RchiOBHm_Chr7g0202041

Heat shock chaperonin-binding motif.

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
19707836 .. 19712946
5111 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18086

Sequence Viewer

Length: 1218 bp
ATGGAGGAAGCGAAGCTGAAGCAATTGAAGCATTTCGTCGAGCAGTGCAAGTCCGATCCCTCCATTCTCGCCGATCCTTCGCTCTCCTTCTTCCGCGATTACCTTGAGAGTCTCGGTGCTACTGTGCCTTCATCTGCTGGCAAGAATGAGGATTCGAAACCGAGGAGCTATGTAGTGGAGGAGAGCGACGACGACATGTCGGAGGAGGCTGAGCCGGAGCAGGTTCATGTTCAGGAAGAAGAGGAAGAAGAGATAGTCGAATCTGATCTCGAGCTTGAAGGTGACATTGTGGAGCCTGACAATGAACCTCCTCAGAAGATGGGAGACGCATCTGTTGAGGTCACTGAAGAGAACCGTGATGCCTCGCAGGCGGCCAAGGGCAAAGCTATTGAGGCCATTTCAGAAGGTAACTTGGAGGAAGCCATTGAGCATCTCACTGAGGCAATTTTGCTCAATCCTACTTCGGCAATTATGTACGGCACCAGAGCCAGTGTGTACATCAAAATGAAAAAACCTAATGCTGCCATTCGTGATGCCAACGCTGCTTTGGAGATTAATCCCGACTCTGCTAAAGGCTACAAGTCTCGTGGCATAGCTCATTCAATGCTTGGTAATTGGGAAGAGGCTGCAAAGGACCTCCACTTGGCATCAAAGCTAGATTTTGATGAGGAAATAAGTGCCGTACTTAAGAAGGTTGAACCTAATGTACACAAGATCCAGGAACACCGTCGTAAGTATGATAGGCTTCGTAAGGAAAGAGAGGACAGAAAGATTGAGCGTGAGAGACAACGTCGCAAAGCTGAGGCGCAGGCTGCGTATGAGAAGGCTAAGAAGCAAGAGCAGTCGTCTTCTAGCAGAAGACCTGGAGGCTTTCCTGGTGGAATGCCTGGAGGTTTTCCAGGGGCAGGAGGGATGCCAGGTGGCTTTCCTGGGGCAGGAGGGATGCCAGGTGGTTTTCCAGGTGCAGGAGGAATGCCAGGTGGCTTTCCAGGCGCAGGAGGTGCGCCTGGAGGCTCTGCAGGAGGGGTTCCTGGAAATGTTGACTTCAGCAAAATATTAAATGACCCAGAACTGATGGCTGCATTTAGTGATCCTGAAGTTATGGCTGCTCTTCAAGATGTGATGAAGAACCCTGCTAATCTAGCAAAGCATCAAGCAAATCCTAAGGTGGCGCCTATAATTGCCAAGATGATGAGCAAATTTGGTGGACCGAAGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

405

Amino Acids

43.58

Weight (kDa)

5.04

Isoelectric Point (pI)

