MD04G1080700.v1.1

Heat shock chaperonin-binding motif.

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
11146402 .. 11152727
6326 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1080700.v1.1.491

Sequence Viewer

Length: 1260 bp
ATGGACGAGGCGAAGCTCAAGCAACTCAAGCATTTCGTCGAACAGTGCAAGTCCGATCCCTCCGTCCTCGCCGATCCTTCGCTCTCCTTCTTCCGCGACTACCTCGAGAGTCTCGGCGCTACTCTCCCTGCCTCTGCTCAGAAGCAAGGCGATTCCAAATCGAAGGGCTATGTCGTGGAGGAGAGCGACGACGACATGGCGGACACTGAAGCCGCTCAAGTTCATGTCGAAGAAGAGGAGGATGAGATAATCGAATCTGATGTCGAGCTCGAGGGTGACACCGTGGAGCCTGACGATGAACCTCCTCAGAAGATGGGAGATGCATCGGTTGAGGTGACTGATGAGAACCGTGATGCTGCACAGGCAGCAAAATCTAAAGCTATGGAAGCCATTTCAGAAGGTAACTTGGAGGAAGCAGTTGAACATCTCACAGAGGCGATTTTGCTCAATCCTACTTCAGCAATTATGTACGGCACCAGAGCTAGTGTGTACATCAAAATGAAAAAACCTAGTGCTGCTATCCGGGATGCCAGTGCTGCTCTTGAGGTTATCAATCCTGACTCTGCTAAAGGCTACAAGTCTCGTGGGATAGCACGAGCAATGCTTGGTCATTGGGAAGAGGCTGCTAAGGATCTTCACTTGGCATCAAAGCTTGATTATGATGAAGAAATAGGTGCTGTACTTAAGAAGGTTGAACCAAATGTGCACAGGATTGAGGAACACCGTCGCAAATATGATAGGCTTCGCAAAGAAAGAGAGGACAAAAGGATTGAGCGTGAGAGACAACGTCGCCGTGCTGAAGCTCAGGCTGCATATGAGAAGGCTAAGAAGCAAGAGCAATCATCTTCTAGTAGAAGGTCTGGAGGCATGCCTGGTGGCTTTCCAGCAGGCATGGGTGGAGGATTTCCAGGAGGAATGCCTGGTATGCCCGGTGGCTTTCCAGCAGGCATGGGTGGAGGGTTTCCAGGAGGAATGCCTGGAGGGTTTCCAGCCGGCATGGGTGGCGGCTTTCCAGGAGGTGCATCTGGAGGTGCACCTGGAGGTTTCCCCGGTACTGCGCCAGGAGGGGTGCCTGGAAATGTTGATTTTAGCAAAATATTGAATGACCCTGAACTGATGAATGCATTTAGTGATCCAGAAGTCATGGATGCTCTTCAAGACGTAATGAAGAACCCTGCTAATCTAGCAAAGCATCAAGCAAATCCAAAGGTGGCTCCTATTATTGCAAAGATGATGAGCAAATTTGCTGGACCGAAGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

420

Amino Acids

44.76

Weight (kDa)

5.05

Isoelectric Point (pI)

