Rh5BG031400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011062
Physical Location & Seq
Reverse (-)
2209620 .. 2210012
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG031400.1

Sequence Viewer

Length: 393 bp
ATGGAGTATAAAGCCAGCACCACAGAAGCCAAGTTTCCTGAGACTCGAAAAATGGCTGCAACAGCTCCAGTTGCAATAGGCACGCGAGGCACTGTGGGATCTCTTGTCAGGAGGGAGATTGAGTACTTTGGTAAGCTTGAGCCAGACCGGCGTGGAAGCTCAGTGAAGCCCCGGGGGAAAATGGCGGACATGAGTTCCAGGAATTGTGATTCTAGCAGGCCTAGTTTCTGGTTCTTGAGGATGACCTGGAAATGGAAGAGGCAAAGAGGGAGCAGGAGGTTCTTATCAAACATATGTTCTGCGGCGGAAGTTGTAGAAAACAATCGGCTAAATGGCATTCCTGGGTTCAATTATAGGTCCCTCAAGGATGATATGAACAACTTGAGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.86

Weight (kDa)

10.42

Isoelectric Point (pI)

59.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21780 AT4G21780 AT4G21780
fragaria_vesca FvH4_3g02450
malus_domestica MD10G1317900.v1.1
prunus_persica Prupe.4G023900_v2.0.a1 Prupe.4G209300_v2.0.a1
pyrus_communis pycom03g15660 pycom05g31240 pycom10g26940
rosa_chinensis RchiOBHm_Chr5g0003701
rosa_laevigata RLG00000031167 RLG00000033841
rosa_multiflora Rmu_sc0000500.1_g000002
rosa_rugosa Rorug04G0406000 Rorug05G0171700
rosa_samantha Rh5BG031400 Rh5CG035500 Rh5DG032000
rosa_wichuraiana Rw5G003040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 85
AciI CCGC 3 cut(s) 185, 302, 305
AclWI GGATC 1 cut(s) 106
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 1 cut(s) 349
AjnI CCWGG 3 cut(s) 197, 245, 340
AluBI AGCT 3 cut(s) 65, 136, 159
AluI AGCT 3 cut(s) 65, 136, 159
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 1 cut(s) 106
Ama87I CYCGRG 1 cut(s) 171
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 357
AsuC2I CCSGG 2 cut(s) 172, 173
AvaI CYCGRG 1 cut(s) 171
AvaII GGWCC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 43
BciT130I CCWGG 3 cut(s) 199, 247, 342
BcnI CCSGG 2 cut(s) 172, 173
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 2 cut(s) 213, 222
BglI GCCNNNNNGGC 1 cut(s) 148
BisI GCNGC 2 cut(s) 57, 303
BlsI GCNGC 2 cut(s) 58, 304
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 5 cut(s) 172, 173, 199, 247, 342
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 5 cut(s) 172, 173, 199, 247, 342
BpmI CTGGAG 1 cut(s) 51
BpuEI CTTGAG 3 cut(s) 158, 256, 347
BpuMI CCSGG 2 cut(s) 172, 173
BsaJI CCNNGG 4 cut(s) 170, 171, 172, 341
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse118I RCCGGY 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 68
BseBI CCWGG 3 cut(s) 199, 247, 342
BseDI CCNNGG 4 cut(s) 170, 171, 172, 341
BseGI GGATG 2 cut(s) 246, 373
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 30, 174
BseNI ACTGG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 85
BshFI GGCC 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 171
BsiSI CCGG 2 cut(s) 148, 172
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 343
BsmI GAATGC 1 cut(s) 336
BsnI GGCC 1 cut(s) 220
BsoBI CYCGRG 1 cut(s) 171
Bsp143I GATC 1 cut(s) 98
BspACI CCGC 3 cut(s) 185, 302, 305
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 2 cut(s) 31, 173
BspFNI CGCG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 359
BspPI GGATC 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 147
BsrI ACTGG 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 147
BssECI CCNNGG 4 cut(s) 170, 171, 172, 341
BssMI GATC 1 cut(s) 98
Bst2UI CCWGG 3 cut(s) 199, 247, 342
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 16, 83, 218
BstDEI CTNAG 2 cut(s) 39, 160
BstF5I GGATG 2 cut(s) 246, 373
BstFNI CGCG 1 cut(s) 85
BstKTI GATC 1 cut(s) 101
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 98
