AT4G22670

FAM10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013195
Physical Location & Seq
Forward (+)
11917987 .. 11920971
2985 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G22670.1

Sequence Viewer

Length: 1326 bp
ATGGATTCAACGAAGCTTAGTGAGCTAAAGGTCTTCATCGATCAATGCAAGTCTGACCCTTCCCTTCTCACTACTCCTTCACTCTCCTTCTTCCGTGACTATCTCGAGAGTCTTGGTGCTAAGATACCTACTGGTGTCCATGAAGAAGACAAAGACACTAAGCCGAGGAGTTTCGTAGTGGAAGAGAGTGATGATGATATGGATGAAACTGAAGAAGTAAAACCGAAAGTGGAGGAAGAAGAAGAAGAGGATGAGATTGTTGAATCTGATGTAGAGCTTGAAGGAGACACTGTTGAGCCTGATAATGATCCTCCTCAGAAGATGGGGGATTCATCAGTGGAGGTGACTGATGAGAATCGTGAAGCTGCTCAAGAAGCTAAGGGCAAAGCCATGGAGGCCCTTTCTGAAGGAAACTTTGATGAAGCAATTGAGCATTTAACTCGGGCAATAACGTTGAACCCGACTTCAGCTATTATGTATGGAAACAGAGCTAGTGTCTACATTAAGTTGAAGAAGCCAAACGCTGCTATTCGAGATGCAAACGCAGCATTGGAGATTAACCCTGATTCTGCCAAGGGATACAAGTCACGAGGTATGGCTCGTGCCATGCTTGGAGAATGGGCAGAGGCTGCAAAAGACCTTCACCTTGCATCTACGATAGACTATGATGAGGAAATTAGTGCTGTTCTCAAAAAGGTTGAACCTAATGCACATAAGCTTGAGGAGCACCGTAGAAAGTATGACAGATTACGTAAGGAAAGAGAGGACAAAAAGGCTGAACGGGATAGATTACGTCGCCGTGCTGAAGCACAGGCTGCCTATGATAAAGCTAAGAAAGAAGAACAGTCATCATCTAGCAGACCATCAGGAGGCGGTTTCCCAGGAGGTATGCCCGGTGGTTTCCCAGGAGGTATGCCCGGTGGATTCCCAGGAGGAATGGGAGGCATGCCCGGCGGATTCCCGGGAGGAATGGGTGGTATGGGCGGTATGCCCGGTGGATTCCCAGGAGGAATGGGCGGTGGTATGCCTGCAGGAATGGGCGGTGGTATGCCCGGAATGGGCGGTGGTATGCCTGCTGGAATGGGTGGTGGCGGTATGCCAGGTGCAGGCGGTGGTATGCCTGGTGGTGGCGGTATGCCTGGTGGTATGGACTTCAGCAAAATATTGAATGATCCTGAGCTAATGACGGCATTTAGCGACCCTGAAGTCATGGCTGCTCTTCAAGATGTGATGAAGAACCCTGCGAATCTAGCGAAGCATCAGGCGAATCCGAAGGTGGCTCCCGTGATTGCAAAGATGATGGGCAAATTTGCAGGACCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_8

Protein Analysis

441

Amino Acids

46.62

Weight (kDa)