58.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HipN PF18253 2 - 43 3.5e-19 Hsp70-interacting protein N N-terminal domain
STI1-HOP_DP PF17830 363 - 413 1.5e-11 STI1/HOP, DP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013195)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 473, 1069
AccBSI CCGCTC 1 cut(s) 215
AccII CGCG 1 cut(s) 96
AciI CCGC 4 cut(s) 94, 200, 213, 1005
AclWI GGATC 4 cut(s) 50, 68, 639, 1127
AcsI RAATTY 1 cut(s) 1241
AcuI CTGAAG 3 cut(s) 228, 441, 819
AfaI GTAC 4 cut(s) 470, 491, 681, 1054
AflII CTTAAG 1 cut(s) 683
AgsI TTSAA 4 cut(s) 422, 695, 1102, 1157
AjnI CCWGG 9 cut(s) 871, 907, 919, 964, 976, 1012, 1036, 1060, 1072
AluBI AGCT 6 cut(s) 16, 268, 380, 482, 652, 803
AluI AGCT 6 cut(s) 16, 268, 380, 482, 652, 803
Alw21I GWGCWC 3 cut(s) 270, 708, 1036
Alw26I GTCTC 3 cut(s) 116, 585, 775
Alw44I GTGCAC 2 cut(s) 704, 1032
AlwI GGATC 4 cut(s) 50, 68, 639, 1127
Ama87I CYCGRG 2 cut(s) 104, 269
ApaLI GTGCAC 2 cut(s) 704, 1032
ApeKI GCWGC 6 cut(s) 356, 365, 515, 536, 623, 809
ApoI RAATTY 1 cut(s) 1241
ArsI GACNNNNNNTTYG 2 cut(s) 246, 278
AspLEI GCGC 2 cut(s) 119, 1060
AspS9I GGNCC 1 cut(s) 1250
AsuC2I CCSGG 3 cut(s) 524, 930, 1050
AsuHPI GGTGA 2 cut(s) 287, 346
AvaI CYCGRG 2 cut(s) 104, 269
AvaII GGWCC 1 cut(s) 1250
BaeGI GKGCMC 2 cut(s) 708, 1036
BanI GGYRCC 2 cut(s) 473, 1069
BanII GRGCYC 1 cut(s) 270
BauI CACGAG 2 cut(s) 582, 594
Bbv12I GWGCWC 3 cut(s) 270, 708, 1036
BbvI GCAGC 6 cut(s) 343, 377, 502, 523, 610, 796
BccI CCATC 1 cut(s) 307
BceAI ACGGC 2 cut(s) 487, 777
BciT130I CCWGG 9 cut(s) 873, 909, 921, 966, 978, 1014, 1038, 1062, 1074
BcnI CCSGG 3 cut(s) 524, 930, 1050
BcoDI GTCTC 3 cut(s) 116, 585, 775
BfaI CTAG 4 cut(s) 483, 510, 849, 1184
BfoI RGCGCY 1 cut(s) 120
BfrI CTTAAG 1 cut(s) 683
BisI GCNGC 8 cut(s) 213, 357, 366, 516, 537, 624, 810, 1006
BlsI GCNGC 8 cut(s) 214, 358, 367, 517, 538, 625, 811, 1007
Bme18I GGWCC 1 cut(s) 1250
BmeT110I CYCGRG 2 cut(s) 104, 269
BmgT120I GGNCC 1 cut(s) 1250
BmiI GGNNCC 4 cut(s) 288, 475, 1071, 1215
BmsI GCATC 8 cut(s) 310, 332, 343, 517, 653, 1031, 1138, 1201
BpmI CTGGAG 4 cut(s) 882, 999, 1047, 1059
Bpu10I CCTNAGC 2 cut(s) 627, 804
BpuEI CTTGAG 3 cut(s) 11, 201, 563
BpuMI CCSGG 3 cut(s) 524, 930, 1050
BsaJI CCNNGG 2 cut(s) 282, 1048
Bse118I RCCGGY 1 cut(s) 992
Bse1I ACTGG 1 cut(s) 531
Bse3DI GCAATG 1 cut(s) 606
BseBI CCWGG 9 cut(s) 873, 909, 921, 966, 978, 1014, 1038, 1062, 1074
BseDI CCNNGG 2 cut(s) 282, 1048
BseGI GGATG 3 cut(s) 247, 532, 1153
BseMI GCAATG 1 cut(s) 606
BseMII CTCAG 3 cut(s) 152, 320, 818
BseNI ACTGG 1 cut(s) 531
BseRI GAGGAG 3 cut(s) 194, 251, 294
BseSI GKGCMC 2 cut(s) 708, 1036
BseXI GCAGC 6 cut(s) 343, 377, 502, 523, 610, 796
BsgI GTGCAG 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 96