BstMWI GCNNNNNNNGC 4 cut(s) 62, 71, 87, 148
BstNI CCWGG 3 cut(s) 199, 247, 342
BstSCI CCNGG 5 cut(s) 170, 171, 197, 245, 340
BstUI CGCG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
BsuRI GGCC 1 cut(s) 220
BtsCI GGATG 2 cut(s) 246, 373
BtsIMutI CAGTG 2 cut(s) 90, 168
Cac8I GCNNGC 3 cut(s) 16, 83, 218
Cfr10I RCCGGY 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 357
Cfr9I CCCGGG 1 cut(s) 171
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 190
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 2 cut(s) 39, 160
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
EciI GGCGGA 2 cut(s) 200, 320
Eco147I AGGCCT 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 171
EcoO109I RGGNCCY 1 cut(s) 357
EcoRII CCWGG 3 cut(s) 197, 245, 340
FaeI CATG 1 cut(s) 193
FaiI YATR 6 cut(s) 9, 191, 293, 295, 354, 374
FaqI GGGAC 1 cut(s) 343
FatI CATG 1 cut(s) 189
FauNDI CATATG 1 cut(s) 293
Fnu4HI GCNGC 2 cut(s) 57, 303
FokI GGATG 2 cut(s) 253, 380
Fsp4HI GCNGC 2 cut(s) 57, 303
FspBI CTAG 2 cut(s) 213, 222
GluI GCNGC 2 cut(s) 57, 303
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 1 cut(s) 220
HapII CCGG 2 cut(s) 148, 172
Hin1II CATG 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 2 cut(s) 43, 209
HpaII CCGG 2 cut(s) 148, 172
Hpy188III TCNNGA 3 cut(s) 38, 109, 235
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 59, 74
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 71, 87, 148
HpyF3I CTNAG 2 cut(s) 39, 160
Hsp92II CATG 1 cut(s) 193
Kzo9I GATC 1 cut(s) 98
LmnI GCTCC 2 cut(s) 70, 270
Lsp1109I GCAGC 1 cut(s) 43
MaeI CTAG 2 cut(s) 213, 222
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 1 cut(s) 268
MflI RGATCY 1 cut(s) 98
MluCI AATT 2 cut(s) 202, 349
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 7 cut(s) 80, 105, 231, 252, 260, 270, 371
MspI CCGG 2 cut(s) 148, 172
MspR9I CCNGG 5 cut(s) 172, 173, 199, 247, 342
Mva1269I GAATGC 1 cut(s) 336
MvaI CCWGG 3 cut(s) 199, 247, 342
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 4 cut(s) 62, 71, 87, 148
NciI CCSGG 2 cut(s) 172, 173
NdeI CATATG 1 cut(s) 293
NdeII GATC 1 cut(s) 98
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 359
PceI AGGCCT 1 cut(s) 220
PctI GAATGC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 197
PkrI GCNGC 2 cut(s) 58, 304
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 357
Psp6I CCWGG 3 cut(s) 197, 245, 340
PspGI CCWGG 3 cut(s) 197, 245, 340
PspN4I GGNNCC 1 cut(s) 359
PspPI GGNCC 1 cut(s) 357
PspPPI RGGWCCY 1 cut(s) 357
PsuI RGATCY 1 cut(s) 98
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 2 cut(s) 57, 303
Sau3AI GATC 1 cut(s) 98
Sau96I GGNCC 1 cut(s) 357
ScaI AGTACT 1 cut(s) 125
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 5 cut(s) 172, 173, 199, 247, 342
SetI ASST 6 cut(s) 67, 138, 161, 248, 281, 359
SinI GGWCC 1 cut(s) 357
SmaI CCCGGG 1 cut(s) 173
SmlI CTYRAG 4 cut(s) 137, 235, 362, 382
SmoI CTYRAG 4 cut(s) 137, 235, 362, 382
Sse9I AATT 2 cut(s) 202, 349
SseBI AGGCCT 1 cut(s) 220
SsiI CCGC 3 cut(s) 185, 302, 305
SspMI CTAG 2 cut(s) 213, 222
StuI AGGCCT 1 cut(s) 220
StyD4I CCNGG 5 cut(s) 170, 171, 197, 245, 340
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 46
TasI AATT 2 cut(s) 202, 349
TatI WGTACW 1 cut(s) 123
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 1 cut(s) 209
TscAI CASTG 2 cut(s) 97, 168
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 389
TspMI CCCGGG 1 cut(s) 171
TspRI CASTG 2 cut(s) 97, 168
VpaK11BI GGWCC 1 cut(s) 357
XmaI CCCGGG 1 cut(s) 171
XspI CTAG 2 cut(s) 213, 222
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.