4.83

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HipN PF18253 2 - 43 1.6e-18 Hsp70-interacting protein N N-terminal domain
TPR_16 PF13432 129 - 191 2.8e-06 Tetratricopeptide repeat
TPR_19 PF14559 133 - 191 1.8e-06 Tetratricopeptide repeat
TPR_1 PF00515 159 - 189 1e-05 Tetratricopeptide repeat
STI1-HOP_DP PF17830 385 - 435 1.1e-12 STI1/HOP, DP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22670
fragaria_vesca FvH4_5g00470 FvH4_5g00470
malus_domestica MD04G1080700.v1.1
prunus_persica Prupe.5G077400_v2.0.a1
pyrus_communis pycom04g07300
rosa_chinensis RchiOBHm_Chr7g0202041
rosa_laevigata RLG00000003631
rosa_multiflora Rmu_sc0006592.1_g000004
rosa_roxburghii Rroxscaffold_3G00254910
rosa_rugosa Rorug07G0067500 Rorug07G0067600 Rorug07G0067700
rosa_samantha Rh7AG194800 Rh7BG196300 Rh7CG206100 Rh7DG201500
rosa_wichuraiana Rw7G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1205
AccI GTMKAC 1 cut(s) 498
AciI CCGC 9 cut(s) 873, 954, 984, 1017, 1041, 1062, 1092, 1110, 1131
AclI AACGTT 1 cut(s) 452
AclWI GGATC 2 cut(s) 302, 1166
AcsI RAATTY 1 cut(s) 1307
AcuI CTGAAG 6 cut(s) 231, 426, 450, 825, 1138, 1224
AfiI CCNNNNNNNGG 4 cut(s) 869, 1058, 1106, 1127
AgsI TTSAA 8 cut(s) 9, 263, 281, 457, 511, 701, 1168, 1223
AjnI CCWGG 7 cut(s) 880, 904, 928, 1003, 1099, 1120, 1138
Alw21I GWGCWC 1 cut(s) 729
Alw26I GTCTC 1 cut(s) 279
AlwI GGATC 2 cut(s) 302, 1166
AlwNI CAGNNNCTG 1 cut(s) 629
Ama87I CYCGRG 3 cut(s) 104, 441, 961
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 6 cut(s) 365, 524, 545, 629, 815, 1214
ApoI RAATTY 1 cut(s) 1307
AspS9I GGNCC 2 cut(s) 397, 1316
AsuC2I CCSGG 7 cut(s) 894, 918, 951, 962, 963, 993, 1053
AsuHPI GGTGA 2 cut(s) 355, 635
AvaI CYCGRG 3 cut(s) 104, 441, 961
AvaII GGWCC 1 cut(s) 1316
BauI CACGAG 2 cut(s) 588, 600
BbsI GAAGAC 2 cut(s) 25, 153
Bbv12I GWGCWC 1 cut(s) 729
BbvI GCAGC 6 cut(s) 352, 511, 557, 616, 802, 1201
BccI CCATC 3 cut(s) 316, 871, 1294
BceAI ACGGC 2 cut(s) 783, 1203
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BciT130I CCWGG 7 cut(s) 882, 906, 930, 1005, 1101, 1122, 1140
BciVI GTATCC 1 cut(s) 572
BcnI CCSGG 7 cut(s) 894, 918, 951, 962, 963, 993, 1053
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 3 cut(s) 492, 855, 1250
BfmI CTRYAG 1 cut(s) 1029
BfuI GTATCC 1 cut(s) 572
BglI GCCNNNNNGGC 1 cut(s) 395
BisI GCNGC 6 cut(s) 366, 525, 546, 630, 816, 1215
BlsI GCNGC 6 cut(s) 367, 526, 547, 631, 817, 1216
Bme18I GGWCC 1 cut(s) 1316
BmeT110I CYCGRG 3 cut(s) 104, 441, 961
BmgT120I GGNCC 2 cut(s) 397, 1316
BmiI GGNNCC 1 cut(s) 1281
BmsI GCATC 3 cut(s) 526, 659, 1267
BpiI GAAGAC 2 cut(s) 25, 153
Bpu10I CCTNAGC 2 cut(s) 378, 1176
BpuEI CTTGAG 2 cut(s) 354, 740