BshNI GGYRCC 2 cut(s) 473, 1069
BsiHKAI GWGCWC 3 cut(s) 270, 708, 1036
BsiHKCI CYCGRG 2 cut(s) 104, 269
BsiSI CCGG 4 cut(s) 523, 930, 993, 1050
BsmAI GTCTC 3 cut(s) 116, 585, 775
BsmI GAATGC 3 cut(s) 921, 978, 1126
BsoBI CYCGRG 2 cut(s) 104, 269
Bsp1286I GDGCHC 3 cut(s) 270, 708, 1036
Bsp1407I TGTACA 1 cut(s) 489
Bsp143I GATC 4 cut(s) 55, 73, 631, 1132
BspACI CCGC 4 cut(s) 94, 200, 213, 1005
BspCNI CTCAG 3 cut(s) 151, 319, 817
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 4 cut(s) 288, 475, 1071, 1215
BspPI GGATC 4 cut(s) 50, 68, 639, 1127
BspQI GCTCTTC 1 cut(s) 1158
BspT107I GGYRCC 2 cut(s) 473, 1069
BspTI CTTAAG 1 cut(s) 683
BsrBI CCGCTC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 606
BsrFI RCCGGY 1 cut(s) 992
BsrGI TGTACA 1 cut(s) 489
BsrI ACTGG 1 cut(s) 531
BssAI RCCGGY 1 cut(s) 992
BssECI CCNNGG 2 cut(s) 282, 1048
BssMI GATC 4 cut(s) 55, 73, 631, 1132
BssSI CACGAG 2 cut(s) 582, 594
Bst2BI CACGAG 2 cut(s) 582, 594
Bst2UI CCWGG 9 cut(s) 873, 909, 921, 966, 978, 1014, 1038, 1062, 1074
Bst4CI ACNGT 4 cut(s) 45, 283, 350, 725
Bst6I CTCTTC 3 cut(s) 228, 612, 1158
BstAFI CTTAAG 1 cut(s) 683
BstAUI TGTACA 1 cut(s) 489
BstC8I GCNNGC 4 cut(s) 869, 889, 946, 994
BstDEI CTNAG 5 cut(s) 138, 306, 627, 804, 825
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 3 cut(s) 247, 532, 1153
BstFNI CGCG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 2 cut(s) 119, 1060
BstKTI GATC 4 cut(s) 58, 76, 634, 1135
BstMAI GTCTC 3 cut(s) 116, 585, 775
BstMBI GATC 4 cut(s) 55, 73, 631, 1132
BstMWI GCNNNNNNNGC 9 cut(s) 28, 362, 365, 386, 536, 809, 925, 1002, 1184
BstNI CCWGG 9 cut(s) 873, 909, 921, 966, 978, 1014, 1038, 1062, 1074
BstNSI RCATGY 1 cut(s) 871
BstSLI GKGCMC 2 cut(s) 708, 1036
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 6 cut(s) 343, 377, 502, 523, 610, 796
BstX2I RGATCY 1 cut(s) 631
BstYI RGATCY 1 cut(s) 631
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 3 cut(s) 247, 532, 1153
BtsIMutI CAGTG 3 cut(s) 50, 204, 538
Cac8I GCNNGC 4 cut(s) 869, 889, 946, 994
CfoI GCGC 2 cut(s) 119, 1060
Cfr10I RCCGGY 1 cut(s) 992
Cfr13I GGNCC 1 cut(s) 1250
Csp6I GTAC 4 cut(s) 469, 490, 680, 1053
CspCI CAANNNNNGTGG 2 cut(s) 565, 600
CviAII CATG 7 cut(s) 196, 224, 868, 892, 949, 997, 1144
CviQI GTAC 4 cut(s) 469, 490, 680, 1053
DdeI CTNAG 5 cut(s) 138, 306, 627, 804, 825
DpnI GATC 4 cut(s) 57, 75, 633, 1134
DpnII GATC 4 cut(s) 55, 73, 631, 1132
Eam1104I CTCTTC 3 cut(s) 228, 612, 1158
EarI CTCTTC 3 cut(s) 228, 612, 1158
EciI GGCGGA 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 1250
Eco53kI GAGCTC 1 cut(s) 268
Eco57I CTGAAG 3 cut(s) 228, 441, 819
Eco88I CYCGRG 2 cut(s) 104, 269
EcoICRI GAGCTC 1 cut(s) 268
EcoRII CCWGG 9 cut(s) 871, 907, 919, 964, 976, 1012, 1036, 1060, 1072