62.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HipN PF18253 3 - 43 1.9e-19 Hsp70-interacting protein N N-terminal domain
STI1-HOP_DP PF17830 349 - 399 1.1e-12 STI1/HOP, DP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013195)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 211
AccB1I GGYRCC 2 cut(s) 479, 1171
AccII CGCG 1 cut(s) 96
AciI CCGC 2 cut(s) 94, 371
AclWI GGATC 4 cut(s) 50, 68, 709, 1085
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 1 cut(s) 1199
AcuI CTGAAG 4 cut(s) 38, 366, 1030, 1116
AcyI GRCGYC 1 cut(s) 1172
AfaI GTAC 4 cut(s) 476, 497, 684, 708
AfiI CCNNNNNNNGG 5 cut(s) 643, 905, 935, 965, 995
AflII CTTAAG 1 cut(s) 686
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 5 cut(s) 28, 278, 603, 698, 1115
AhdI GACNNNNNGTC 1 cut(s) 196
AluBI AGCT 7 cut(s) 16, 168, 274, 386, 596, 655, 800
AluI AGCT 7 cut(s) 16, 168, 274, 386, 596, 655, 800
Alw26I GTCTC 4 cut(s) 116, 318, 588, 778
AlwI GGATC 4 cut(s) 50, 68, 709, 1085
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 2 cut(s) 372, 393
ApeKI GCWGC 6 cut(s) 521, 542, 626, 812, 1079, 1106
ApoI RAATTY 1 cut(s) 1199
AseI ATTAAT 1 cut(s) 555
Asp700I GAANNNNTTC 1 cut(s) 32
AspLEI GCGC 4 cut(s) 808, 995, 1006, 1174
AspS9I GGNCC 2 cut(s) 634, 1208
AsuHPI GGTGA 1 cut(s) 293
AsuII TTCGAA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 2 cut(s) 634, 1208
AxyI CCTNAGG 1 cut(s) 1164
BanI GGYRCC 2 cut(s) 479, 1171
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 2 cut(s) 840, 865
BbvCI CCTCAGC 1 cut(s) 801
BbvI GCAGC 6 cut(s) 508, 529, 613, 799, 1066, 1093
BccI CCATC 2 cut(s) 313, 1069
BceAI ACGGC 2 cut(s) 493, 665
BcoDI GTCTC 4 cut(s) 116, 318, 588, 778
BfaI CTAG 3 cut(s) 656, 852, 1142
BfmI CTRYAG 1 cut(s) 1017
BfoI RGCGCY 1 cut(s) 1175
BfrI CTTAAG 1 cut(s) 686
BfuAI ACCTGC 1 cut(s) 211
BglI GCCNNNNNGGC 1 cut(s) 368
BisI GCNGC 7 cut(s) 372, 522, 543, 627, 813, 1080, 1107
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 7 cut(s) 373, 523, 544, 628, 814, 1081, 1108
Bme18I GGWCC 2 cut(s) 634, 1208
BmeRI GACNNNNNGTC 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 634, 1208
BmiI GGNNCC 4 cut(s) 294, 481, 1029, 1173
BmsI GCATC 8 cut(s) 338, 349, 439, 523, 656, 903, 933, 1159
BpiI GAAGAC 2 cut(s) 840, 865
BpmI CTGGAG 3 cut(s) 885, 909, 1029
Bpu10I CCTNAGC 1 cut(s) 801
Bpu1102I GCTNAGC 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 1172
BsaJI CCNNGG 4 cut(s) 161, 375, 899, 929
Bsc4I CCNNNNNNNGG 5 cut(s) 643, 905, 935, 965, 995
Bse1I ACTGG 1 cut(s) 489
Bse21I CCTNAGG 1 cut(s) 1164
BseDI CCNNGG 4 cut(s) 161, 375, 899, 929
BseGI GGATG 2 cut(s) 918, 948
BseLI CCNNNNNNNGG 5 cut(s) 643, 905, 935, 965, 995
BseMII CTCAG 4 cut(s) 201, 326, 429, 792
BseNI ACTGG 1 cut(s) 489
BseRI GAGGAG 4 cut(s) 178, 194, 218, 300
BseXI GCAGC 6 cut(s) 508, 529, 613, 799, 1066, 1093
BsgI GTGCAG 1 cut(s) 984