BpuMI CCSGG 7 cut(s) 894, 918, 951, 962, 963, 993, 1053
Bsa29I ATCGAT 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 752
BsaBI GATNNNNATC 2 cut(s) 306, 354
BsaJI CCNNGG 8 cut(s) 164, 390, 573, 880, 904, 928, 961, 1003
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 4 cut(s) 869, 1058, 1106, 1127
Bse1I ACTGG 1 cut(s) 136
Bse8I GATNNNNATC 2 cut(s) 306, 354
BseBI CCWGG 7 cut(s) 882, 906, 930, 1005, 1101, 1122, 1140
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 8 cut(s) 164, 390, 573, 880, 904, 928, 961, 1003
BseGI GGATG 2 cut(s) 208, 256
BseJI GATNNNNATC 2 cut(s) 306, 354
BseLI CCNNNNNNNGG 4 cut(s) 869, 1058, 1106, 1127
BseMII CTCAG 2 cut(s) 329, 1167
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 3 cut(s) 181, 303, 737
BseXI GCAGC 6 cut(s) 352, 511, 557, 616, 802, 1201
BsgI GTGCAG 1 cut(s) 1125
BshFI GGCC 1 cut(s) 398
BshVI ATCGAT 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 729
BsiHKCI CYCGRG 3 cut(s) 104, 441, 961
BsiSI CCGG 6 cut(s) 894, 918, 951, 962, 993, 1053
BslI CCNNNNNNNGG 4 cut(s) 869, 1058, 1106, 1127
BsmAI GTCTC 1 cut(s) 279
BsnI GGCC 1 cut(s) 398
BsoBI CYCGRG 3 cut(s) 104, 441, 961
Bsp1286I GDGCHC 1 cut(s) 729
Bsp143I GATC 3 cut(s) 40, 307, 1171
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 9 cut(s) 873, 954, 984, 1017, 1041, 1062, 1092, 1110, 1131
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 2 cut(s) 328, 1168
BspDI ATCGAT 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 1281
BspMAI CTGCAG 1 cut(s) 1033
BspPI GGATC 2 cut(s) 302, 1166
BspQI GCTCTTC 1 cut(s) 1224
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 8 cut(s) 164, 390, 573, 880, 904, 928, 961, 1003
BssMI GATC 3 cut(s) 40, 307, 1171
BssSI CACGAG 2 cut(s) 588, 600
BssT1I CCWWGG 2 cut(s) 390, 573
Bst2BI CACGAG 2 cut(s) 588, 600
Bst2UI CCWGG 7 cut(s) 882, 906, 930, 1005, 1101, 1122, 1140
Bst4CI ACNGT 3 cut(s) 292, 731, 846
Bst6I CTCTTC 3 cut(s) 177, 240, 1224
BstAPI GCANNNNNTGC 2 cut(s) 629, 815
BstBAI YACGTR 1 cut(s) 752
BstC8I GCNNGC 4 cut(s) 947, 1029, 1074, 1108
BstDEI CTNAG 8 cut(s) 17, 120, 159, 315, 378, 831, 1176, 1320
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 208, 256
BstKTI GATC 3 cut(s) 43, 310, 1174
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 3 cut(s) 40, 307, 1171
BstMWI GCNNNNNNNGC 9 cut(s) 22, 374, 395, 545, 629, 724, 815, 951, 1250
BstNI CCWGG 7 cut(s) 882, 906, 930, 1005, 1101, 1122, 1140
BstNSI RCATGY 1 cut(s) 949
BstSFI CTRYAG 1 cut(s) 1029
BstSNI TACGTA 1 cut(s) 752
BstV1I GCAGC 6 cut(s) 352, 511, 557, 616, 802, 1201
BstV2I GAAGAC 2 cut(s) 25, 153
Bsu15I ATCGAT 1 cut(s) 39
BsuI GTATCC 1 cut(s) 572
BsuRI GGCC 1 cut(s) 398
