Rh7DG201500

Heat shock chaperonin-binding motif.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013195
Physical Location & Seq
Reverse (-)
19059292 .. 19065260
5969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG201500.1

Sequence Viewer

Length: 864 bp
ATGGAGGAAGCGAAGCTGAAGCAATTGAAGCATTTCGTCGAGCAGTGCAAGTCCGATCCCTCCATTCTCGCCGATCCTTCGCTCTCCTTCTTCCGCGATTACCTTGAGAGTCTCGGTGCTACTGTGCCTTCATCTGCTGGCAAGAATGAGGATTCGAAACCGAGGAGCTATGTAGTGGAGGAGAGCGACGACGACATGTCGGAGGAGGCTGAGCCGGAGCAGGTTCATGTTCAGGAAGAAGAGGAAGAAGAGATAGTCGAATCTGATCTCGAGCTTGAAGGTGACATTGTGGAGCCTGACAATGAACCTCCTCAGAAGATGGGAGACGCATCTGTTGAGGTCACTGAAGAGAACCGTGATGCCTCGCAGGCGGCCAAGGGCAAAGCTATTGAGGCCATTTCAGAAGGTAACTTGGAGGAAGCCATTGAGCATCTCACTGAGGCAATTTTGCTCAATCCTACTTCGGCAATTATGTACGGCACCAGAGCCAGTGTGTACATCAAAATGAAAAAACCTAATGCTGCCATTCGTGATGCCAACGCTGCTTTGGAGATTAATCCCGACTCTGCTAAAGGCTACAAGTCTCGTGGCATAGCTCATTCAATGCTTGGTAATTGGGAAGAGGCTGCAAAGGACCTCCACTTGGCATCAAAGCTAGATTTTGATGAGGAAATAAGTGCCGTACTTAAGAAGGTTGAACCTAATGTACACAAGATCCAGGAACACCGTCGTAAGTATGATAGGCTTCGTAAGGAAAGAGAGGACAGAAAGATTGAGCGTGAGAGACAACGTCGCAAAGCTGAGGCGCAGGTTAGTTATATATATAAAGTAGAAGAAACTTTTGTGCATCAAGTTTCCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_8

Protein Analysis

287

Amino Acids

32.49

Weight (kDa)

4.81

Isoelectric Point (pI)