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 2 cut(s) 374, 395
BshNI GGYRCC 2 cut(s) 479, 1171
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 5 cut(s) 643, 905, 935, 965, 995
BsmAI GTCTC 4 cut(s) 116, 318, 588, 778
BsmBI CGTCTC 1 cut(s) 318
BsmI GAATGC 2 cut(s) 888, 978
BsnI GGCC 2 cut(s) 374, 395
BsoBI CYCGRG 1 cut(s) 269
Bsp119I TTCGAA 1 cut(s) 155
Bsp1407I TGTACA 2 cut(s) 495, 706
Bsp143I GATC 5 cut(s) 55, 73, 265, 714, 1090
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 2 cut(s) 94, 371
BspANI GGCC 2 cut(s) 374, 395
BspCNI CTCAG 4 cut(s) 202, 325, 430, 793
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 4 cut(s) 294, 481, 1029, 1173
BspMAI CTGCAG 1 cut(s) 1021
BspMI ACCTGC 1 cut(s) 211
BspPI GGATC 4 cut(s) 50, 68, 709, 1085
BspQI GCTCTTC 1 cut(s) 1116
BspT104I TTCGAA 1 cut(s) 155
BspT107I GGYRCC 2 cut(s) 479, 1171
BspTI CTTAAG 1 cut(s) 686
BsrGI TGTACA 2 cut(s) 495, 706
BsrI ACTGG 1 cut(s) 489
BssECI CCNNGG 4 cut(s) 161, 375, 899, 929
BssMI GATC 5 cut(s) 55, 73, 265, 714, 1090
BssNI GRCGYC 1 cut(s) 1172
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 1 cut(s) 375
Bst2BI CACGAG 1 cut(s) 585
Bst4CI ACNGT 3 cut(s) 124, 356, 728
Bst6I CTCTTC 5 cut(s) 234, 243, 342, 615, 1116
BstACI GRCGYC 1 cut(s) 1172
BstAFI CTTAAG 1 cut(s) 686
BstAPI GCANNNNNTGC 1 cut(s) 1001
BstAUI TGTACA 2 cut(s) 495, 706
BstBI TTCGAA 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 139, 369, 810
BstDEI CTNAG 6 cut(s) 210, 312, 438, 801, 828, 1164
BstENI CCTNNNNNAGG 1 cut(s) 933
BstF5I GGATG 2 cut(s) 918, 948
BstFNI CGCG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 1175
BstHHI GCGC 4 cut(s) 808, 995, 1006, 1174
BstKTI GATC 5 cut(s) 58, 76, 268, 717, 1093
BstMAI GTCTC 4 cut(s) 116, 318, 588, 778
BstMBI GATC 5 cut(s) 55, 73, 265, 714, 1090
BstMWI GCNNNNNNNGC 8 cut(s) 28, 368, 392, 542, 812, 990, 1001, 1142
BstNSI RCATGY 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 1017
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 6 cut(s) 508, 529, 613, 799, 1066, 1093
BstV2I GAAGAC 2 cut(s) 840, 865
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
Bsu36I CCTNAGG 1 cut(s) 1164
BsuRI GGCC 2 cut(s) 374, 395
BtsCI GGATG 2 cut(s) 918, 948
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 4 cut(s) 50, 342, 435, 496
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 3 cut(s) 139, 369, 810
CfoI GCGC 4 cut(s) 808, 995, 1006, 1174
Cfr13I GGNCC 2 cut(s) 634, 1208
CseI GACGC 1 cut(s) 335
Csp6I GTAC 4 cut(s) 475, 496, 683, 707
CspCI CAANNNNNGTGG 3 cut(s) 568, 603, 1186
CviAII CATG 2 cut(s) 196, 227
CviQI GTAC 4 cut(s) 475, 496, 683, 707
DdeI CTNAG 6 cut(s) 210, 312, 438, 801, 828, 1164
DinI GGCGCC 1 cut(s) 1173
DpnI GATC 5 cut(s) 57, 75, 267, 716, 1092
DpnII GATC 5 cut(s) 55, 73, 265, 714, 1090