BsuTUI ATCGAT 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 2 cut(s) 208, 256
BtsIMutI CAGTG 2 cut(s) 288, 342
Cac8I GCNNGC 4 cut(s) 947, 1029, 1074, 1108
CaiI CAGNNNCTG 1 cut(s) 629
Cfr13I GGNCC 2 cut(s) 397, 1316
Cfr9I CCCGGG 1 cut(s) 961
ClaI ATCGAT 1 cut(s) 39
CviAII CATG 5 cut(s) 140, 391, 607, 946, 1210
DdeI CTNAG 8 cut(s) 17, 120, 159, 315, 378, 831, 1176, 1320
DpnI GATC 3 cut(s) 42, 309, 1173
DpnII GATC 3 cut(s) 40, 307, 1171
DrdI GACNNNNNNGTC 1 cut(s) 1205
DseDI GACNNNNNNGTC 1 cut(s) 1205
Eam1104I CTCTTC 3 cut(s) 177, 240, 1224
EarI CTCTTC 3 cut(s) 177, 240, 1224
EciI GGCGGA 1 cut(s) 969
Eco105I TACGTA 1 cut(s) 752
Eco130I CCWWGG 2 cut(s) 390, 573
Eco47I GGWCC 1 cut(s) 1316
Eco57I CTGAAG 6 cut(s) 231, 426, 450, 825, 1138, 1224
Eco88I CYCGRG 3 cut(s) 104, 441, 961
EcoO109I RGGNCCY 2 cut(s) 397, 1316
EcoRII CCWGG 7 cut(s) 880, 904, 928, 1003, 1099, 1120, 1138
EcoT14I CCWWGG 2 cut(s) 390, 573
ErhI CCWWGG 2 cut(s) 390, 573
FaeI CATG 5 cut(s) 143, 394, 610, 949, 1213
FatI CATG 5 cut(s) 139, 390, 606, 945, 1209
FblI GTMKAC 1 cut(s) 498
Fnu4HI GCNGC 6 cut(s) 366, 525, 546, 630, 816, 1215
FokI GGATG 2 cut(s) 215, 263
Fsp4HI GCNGC 6 cut(s) 366, 525, 546, 630, 816, 1215
FspBI CTAG 3 cut(s) 492, 855, 1250
GluI GCNGC 6 cut(s) 366, 525, 546, 630, 816, 1215
HaeIII GGCC 1 cut(s) 398
HapII CCGG 6 cut(s) 894, 918, 951, 962, 993, 1053
Hin1II CATG 5 cut(s) 143, 394, 610, 949, 1213
HindIII AAGCTT 2 cut(s) 14, 716
HpaII CCGG 6 cut(s) 894, 918, 951, 962, 993, 1053
HphI GGTGA 2 cut(s) 355, 635
Hpy166II GTNNAC 1 cut(s) 499
Hpy188I TCNGA 5 cut(s) 55, 268, 318, 406, 1272
Hpy188III TCNNGA 9 cut(s) 104, 106, 359, 371, 533, 588, 867, 1175, 1223
Hpy8I GTNNAC 1 cut(s) 499
Hpy99I CGWCG 1 cut(s) 798
HpyAV CCTTC 8 cut(s) 69, 74, 87, 97, 275, 401, 650, 1267
HpyCH4III ACNGT 3 cut(s) 292, 731, 846
HpyCH4IV ACGT 3 cut(s) 452, 751, 793
HpyCH4V TGCA 9 cut(s) 48, 539, 632, 650, 710, 1031, 1106, 1292, 1313
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 374, 395, 545, 629, 724, 815, 951, 1250
HpyF3I CTNAG 8 cut(s) 17, 120, 159, 315, 378, 831, 1176, 1320
HpySE526I ACGT 3 cut(s) 452, 751, 793
Hsp92II CATG 5 cut(s) 143, 394, 610, 949, 1213
Kzo9I GATC 3 cut(s) 40, 307, 1171
LguI GCTCTTC 1 cut(s) 1224
LmnI GCTCC 2 cut(s) 724, 1285
Lsp1109I GCAGC 6 cut(s) 352, 511, 557, 616, 802, 1201
LweI GCATC 3 cut(s) 526, 659, 1267
MaeI CTAG 3 cut(s) 492, 855, 1250
MaeII ACGT 3 cut(s) 452, 751, 793
MaeIII GTNAC 3 cut(s) 95, 343, 585
MalI GATC 3 cut(s) 42, 309, 1173
MboI GATC 3 cut(s) 40, 307, 1171
MfeI CAATTG 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 729
MluCI AATT 3 cut(s) 426, 675, 1307
MlyI GAGTC 1 cut(s) 118
MseI TTAA 3 cut(s) 437, 504, 558