EcoT22I ATGCAT 2 cut(s) 325, 1126
EcoT38I GRGCYC 1 cut(s) 270
FaeI CATG 7 cut(s) 199, 227, 871, 895, 952, 1000, 1147
FatI CATG 7 cut(s) 195, 223, 867, 891, 948, 996, 1143
FauNDI CATATG 1 cut(s) 814
Fnu4HI GCNGC 8 cut(s) 213, 357, 366, 516, 537, 624, 810, 1006
FokI GGATG 3 cut(s) 254, 539, 1160
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 8 cut(s) 213, 357, 366, 516, 537, 624, 810, 1006
FspBI CTAG 4 cut(s) 483, 510, 849, 1184
GlaI GCGC 2 cut(s) 118, 1059
GluI GCNGC 8 cut(s) 213, 357, 366, 516, 537, 624, 810, 1006
GsuI CTGGAG 4 cut(s) 882, 999, 1047, 1059
HaeII RGCGCY 1 cut(s) 120
HapII CCGG 4 cut(s) 523, 930, 993, 1050
HhaI GCGC 2 cut(s) 119, 1060
Hin1II CATG 7 cut(s) 199, 227, 871, 895, 952, 1000, 1147
Hin6I GCGC 2 cut(s) 117, 1058
HinP1I GCGC 2 cut(s) 117, 1058
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 4 cut(s) 109, 152, 254, 560
HpaII CCGG 4 cut(s) 523, 930, 993, 1050
HphI GGTGA 2 cut(s) 287, 346
Hpy166II GTNNAC 3 cut(s) 490, 706, 1034
Hpy188I TCNGA 5 cut(s) 55, 141, 259, 309, 397
Hpy188III TCNNGA 7 cut(s) 106, 542, 557, 861, 1026, 1136, 1157
Hpy8I GTNNAC 3 cut(s) 490, 706, 1034
Hpy99I CGWCG 5 cut(s) 41, 191, 194, 729, 792
HpyAV CCTTC 7 cut(s) 87, 97, 157, 392, 682, 814, 849
HpyCH4III ACNGT 4 cut(s) 45, 283, 350, 725
HpyCH4IV ACGT 2 cut(s) 787, 1161
HpyCH4V TGCA 9 cut(s) 48, 323, 359, 706, 812, 1022, 1034, 1124, 1226
HpyF10VI GCNNNNNNNGC 9 cut(s) 28, 362, 365, 386, 536, 809, 925, 1002, 1184
HpyF3I CTNAG 5 cut(s) 138, 306, 627, 804, 825
HpySE526I ACGT 2 cut(s) 787, 1161
Hsp92II CATG 7 cut(s) 199, 227, 871, 895, 952, 1000, 1147
HspAI GCGC 2 cut(s) 117, 1058
KroI GCCGGC 1 cut(s) 992
KroNI GCCGGC 1 cut(s) 994
Kzo9I GATC 4 cut(s) 55, 73, 631, 1132
LguI GCTCTTC 1 cut(s) 1158
LmnI GCTCC 2 cut(s) 286, 1219
Lsp1109I GCAGC 6 cut(s) 343, 377, 502, 523, 610, 796
LweI GCATC 8 cut(s) 310, 332, 343, 517, 653, 1031, 1138, 1201
MaeI CTAG 4 cut(s) 483, 510, 849, 1184
MaeII ACGT 2 cut(s) 787, 1161
MaeIII GTNAC 3 cut(s) 275, 334, 401
MalI GATC 4 cut(s) 57, 75, 633, 1134
MbiI CCGCTC 1 cut(s) 215
MboI GATC 4 cut(s) 55, 73, 631, 1132
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 3 cut(s) 270, 708, 1036
MluCI AATT 2 cut(s) 462, 1241
MlyI GAGTC 2 cut(s) 118, 554
Mph1103I ATGCAT 2 cut(s) 325, 1126
MroNI GCCGGC 1 cut(s) 992
MseI TTAA 1 cut(s) 684
MslI CAYNNNNRTG 1 cut(s) 497
MspCI CTTAAG 1 cut(s) 683
MspI CCGG 4 cut(s) 523, 930, 993, 1050
Mva1269I GAATGC 3 cut(s) 921, 978, 1126
MvaI CCWGG 9 cut(s) 873, 909, 921, 966, 978, 1014, 1038, 1062, 1074
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 9 cut(s) 28, 362, 365, 386, 536, 809, 925, 1002, 1184
NaeI GCCGGC 1 cut(s) 994
NciI CCSGG 3 cut(s) 524, 930, 1050
NdeI CATATG 1 cut(s) 814