54.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HipN PF18253 3 - 43 1.2e-19 Hsp70-interacting protein N N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22670
fragaria_vesca FvH4_5g00470 FvH4_5g00470
malus_domestica MD04G1080700.v1.1
prunus_persica Prupe.5G077400_v2.0.a1
pyrus_communis pycom04g07300
rosa_chinensis RchiOBHm_Chr7g0202041
rosa_laevigata RLG00000003631
rosa_multiflora Rmu_sc0006592.1_g000004
rosa_roxburghii Rroxscaffold_3G00254910
rosa_rugosa Rorug07G0067500 Rorug07G0067600 Rorug07G0067700
rosa_samantha Rh7AG194800 Rh7BG196300 Rh7CG206100 Rh7DG201500
rosa_wichuraiana Rw7G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 211, 799
AccB1I GGYRCC 1 cut(s) 479
AccII CGCG 1 cut(s) 96
AciI CCGC 2 cut(s) 94, 371
AclWI GGATC 3 cut(s) 50, 68, 709
AcoI YGGCCR 1 cut(s) 372
AcuI CTGAAG 2 cut(s) 38, 366
AfaI GTAC 4 cut(s) 476, 497, 684, 708
AfiI CCNNNNNNNGG 1 cut(s) 643
AflII CTTAAG 1 cut(s) 686
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 4 cut(s) 28, 278, 603, 698
AhdI GACNNNNNGTC 1 cut(s) 196
AjnI CCWGG 1 cut(s) 717
AluBI AGCT 7 cut(s) 16, 168, 274, 386, 596, 655, 800
AluI AGCT 7 cut(s) 16, 168, 274, 386, 596, 655, 800
Alw26I GTCTC 4 cut(s) 116, 318, 588, 778
AlwI GGATC 3 cut(s) 50, 68, 709
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 2 cut(s) 372, 393
ApeKI GCWGC 3 cut(s) 521, 542, 626
AseI ATTAAT 1 cut(s) 555
Asp700I GAANNNNTTC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 808
AspS9I GGNCC 1 cut(s) 634
AsuHPI GGTGA 1 cut(s) 293
AsuII TTCGAA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 634
BanI GGYRCC 1 cut(s) 479
BauI CACGAG 1 cut(s) 585
BbvCI CCTCAGC 1 cut(s) 801
BbvI GCAGC 3 cut(s) 508, 529, 613
BccI CCATC 1 cut(s) 313
BceAI ACGGC 2 cut(s) 493, 665
BciT130I CCWGG 1 cut(s) 719
BcoDI GTCTC 4 cut(s) 116, 318, 588, 778
BfaI CTAG 1 cut(s) 656
BfrI CTTAAG 1 cut(s) 686
BfuAI ACCTGC 2 cut(s) 211, 799
BglI GCCNNNNNGGC 1 cut(s) 368
BisI GCNGC 4 cut(s) 372, 522, 543, 627
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 4 cut(s) 373, 523, 544, 628
Bme1390I CCNGG 1 cut(s) 719
Bme18I GGWCC 1 cut(s) 634
BmeRI GACNNNNNGTC 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 634
BmiI GGNNCC 2 cut(s) 294, 481
BmrFI CCNGG 1 cut(s) 719
BmsI GCATC 6 cut(s) 338, 349, 439, 523, 656, 856
Bpu10I CCTNAGC 1 cut(s) 801
Bpu1102I GCTNAGC 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 161, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 643
Bse1I ACTGG 1 cut(s) 489
BseBI CCWGG 1 cut(s) 719
BseDI CCNNGG 2 cut(s) 161, 375
BseLI CCNNNNNNNGG 1 cut(s) 643
BseMII CTCAG 4 cut(s) 201, 326, 429, 792
BseNI ACTGG 1 cut(s) 489
BseRI GAGGAG 4 cut(s) 178, 194, 218, 300
BseXI GCAGC 3 cut(s) 508, 529, 613
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 2 cut(s) 374, 395
BshNI GGYRCC 1 cut(s) 479
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 643
BsmAI GTCTC 4 cut(s) 116, 318, 588, 778
BsmBI CGTCTC 1 cut(s) 318
BsnI GGCC 2 cut(s) 374, 395
BsoBI CYCGRG 1 cut(s) 269
Bsp119I TTCGAA 1 cut(s) 155
Bsp1407I TGTACA 2 cut(s) 495, 706
Bsp143I GATC 4 cut(s) 55, 73, 265, 714
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 2 cut(s) 94, 371
BspANI GGCC 2 cut(s) 374, 395
