | 1 cut(s) | 1989 |
| Esp3I | CGTCTC | 1 cut(s) | 886 |
| FaeI | CATG | 7 cut(s) | 32, 215, 260, 414, 1080, 1240, 1577 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1289, 1321, 1492, 1524 |
| FaqI | GGGAC | 1 cut(s) | 721 |
| FatI | CATG | 7 cut(s) | 28, 211, 256, 410, 1076, 1236, 1573 |
| FbaI | TGATCA | 1 cut(s) | 178 |
| FblI | GTMKAC | 1 cut(s) | 1034 |
| FokI | GGATG | 6 cut(s) | 281, 291, 632, 803, 1183, 2403 |
| FspBI | CTAG | 7 cut(s) | 21, 630, 1805, 1841, 2019, 2337, 2387 |
| GlaI | GCGC | 3 cut(s) | 96, 217, 1409 |
| GsuI | CTGGAG | 7 cut(s) | 72, 149, 1113, 1551, 2054, 2055, 2301 |
| HaeII | RGCGCY | 1 cut(s) | 219 |
| HaeIII | GGCC | 3 cut(s) | 71, 803, 2414 |
| HapII | CCGG | 9 cut(s) | 44, 68, 201, 329, 375, 1070, 1200, 1290, 2120 |
| HgaI | GACGC | 1 cut(s) | 1986 |
| HhaI | GCGC | 3 cut(s) | 97, 218, 1410 |
| Hin1II | CATG | 7 cut(s) | 32, 215, 260, 414, 1080, 1240, 1577 |
| Hin6I | GCGC | 3 cut(s) | 95, 216, 1408 |
| HinP1I | GCGC | 3 cut(s) | 95, 216, 1408 |
| HincII | GTYRAC | 1 cut(s) | 26 |
| HindII | GTYRAC | 1 cut(s) | 26 |
| HindIII | AAGCTT | 4 cut(s) | 1303, 2292, 2310, 2423 |
| HpaII | CCGG | 9 cut(s) | 44, 68, 201, 329, 375, 1070, 1200, 1290, 2120 |
| HphI | GGTGA | 7 cut(s) | 389, 593, 743, 967, 1730, 1793, 2157 |
| Hpy99I | CGWCG | 1 cut(s) | 1376 |
| HpyAV | CCTTC | 8 cut(s) | 269, 610, 650, 1433, 1547, 1853, 2151, 2178 |
| HpyCH4III | ACNGT | 4 cut(s) | 162, 1019, 1644, 2110 |
| HpyCH4IV | ACGT | 6 cut(s) | 37, 183, 261, 879, 1116, 1837 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 64, 1820, 1877, 2030 |
| HpySE526I | ACGT | 6 cut(s) | 37, 183, 261, 879, 1116, 1837 |
| Hsp92II | CATG | 7 cut(s) | 32, 215, 260, 414, 1080, 1240, 1577 |
| HspAI | GCGC | 3 cut(s) | 95, 216, 1408 |
| Kpn2I | TCCGGA | 2 cut(s) | 200, 1069 |
| KroI | GCCGGC | 1 cut(s) | 67 |
| KroNI | GCCGGC | 1 cut(s) | 69 |
| Ksp22I | TGATCA | 1 cut(s) | 178 |
| Kzo9I | GATC | 9 cut(s) | 178, 571, 607, 655, 871, 1309, 1324, 1978, 2095 |
| LguI | GCTCTTC | 1 cut(s) | 1716 |
| LmnI | GCTCC | 2 cut(s) | 365, 1405 |
| LweI | GCATC | 5 cut(s) | 262, 313, 1452, 1591, 1835 |
| MaeI | CTAG | 7 cut(s) | 21, 630, 1805, 1841, 2019, 2337, 2387 |
| MaeII | ACGT | 6 cut(s) | 37, 183, 261, 879, 1116, 1837 |
| MaeIII | GTNAC | 4 cut(s) | 1229, 1367, 1653, 1682 |
| MalI | GATC | 9 cut(s) | 180, 573, 609, 657, 873, 1311, 1326, 1980, 2097 |
| MbiI | CCGCTC | 1 cut(s) | 360 |
| MboI | GATC | 9 cut(s) | 178, 571, 607, 655, 871, 1309, 1324, 1978, 2095 |
| MfeI | CAATTG | 2 cut(s) | 171, 1659 |
| MflI | RGATCY | 2 cut(s) | 1978, 2095 |
| MhlI | GDGCHC | 2 cut(s) | 2026, 2517 |
| MlyI | GAGTC | 7 cut(s) | 227, 734, 743, 1363, 1934, 2046, 2191 |
| MroI | TCCGGA | 2 cut(s) | 200, 1069 |
| MroNI | GCCGGC | 1 cut(s) | 67 |
| MroXI | GAANNNNTTC | 3 cut(s) | 384, 639, 1766 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2362, 2389 |
| MspI | CCGG | 9 cut(s) | 44, 68, 201, 329, 375, 1070, 1200, 1290, 2120 |
| MspR9I | CCNGG | 6 cut(s) | 375, 1167, 1455, 2072, 2120, 2202 |
| MunI | CAATTG | 2 cut(s) | 171, 1659 |
| Mva1269I | GAATGC | 1 cut(s) | 1726 |
| MvaI | CCWGG | 4 cut(s) | 1167, 1455, 2072, 2202 |
| MvnI | CGCG | 2 cut(s) | 1410, 1966 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 64, 1820, 1877, 2030 |
| NaeI | GCCGGC | 1 cut(s) | 69 |
| NciI | CCSGG | 2 cut(s) | 375, 2120 |
| NdeII | GATC | 9 cut(s) | 178, 571, 607, 655, 871, 1309, 1324, 1978, 2095 |
| NgoMIV | GCCGGC | 1 cut(s) | 67 |