NdeII GATC 4 cut(s) 55, 73, 631, 1132
NgoMIV GCCGGC 1 cut(s) 992
NlaIII CATG 7 cut(s) 199, 227, 871, 895, 952, 1000, 1147
NlaIV GGNNCC 4 cut(s) 288, 475, 1071, 1215
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 2 cut(s) 275, 334
NsiI ATGCAT 2 cut(s) 325, 1126
NspI RCATGY 1 cut(s) 871
PaeI GCATGC 1 cut(s) 871
PaeR7I CTCGAG 2 cut(s) 104, 269
PciSI GCTCTTC 1 cut(s) 1158
PctI GAATGC 3 cut(s) 921, 978, 1126
PdiI GCCGGC 1 cut(s) 994
PfeI GAWTC 2 cut(s) 152, 254
PflFI GACNNNGTC 1 cut(s) 786
PfoI TCCNGGA 4 cut(s) 522, 907, 964, 1012
PkrI GCNGC 8 cut(s) 214, 358, 367, 517, 538, 625, 811, 1007
PleI GAGTC 2 cut(s) 117, 554
PpsI GAGTC 2 cut(s) 117, 554
Psp124BI GAGCTC 1 cut(s) 270
Psp6I CCWGG 9 cut(s) 871, 907, 919, 964, 976, 1012, 1036, 1060, 1072
PspGI CCWGG 9 cut(s) 871, 907, 919, 964, 976, 1012, 1036, 1060, 1072
PspN4I GGNNCC 4 cut(s) 288, 475, 1071, 1215
PspPI GGNCC 1 cut(s) 1250
PspXI VCTCGAGB 1 cut(s) 269
PsuI RGATCY 1 cut(s) 631
PsyI GACNNNGTC 1 cut(s) 786
RsaI GTAC 4 cut(s) 470, 491, 681, 1054
RsaNI GTAC 4 cut(s) 469, 490, 680, 1053
RseI CAYNNNNRTG 1 cut(s) 497
SacI GAGCTC 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 1158
SaqAI TTAA 1 cut(s) 684
SatI GCNGC 8 cut(s) 213, 357, 366, 516, 537, 624, 810, 1006
Sau3AI GATC 4 cut(s) 55, 73, 631, 1132
Sau96I GGNCC 1 cut(s) 1250
SchI GAGTC 2 cut(s) 118, 554
SduI GDGCHC 3 cut(s) 270, 708, 1036
SfaNI GCATC 8 cut(s) 310, 332, 343, 517, 653, 1031, 1138, 1201
Sfr274I CTCGAG 2 cut(s) 104, 269
SinI GGWCC 1 cut(s) 1250
SlaI CTCGAG 2 cut(s) 104, 269
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 7 cut(s) 17, 26, 104, 216, 269, 542, 683
SmoI CTYRAG 7 cut(s) 17, 26, 104, 216, 269, 542, 683
SphI GCATGC 1 cut(s) 871
Sse9I AATT 2 cut(s) 462, 1241
SsiI CCGC 4 cut(s) 94, 200, 213, 1005
SspI AATATT 1 cut(s) 1098
SspMI CTAG 4 cut(s) 483, 510, 849, 1184
SstI GAGCTC 1 cut(s) 270
TaaI ACNGT 4 cut(s) 45, 283, 350, 725
TaiI ACGT 2 cut(s) 790, 1164
TaqI TCGA 7 cut(s) 39, 105, 161, 228, 252, 264, 270
TasI AATT 2 cut(s) 462, 1241
TatI WGTACW 2 cut(s) 489, 679
TauI GCSGC 2 cut(s) 215, 1008
TfiI GAWTC 2 cut(s) 152, 254
Tru1I TTAA 1 cut(s) 684
Tru9I TTAA 1 cut(s) 684
TscAI CASTG 3 cut(s) 50, 211, 538
TseFI GTSAC 2 cut(s) 275, 334
TseI GCWGC 6 cut(s) 356, 365, 515, 536, 623, 809
Tsp45I GTSAC 2 cut(s) 275, 334
TspDTI ATGAA 6 cut(s) 212, 312, 515, 678, 1133, 1181
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 3 cut(s) 50, 211, 538
Tth111I GACNNNGTC 1 cut(s) 786
Vha464I CTTAAG 1 cut(s) 683
VneI GTGCAC 2 cut(s) 704, 1032
VpaK11BI GGWCC 1 cut(s) 1250
XapI RAATTY 1 cut(s) 1241
XceI RCATGY 1 cut(s) 871
XhoI CTCGAG 2 cut(s) 104, 269
XspI CTAG 4 cut(s) 483, 510, 849, 1184
Zsp2I ATGCAT 2 cut(s) 325, 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.