BspCNI CTCAG 4 cut(s) 202, 325, 430, 793
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 294, 481
BspMI ACCTGC 2 cut(s) 211, 799
BspPI GGATC 3 cut(s) 50, 68, 709
BspT104I TTCGAA 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 479
BspTI CTTAAG 1 cut(s) 686
BsrGI TGTACA 2 cut(s) 495, 706
BsrI ACTGG 1 cut(s) 489
BssECI CCNNGG 2 cut(s) 161, 375
BssMI GATC 4 cut(s) 55, 73, 265, 714
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 1 cut(s) 375
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 1 cut(s) 719
Bst4CI ACNGT 3 cut(s) 124, 356, 728
Bst6I CTCTTC 4 cut(s) 234, 243, 342, 615
BstAFI CTTAAG 1 cut(s) 686
BstAUI TGTACA 2 cut(s) 495, 706
BstBI TTCGAA 1 cut(s) 155
BstC8I GCNNGC 2 cut(s) 139, 369
BstDEI CTNAG 4 cut(s) 210, 312, 438, 801
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 808
BstKTI GATC 4 cut(s) 58, 76, 268, 717
BstMAI GTCTC 4 cut(s) 116, 318, 588, 778
BstMBI GATC 4 cut(s) 55, 73, 265, 714
BstMWI GCNNNNNNNGC 4 cut(s) 28, 368, 392, 542
BstNI CCWGG 1 cut(s) 719
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 717
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 3 cut(s) 508, 529, 613
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
BsuRI GGCC 2 cut(s) 374, 395
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 4 cut(s) 50, 342, 435, 496
BveI ACCTGC 2 cut(s) 211, 799
Cac8I GCNNGC 2 cut(s) 139, 369
CfoI GCGC 1 cut(s) 808
Cfr13I GGNCC 1 cut(s) 634
CseI GACGC 1 cut(s) 335
Csp6I GTAC 4 cut(s) 475, 496, 683, 707
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviAII CATG 2 cut(s) 196, 227
CviQI GTAC 4 cut(s) 475, 496, 683, 707
DdeI CTNAG 4 cut(s) 210, 312, 438, 801
DpnI GATC 4 cut(s) 57, 75, 267, 716
DpnII GATC 4 cut(s) 55, 73, 265, 714
DriI GACNNNNNGTC 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 4 cut(s) 234, 243, 342, 615
Eam1105I GACNNNNNGTC 1 cut(s) 196
EarI CTCTTC 4 cut(s) 234, 243, 342, 615
Eco130I CCWWGG 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 634
Eco57I CTGAAG 2 cut(s) 38, 366
Eco88I CYCGRG 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 634
EcoRII CCWGG 1 cut(s) 717
EcoT14I CCWWGG 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 375
Esp3I CGTCTC 1 cut(s) 318
FaeI CATG 2 cut(s) 199, 230
FatI CATG 2 cut(s) 195, 226
Fnu4HI GCNGC 4 cut(s) 372, 522, 543, 627
Fsp4HI GCNGC 4 cut(s) 372, 522, 543, 627
FspBI CTAG 1 cut(s) 656
GlaI GCGC 1 cut(s) 807
GluI GCNGC 4 cut(s) 372, 522, 543, 627
HaeIII GGCC 2 cut(s) 374, 395
HapII CCGG 1 cut(s) 215
HgaI GACGC 1 cut(s) 335
HhaI GCGC 1 cut(s) 808
Hin1II CATG 2 cut(s) 199, 230
Hin6I GCGC 1 cut(s) 806
HinP1I GCGC 1 cut(s) 806
HinfI GANTC 4 cut(s) 109, 152, 260, 563
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 2 cut(s) 496, 709
Hpy188I TCNGA 6 cut(s) 55, 202, 265, 315, 403, 863
Hpy188III TCNNGA 4 cut(s) 233, 269, 530, 560
Hpy8I GTNNAC 2 cut(s) 496, 709
Hpy99I CGWCG 5 cut(s) 41, 191, 194, 732, 795
HpyAV CCTTC 6 cut(s) 87, 97, 138, 272, 398, 685
HpyCH4III ACNGT 3 cut(s) 124, 356, 728
HpyCH4IV ACGT 1 cut(s) 790
HpyCH4V TGCA 3 cut(s) 48, 629, 847
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 368, 392, 542
HpyF3I CTNAG 4 cut(s) 210, 312, 438, 801