DriI GACNNNNNGTC 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 5 cut(s) 234, 243, 342, 615, 1116
Eam1105I GACNNNNNGTC 1 cut(s) 196
EarI CTCTTC 5 cut(s) 234, 243, 342, 615, 1116
Eco130I CCWWGG 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 634, 1208
Eco57I CTGAAG 4 cut(s) 38, 366, 1030, 1116
Eco81I CCTNAGG 1 cut(s) 1164
Eco88I CYCGRG 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 933
EcoO109I RGGNCCY 1 cut(s) 634
EcoT14I CCWWGG 1 cut(s) 375
EgeI GGCGCC 1 cut(s) 1173
EheI GGCGCC 1 cut(s) 1173
ErhI CCWWGG 1 cut(s) 375
Esp3I CGTCTC 1 cut(s) 318
FaeI CATG 2 cut(s) 199, 230
FaiI YATR 9 cut(s) 171, 197, 228, 473, 593, 738, 819, 1103, 1178
FatI CATG 2 cut(s) 195, 226
Fnu4HI GCNGC 7 cut(s) 372, 522, 543, 627, 813, 1080, 1107
FokI GGATG 2 cut(s) 925, 955
Fsp4HI GCNGC 7 cut(s) 372, 522, 543, 627, 813, 1080, 1107
FspBI CTAG 3 cut(s) 656, 852, 1142
GlaI GCGC 4 cut(s) 807, 994, 1005, 1173
GluI GCNGC 7 cut(s) 372, 522, 543, 627, 813, 1080, 1107
GsuI CTGGAG 3 cut(s) 885, 909, 1029
HaeII RGCGCY 1 cut(s) 1175
HaeIII GGCC 2 cut(s) 374, 395
HapII CCGG 1 cut(s) 215
HgaI GACGC 1 cut(s) 335
HhaI GCGC 4 cut(s) 808, 995, 1006, 1174
Hin1I GRCGYC 1 cut(s) 1172
Hin1II CATG 2 cut(s) 199, 230
Hin6I GCGC 4 cut(s) 806, 993, 1004, 1172
HinP1I GCGC 4 cut(s) 806, 993, 1004, 1172
HincII GTYRAC 1 cut(s) 1042
HindII GTYRAC 1 cut(s) 1042
HinfI GANTC 4 cut(s) 109, 152, 260, 563
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 4 cut(s) 496, 709, 1042, 1208
Hpy188I TCNGA 5 cut(s) 55, 202, 265, 315, 403
Hpy188III TCNNGA 6 cut(s) 233, 269, 530, 560, 1094, 1115
Hpy8I GTNNAC 4 cut(s) 496, 709, 1042, 1208
Hpy99I CGWCG 5 cut(s) 41, 191, 194, 732, 795
HpyAV CCTTC 7 cut(s) 87, 97, 138, 272, 398, 685, 817
HpyCH4III ACNGT 3 cut(s) 124, 356, 728
HpyCH4IV ACGT 1 cut(s) 790
HpyCH4V TGCA 5 cut(s) 48, 629, 965, 1019, 1082
HpyF10VI GCNNNNNNNGC 8 cut(s) 28, 368, 392, 542, 812, 990, 1001, 1142
HpyF3I CTNAG 6 cut(s) 210, 312, 438, 801, 828, 1164
HpySE526I ACGT 1 cut(s) 790
Hsp92I GRCGYC 1 cut(s) 1172
Hsp92II CATG 2 cut(s) 199, 230
HspAI GCGC 4 cut(s) 806, 993, 1004, 1172
KasI GGCGCC 1 cut(s) 1171
Kzo9I GATC 5 cut(s) 55, 73, 265, 714, 1090
LguI GCTCTTC 1 cut(s) 1116
LmnI GCTCC 3 cut(s) 165, 217, 292
Lsp1109I GCAGC 6 cut(s) 508, 529, 613, 799, 1066, 1093
LweI GCATC 8 cut(s) 338, 349, 439, 523, 656, 903, 933, 1159
MaeI CTAG 3 cut(s) 656, 852, 1142
MaeII ACGT 1 cut(s) 790
MaeIII GTNAC 3 cut(s) 281, 340, 407
MalI GATC 5 cut(s) 57, 75, 267, 716, 1092
MboI GATC 5 cut(s) 55, 73, 265, 714, 1090
MfeI CAATTG 1 cut(s) 23
MflI RGATCY 1 cut(s) 714
MluCI AATT 6 cut(s) 23, 444, 468, 613, 1179, 1199
Mly113I GGCGCC 1 cut(s) 1172
MlyI GAGTC 2 cut(s) 118, 557
MmeI TCCRAC 1 cut(s) 180
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 3 cut(s) 555, 687, 1058
MslI CAYNNNNRTG 1 cut(s) 503
MspCI CTTAAG 1 cut(s) 686
MspI CCGG 1 cut(s) 215
MunI CAATTG 1 cut(s) 23
