pycom05g31240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011062
Physical Location & Seq
Forward (+)
31063859 .. 31064293
435 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g31240.1

Sequence Viewer

Length: 435 bp
ATGCAGTATAAAGCCAGCAGCACAGCAGAAACCAACTTCCCTCAAACAAGTCCAATGGCTGCAGCAACAGCTCCGATCGCAGTAGGCACGCGAGGCACGGTTGGATCGCTTGTCAGGAGGGAGATCGAGTACTTCAGCAAGCTTGAGCTCGACCGGCGTGGAAGCTCAAGCTCAATGAAGCCTCTGGGACAAATACTCGGCTTCACTTCTGGCGGTAGCGGTGCTCATTGTAGCAAGTCTAGTTTCCGGCTCTTGGTAATGACATGGAGGAGGAGGAAGAGGAGAGGCAGCAGTGACAGCGGCAGCGGCAGCGGCAGAGGGTTCTTGGCAAACATGTGTTTTGCTGCTGAAGTTGCGGAAACCAATCGGCAAAACTGGATTCCTGGGTTCAATTACAAGATCCTCAAGGATGACATGAACAACTTGAGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.67

Weight (kDa)

10.33

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21780 AT4G21780 AT4G21780
fragaria_vesca FvH4_3g02450
malus_domestica MD10G1317900.v1.1
prunus_persica Prupe.4G023900_v2.0.a1 Prupe.4G209300_v2.0.a1
pyrus_communis pycom03g15660 pycom05g31240 pycom10g26940
rosa_chinensis RchiOBHm_Chr5g0003701
rosa_laevigata RLG00000031167 RLG00000033841
rosa_multiflora Rmu_sc0000500.1_g000002
rosa_rugosa Rorug04G0406000 Rorug05G0171700
rosa_samantha Rh5BG031400 Rh5CG035500 Rh5DG032000
rosa_wichuraiana Rw5G003040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 91
AciI CCGC 6 cut(s) 213, 219, 300, 306, 312, 356
AclWI GGATC 2 cut(s) 112, 394
AcuI CTGAAG 2 cut(s) 118, 369
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 253
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 1 cut(s) 391
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 5 cut(s) 71, 142, 148, 165, 171
AluI AGCT 5 cut(s) 71, 142, 148, 165, 171
Alw21I GWGCWC 2 cut(s) 150, 226
AlwI GGATC 2 cut(s) 112, 394
ApeKI GCWGC 7 cut(s) 18, 59, 62, 288, 303, 309, 344
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 2 cut(s) 150, 226
BbvI GCAGC 7 cut(s) 30, 46, 74, 300, 315, 321, 331
BciT130I CCWGG 1 cut(s) 384
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 60
BmcAI AGTACT 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 384
BpuEI CTTGAG 3 cut(s) 151, 164, 389
BsaJI CCNNGG 1 cut(s) 383
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse118I RCCGGY 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 380
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 1 cut(s) 253
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 3 cut(s) 283, 286, 295
BseXI GCAGC 7 cut(s) 30, 46, 74, 300, 315, 321, 331
Bsh1236I CGCG 1 cut(s) 91
Bsh1285I CGRYCG 2 cut(s) 78, 154
BsiEI CGRYCG 2 cut(s) 78, 154
BsiHKAI GWGCWC 2 cut(s) 150, 226
BsiSI CCGG 2 cut(s) 154, 247
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 201
Bsp1286I GDGCHC 2 cut(s) 150, 226
Bsp143I GATC 4 cut(s) 75, 104, 123, 399
BspACI CCGC 6 cut(s) 213, 219, 300, 306, 312, 356
BspFNI CGCG 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 64
BspPI GGATC 2 cut(s) 112, 394
BsrFI RCCGGY 1 cut(s) 153
BsrI ACTGG 1 cut(s) 380
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 4 cut(s) 75, 104, 123, 399
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 3 cut(s) 16, 89, 140
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 91
BstKTI GATC 4 cut(s) 78, 107, 126, 402
BstMBI GATC 4 cut(s) 75, 104, 123, 399