MspI CCGG 6 cut(s) 894, 918, 951, 962, 993, 1053
MunI CAATTG 1 cut(s) 426
MvaI CCWGG 7 cut(s) 882, 906, 930, 1005, 1101, 1122, 1140
MwoI GCNNNNNNNGC 9 cut(s) 22, 374, 395, 545, 629, 724, 815, 951, 1250
NciI CCSGG 7 cut(s) 894, 918, 951, 962, 963, 993, 1053
NcoI CCATGG 1 cut(s) 390
NdeII GATC 3 cut(s) 40, 307, 1171
NlaIII CATG 5 cut(s) 143, 394, 610, 949, 1213
NlaIV GGNNCC 1 cut(s) 1281
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 3 cut(s) 95, 343, 585
NspI RCATGY 1 cut(s) 949
PaeI GCATGC 1 cut(s) 949
PaeR7I CTCGAG 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 1224
PcsI WCGNNNNNNNCGW 1 cut(s) 458
PkrI GCNGC 6 cut(s) 367, 526, 547, 631, 817, 1216
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
Ppu21I YACGTR 1 cut(s) 752
PpuMI RGGWCCY 1 cut(s) 1316
Psp1406I AACGTT 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 1316
Psp6I CCWGG 7 cut(s) 880, 904, 928, 1003, 1099, 1120, 1138
PspGI CCWGG 7 cut(s) 880, 904, 928, 1003, 1099, 1120, 1138
PspN4I GGNNCC 1 cut(s) 1281
PspPI GGNCC 2 cut(s) 397, 1316
PspPPI RGGWCCY 1 cut(s) 1316
PstI CTGCAG 1 cut(s) 1033
PstNI CAGNNNCTG 1 cut(s) 629
SapI GCTCTTC 1 cut(s) 1224
SaqAI TTAA 3 cut(s) 437, 504, 558
SatI GCNGC 6 cut(s) 366, 525, 546, 630, 816, 1215
Sau3AI GATC 3 cut(s) 40, 307, 1171
Sau96I GGNCC 2 cut(s) 397, 1316
SbfI CCTGCAGG 1 cut(s) 1033
SchI GAGTC 1 cut(s) 118
SdaI CCTGCAGG 1 cut(s) 1033
SduI GDGCHC 1 cut(s) 729
SfaNI GCATC 3 cut(s) 526, 659, 1267
SfcI CTRYAG 1 cut(s) 1029
Sfr274I CTCGAG 1 cut(s) 104
SinI GGWCC 1 cut(s) 1316
SlaI CTCGAG 1 cut(s) 104
SmaI CCCGGG 1 cut(s) 963
SmlI CTYRAG 3 cut(s) 104, 369, 719
SmoI CTYRAG 3 cut(s) 104, 369, 719
SnaBI TACGTA 1 cut(s) 752
SphI GCATGC 1 cut(s) 949
Sse8387I CCTGCAGG 1 cut(s) 1033
Sse9I AATT 3 cut(s) 426, 675, 1307
SsiI CCGC 9 cut(s) 873, 954, 984, 1017, 1041, 1062, 1092, 1110, 1131
SspI AATATT 1 cut(s) 1164
SspMI CTAG 3 cut(s) 492, 855, 1250
StyI CCWWGG 2 cut(s) 390, 573
TaaI ACNGT 3 cut(s) 292, 731, 846
TaiI ACGT 3 cut(s) 455, 754, 796
TaqI TCGA 3 cut(s) 39, 105, 532
TasI AATT 3 cut(s) 426, 675, 1307
Tru1I TTAA 3 cut(s) 437, 504, 558
Tru9I TTAA 3 cut(s) 437, 504, 558
TscAI CASTG 2 cut(s) 295, 342
TseFI GTSAC 3 cut(s) 95, 343, 585
TseI GCWGC 6 cut(s) 365, 524, 545, 629, 815, 1214
Tsp45I GTSAC 3 cut(s) 95, 343, 585
TspDTI ATGAA 6 cut(s) 25, 156, 219, 321, 435, 1247
TspGWI ACGGA 1 cut(s) 83
TspMI CCCGGG 1 cut(s) 961
TspRI CASTG 2 cut(s) 295, 342
VpaK11BI GGWCC 1 cut(s) 1316
XapI RAATTY 1 cut(s) 1307
XceI RCATGY 1 cut(s) 949
XhoI CTCGAG 1 cut(s) 104
XmaI CCCGGG 1 cut(s) 961
XmiI GTMKAC 1 cut(s) 498
XspI CTAG 3 cut(s) 492, 855, 1250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.