Mva1269I GAATGC 2 cut(s) 888, 978
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 8 cut(s) 28, 368, 392, 542, 812, 990, 1001, 1142
NarI GGCGCC 1 cut(s) 1172
NdeII GATC 5 cut(s) 55, 73, 265, 714, 1090
NlaIII CATG 2 cut(s) 199, 230
NlaIV GGNNCC 4 cut(s) 294, 481, 1029, 1173
NmuCI GTSAC 2 cut(s) 281, 340
NspI RCATGY 1 cut(s) 199
NspV TTCGAA 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 269
PciI ACATGT 1 cut(s) 195
PciSI GCTCTTC 1 cut(s) 1116
PctI GAATGC 2 cut(s) 888, 978
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 2 cut(s) 152, 260
PflFI GACNNNGTC 1 cut(s) 789
PfoI TCCNGGA 2 cut(s) 717, 1030
PkrI GCNGC 7 cut(s) 373, 523, 544, 628, 814, 1081, 1108
PleI GAGTC 2 cut(s) 117, 557
PluTI GGCGCC 1 cut(s) 1175
PpsI GAGTC 2 cut(s) 117, 557
PpuMI RGGWCCY 1 cut(s) 634
PscI ACATGT 1 cut(s) 195
PshBI ATTAAT 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 634
PspN4I GGNNCC 4 cut(s) 294, 481, 1029, 1173
PspPI GGNCC 2 cut(s) 634, 1208
PspPPI RGGWCCY 1 cut(s) 634
PsrI GAACNNNNNNTAC 2 cut(s) 690, 722
PstI CTGCAG 1 cut(s) 1021
PsuI RGATCY 1 cut(s) 714
PsyI GACNNNGTC 1 cut(s) 789
RsaI GTAC 4 cut(s) 476, 497, 684, 708
RsaNI GTAC 4 cut(s) 475, 496, 683, 707
RseI CAYNNNNRTG 1 cut(s) 503
SapI GCTCTTC 1 cut(s) 1116
SaqAI TTAA 3 cut(s) 555, 687, 1058
SatI GCNGC 7 cut(s) 372, 522, 543, 627, 813, 1080, 1107
Sau3AI GATC 5 cut(s) 55, 73, 265, 714, 1090
Sau96I GGNCC 2 cut(s) 634, 1208
SchI GAGTC 2 cut(s) 118, 557
SfaNI GCATC 8 cut(s) 338, 349, 439, 523, 656, 903, 933, 1159
SfcI CTRYAG 1 cut(s) 1017
SfoI GGCGCC 1 cut(s) 1173
Sfr274I CTCGAG 1 cut(s) 269
SfuI TTCGAA 1 cut(s) 155
SinI GGWCC 2 cut(s) 634, 1208
SlaI CTCGAG 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 3 cut(s) 104, 269, 686
SmoI CTYRAG 3 cut(s) 104, 269, 686
Sse9I AATT 6 cut(s) 23, 444, 468, 613, 1179, 1199
SsiI CCGC 2 cut(s) 94, 371
SspDI GGCGCC 1 cut(s) 1171
SspI AATATT 1 cut(s) 1056
SspMI CTAG 3 cut(s) 656, 852, 1142
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 3 cut(s) 124, 356, 728
TaiI ACGT 1 cut(s) 793
TaqI TCGA 4 cut(s) 39, 155, 258, 270
TasI AATT 6 cut(s) 23, 444, 468, 613, 1179, 1199
TatI WGTACW 2 cut(s) 495, 706
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 2 cut(s) 152, 260
Tru1I TTAA 3 cut(s) 555, 687, 1058
Tru9I TTAA 3 cut(s) 555, 687, 1058
TscAI CASTG 4 cut(s) 50, 349, 442, 496
TseFI GTSAC 2 cut(s) 281, 340
TseI GCWGC 6 cut(s) 521, 542, 626, 812, 1079, 1106
Tsp45I GTSAC 2 cut(s) 281, 340
TspDTI ATGAA 5 cut(s) 120, 215, 318, 521, 1139
TspRI CASTG 4 cut(s) 50, 349, 442, 496
Tth111I GACNNNGTC 1 cut(s) 789
Vha464I CTTAAG 1 cut(s) 686
VpaK11BI GGWCC 2 cut(s) 634, 1208
VspI ATTAAT 1 cut(s) 555
XagI CCTNNNNNAGG 1 cut(s) 933
XapI RAATTY 1 cut(s) 1199
XceI RCATGY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 3 cut(s) 656, 852, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.