HpySE526I ACGT 1 cut(s) 790
Hsp92II CATG 2 cut(s) 199, 230
HspAI GCGC 1 cut(s) 806
Kzo9I GATC 4 cut(s) 55, 73, 265, 714
LmnI GCTCC 3 cut(s) 165, 217, 292
Lsp1109I GCAGC 3 cut(s) 508, 529, 613
LweI GCATC 6 cut(s) 338, 349, 439, 523, 656, 856
MaeI CTAG 1 cut(s) 656
MaeII ACGT 1 cut(s) 790
MaeIII GTNAC 3 cut(s) 281, 340, 407
MalI GATC 4 cut(s) 57, 75, 267, 716
MboI GATC 4 cut(s) 55, 73, 265, 714
MboII GAAGA 9 cut(s) 82, 248, 251, 257, 260, 328, 359, 632, 845
MfeI CAATTG 1 cut(s) 23
MflI RGATCY 1 cut(s) 714
MluCI AATT 4 cut(s) 23, 444, 468, 613
MlyI GAGTC 2 cut(s) 118, 557
MmeI TCCRAC 1 cut(s) 180
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 2 cut(s) 555, 687
MslI CAYNNNNRTG 1 cut(s) 503
MspCI CTTAAG 1 cut(s) 686
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 719
MunI CAATTG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 719
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 4 cut(s) 28, 368, 392, 542
NdeII GATC 4 cut(s) 55, 73, 265, 714
NlaIII CATG 2 cut(s) 199, 230
NlaIV GGNNCC 2 cut(s) 294, 481
NmuCI GTSAC 2 cut(s) 281, 340
NspI RCATGY 1 cut(s) 199
NspV TTCGAA 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 269
PciI ACATGT 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 2 cut(s) 152, 260
PflFI GACNNNGTC 1 cut(s) 789
PfoI TCCNGGA 1 cut(s) 717
PkrI GCNGC 4 cut(s) 373, 523, 544, 628
PleI GAGTC 2 cut(s) 117, 557
PpsI GAGTC 2 cut(s) 117, 557
PpuMI RGGWCCY 1 cut(s) 634
PscI ACATGT 1 cut(s) 195
PshBI ATTAAT 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 717
PspGI CCWGG 1 cut(s) 717
PspN4I GGNNCC 2 cut(s) 294, 481
PspPI GGNCC 1 cut(s) 634
PspPPI RGGWCCY 1 cut(s) 634
PsrI GAACNNNNNNTAC 2 cut(s) 690, 722
PsuI RGATCY 1 cut(s) 714
PsyI GACNNNGTC 1 cut(s) 789
RsaI GTAC 4 cut(s) 476, 497, 684, 708
RsaNI GTAC 4 cut(s) 475, 496, 683, 707
RseI CAYNNNNRTG 1 cut(s) 503
SaqAI TTAA 2 cut(s) 555, 687
SatI GCNGC 4 cut(s) 372, 522, 543, 627
Sau3AI GATC 4 cut(s) 55, 73, 265, 714
Sau96I GGNCC 1 cut(s) 634
SchI GAGTC 2 cut(s) 118, 557
ScrFI CCNGG 1 cut(s) 719
SfaNI GCATC 6 cut(s) 338, 349, 439, 523, 656, 856
Sfr274I CTCGAG 1 cut(s) 269
SfuI TTCGAA 1 cut(s) 155
SinI GGWCC 1 cut(s) 634
SlaI CTCGAG 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 3 cut(s) 104, 269, 686
SmoI CTYRAG 3 cut(s) 104, 269, 686
Sse9I AATT 4 cut(s) 23, 444, 468, 613
SsiI CCGC 2 cut(s) 94, 371
SspMI CTAG 1 cut(s) 656
StyD4I CCNGG 1 cut(s) 717
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 3 cut(s) 124, 356, 728
TaiI ACGT 1 cut(s) 793
TaqI TCGA 4 cut(s) 39, 155, 258, 270
TasI AATT 4 cut(s) 23, 444, 468, 613
TatI WGTACW 2 cut(s) 495, 706
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 2 cut(s) 152, 260
Tru1I TTAA 2 cut(s) 555, 687
Tru9I TTAA 2 cut(s) 555, 687
TscAI CASTG 4 cut(s) 50, 349, 442, 496
TseFI GTSAC 2 cut(s) 281, 340
TseI GCWGC 3 cut(s) 521, 542, 626
Tsp45I GTSAC 2 cut(s) 281, 340
TspDTI ATGAA 4 cut(s) 120, 215, 318, 521
TspGWI ACGGA 1 cut(s) 847
TspRI CASTG 4 cut(s) 50, 349, 442, 496
Tth111I GACNNNGTC 1 cut(s) 789
Vha464I CTTAAG 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 634
VspI ATTAAT 1 cut(s) 555
XceI RCATGY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.