BstMCI CGRYCG 2 cut(s) 78, 154
BstMWI GCNNNNNNNGC 9 cut(s) 68, 77, 93, 154, 297, 306, 309, 312, 353
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 60
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 7 cut(s) 30, 46, 74, 300, 315, 321, 331
BstX2I RGATCY 1 cut(s) 399
BstYI RGATCY 1 cut(s) 399
BtsCI GGATG 1 cut(s) 415
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 3 cut(s) 16, 89, 140
Cfr10I RCCGGY 1 cut(s) 153
Csp6I GTAC 1 cut(s) 130
CviAII CATG 3 cut(s) 264, 334, 415
CviQI GTAC 1 cut(s) 130
DpnI GATC 4 cut(s) 77, 106, 125, 401
DpnII GATC 4 cut(s) 75, 104, 123, 399
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 118, 369
EcoICRI GAGCTC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 382
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 3 cut(s) 267, 337, 418
FaiI YATR 4 cut(s) 9, 265, 335, 416
FaqI GGGAC 1 cut(s) 201
FatI CATG 3 cut(s) 263, 333, 414
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 1 cut(s) 150
FspBI CTAG 1 cut(s) 240
HapII CCGG 2 cut(s) 154, 247
Hin1II CATG 3 cut(s) 267, 337, 418
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 379
HpaII CCGG 2 cut(s) 154, 247
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 4, 62
HpyF10VI GCNNNNNNNGC 9 cut(s) 68, 77, 93, 154, 297, 306, 309, 312, 353
Hsp92II CATG 3 cut(s) 267, 337, 418
Kzo9I GATC 4 cut(s) 75, 104, 123, 399
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 9 cut(s) 28, 100, 167, 170, 195, 260, 361, 369, 396
Lsp1109I GCAGC 7 cut(s) 30, 46, 74, 300, 315, 321, 331
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 293
MalI GATC 4 cut(s) 77, 106, 125, 401
MboI GATC 4 cut(s) 75, 104, 123, 399
MboII GAAGA 1 cut(s) 289
MflI RGATCY 1 cut(s) 399
MhlI GDGCHC 2 cut(s) 150, 226
MluCI AATT 1 cut(s) 391
MmeI TCCRAC 1 cut(s) 82
MspA1I CMGCKG 3 cut(s) 300, 306, 312
MspI CCGG 2 cut(s) 154, 247
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 9 cut(s) 68, 77, 93, 154, 297, 306, 309, 312, 353
NdeII GATC 4 cut(s) 75, 104, 123, 399
NlaIII CATG 3 cut(s) 267, 337, 418
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 293
NspI RCATGY 1 cut(s) 337
PciI ACATGT 1 cut(s) 333
PfeI GAWTC 1 cut(s) 379
Ple19I CGATCG 1 cut(s) 78
PscI ACATGT 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PstI CTGCAG 1 cut(s) 64
PsuI RGATCY 1 cut(s) 399
PvuI CGATCG 1 cut(s) 78
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SacI GAGCTC 1 cut(s) 150
Sau3AI GATC 4 cut(s) 75, 104, 123, 399
ScaI AGTACT 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 2 cut(s) 150, 226
SetI ASST 5 cut(s) 73, 144, 150, 167, 173
SfcI CTRYAG 1 cut(s) 60
SmlI CTYRAG 4 cut(s) 143, 166, 404, 424
SmoI CTYRAG 4 cut(s) 143, 166, 404, 424
Sse9I AATT 1 cut(s) 391
SsiI CCGC 6 cut(s) 213, 219, 300, 306, 312, 356
SspMI CTAG 1 cut(s) 240
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 126, 150
TasI AATT 1 cut(s) 391
TatI WGTACW 1 cut(s) 129
TauI GCSGC 3 cut(s) 303, 309, 315
TfiI GAWTC 1 cut(s) 379
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 7 cut(s) 18, 59, 62, 288, 303, 309, 344
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 2 cut(s) 191, 431
TspRI CASTG 1 cut(s) 298
XceI RCATGY 1 cut(s) 337
XspI CTAG 1 cut(s) 240
ZrmI AGTACT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.