| NlaIII | CATG | 7 cut(s) | 32, 215, 260, 414, 1080, 1240, 1577 |
| NlaIV | GGNNCC | 2 cut(s) | 817, 1074 |
| NmeAIII | GCCGAG | 1 cut(s) | 2251 |
| NmuCI | GTSAC | 1 cut(s) | 1682 |
| NspI | RCATGY | 3 cut(s) | 32, 414, 1577 |
| NspV | TTCGAA | 1 cut(s) | 646 |
| OliI | CACNNNNGTG | 1 cut(s) | 2362 |
| PagI | TCATGA | 1 cut(s) | 256 |
| PaqCI | CACCTGC | 1 cut(s) | 1279 |
| PciI | ACATGT | 1 cut(s) | 28 |
| PciSI | GCTCTTC | 1 cut(s) | 1716 |
| PctI | GAATGC | 1 cut(s) | 1726 |
| PdiI | GCCGGC | 1 cut(s) | 69 |
| PdmI | GAANNNNTTC | 3 cut(s) | 384, 639, 1766 |
| PfeI | GAWTC | 7 cut(s) | 149, 197, 289, 635, 776, 997, 2557 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1172, 2033, 2192 |
| PfoI | TCCNGGA | 1 cut(s) | 1165 |
| PleI | GAGTC | 7 cut(s) | 227, 733, 742, 1362, 1933, 2045, 2190 |
| PpsI | GAGTC | 7 cut(s) | 227, 733, 742, 1362, 1933, 2045, 2190 |
| PscI | ACATGT | 1 cut(s) | 28 |
| PshBI | ATTAAT | 1 cut(s) | 2529 |
| Psp6I | CCWGG | 4 cut(s) | 1165, 1453, 2070, 2200 |
| PspGI | CCWGG | 4 cut(s) | 1165, 1453, 2070, 2200 |
| PspN4I | GGNNCC | 2 cut(s) | 817, 1074 |
| PspPI | GGNCC | 4 cut(s) | 119, 355, 794, 1072 |
| PstI | CTGCAG | 1 cut(s) | 457 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2254, 2324 |
| PsuI | RGATCY | 2 cut(s) | 1978, 2095 |
| RsaI | GTAC | 7 cut(s) | 33, 42, 568, 1016, 1119, 2356, 2500 |
| RsaNI | GTAC | 7 cut(s) | 32, 41, 567, 1015, 1118, 2355, 2499 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2362, 2389 |
| SapI | GCTCTTC | 1 cut(s) | 1716 |
| Sau3AI | GATC | 9 cut(s) | 178, 571, 607, 655, 871, 1309, 1324, 1978, 2095 |
| Sau96I | GGNCC | 4 cut(s) | 119, 355, 794, 1072 |
| SchI | GAGTC | 7 cut(s) | 227, 734, 743, 1363, 1934, 2046, 2191 |
| ScrFI | CCNGG | 6 cut(s) | 375, 1167, 1455, 2072, 2120, 2202 |
| SduI | GDGCHC | 2 cut(s) | 2026, 2517 |
| SfaNI | GCATC | 5 cut(s) | 262, 313, 1452, 1591, 1835 |
| SfcI | CTRYAG | 3 cut(s) | 453, 1035, 1494 |
| SfuI | TTCGAA | 1 cut(s) | 646 |
| SinI | GGWCC | 4 cut(s) | 119, 355, 794, 1072 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2362, 2389 |
| SmlI | CTYRAG | 1 cut(s) | 2426 |
| SmoI | CTYRAG | 1 cut(s) | 2426 |
| SsiI | CCGC | 7 cut(s) | 62, 358, 722, 888, 1287, 1517, 1964 |
| SspI | AATATT | 2 cut(s) | 678, 1585 |
| SspMI | CTAG | 7 cut(s) | 21, 630, 1805, 1841, 2019, 2337, 2387 |
| StyD4I | CCNGG | 6 cut(s) | 373, 1165, 1453, 2070, 2118, 2200 |
| TaaI | ACNGT | 4 cut(s) | 162, 1019, 1644, 2110 |
| TaiI | ACGT | 6 cut(s) | 40, 186, 264, 882, 1119, 1840 |
| TaqI | TCGA | 3 cut(s) | 187, 646, 1390 |
| TaqII | GACCGA | 1 cut(s) | 2459 |
| TatI | WGTACW | 2 cut(s) | 31, 2354 |
| TauI | GCSGC | 2 cut(s) | 64, 1289 |
| TfiI | GAWTC | 7 cut(s) | 149, 197, 289, 635, 776, 997, 2557 |
| TscAI | CASTG | 1 cut(s) | 837 |
| TseFI | GTSAC | 1 cut(s) | 1682 |
| Tsp45I | GTSAC | 1 cut(s) | 1682 |
| TspGWI | ACGGA | 3 cut(s) | 821, 1636, 1937 |
| TspRI | CASTG | 1 cut(s) | 837 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1172, 2033, 2192 |
| VneI | GTGCAC | 1 cut(s) | 2022 |
| VpaK11BI | GGWCC | 4 cut(s) | 119, 355, 794, 1072 |
| VspI | ATTAAT | 1 cut(s) | 2529 |
| XapI | RAATTY | 5 cut(s) | 4, 865, 1699, 1765, 2158 |
| XceI | RCATGY | 3 cut(s) | 32, 414, 1577 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1461 |
| XmiI | GTMKAC | 1 cut(s) | 1034 |
| XmnI | GAANNNNTTC | 3 cut(s) | 384, 639, 1766 |
| XspI | CTAG | 7 cut(s) | 21, 630, 1805, 1841, 2019, 2337, 2387 |