FvH4_5g00470

Heat shock chaperonin-binding motif.

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
300275 .. 305263
4989 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00470.t2

Sequence Viewer

Length: 1272 bp
ATGGAGGAGGCGCAGCTGAACCAGTTGAAGCAGTTCGTCGAGCAGTGCAAGTCCGATCCCTCCGTTCTCGCCGATCCTTCCCTCTCCTTCTTCCGCGATTACCTCGAAAGTCTCGGAGCTACTGTGCCTTCCTCTGCTAGCAACAAGGAAGATTCGAAACCGAGGAGCTATGTAGTGGAGGAGAGCGACGACGACATGTCGGAGGAGGCTGAGCCGGAGCCGGTTCATGTTCAGGAAGAAGAGGAAGAAGAGATAGTCGAATCTGATCTCGAGCTCGAAGGCGACATTGTGGAGCCTGACGATGAGCCTCCTCAGAAGATGGGAGACGCATCGGTCGAGGTCACTGAAGAGAACCGTGATGCCTCGCAGGCGGCCAAGGGTAAAGCTATGGAGGCCATTTCAGAAGGTAACTTGGACGAAGCCATTGAGCATCTTACTGAGGCAATTTTGCTCAATCCTACTTCGGCTATTATGTACAGCACCAGAGCCAGTGTATACATAAAAATGAAAAAACCTAATGCCGCCATCCGTGATGCCAACGCTGCTCTTGAGATCAATCCTGACTCTGCTAAAGGCTACAAATCTCGTGGCATAGCTCATTCAATGCTTGGTAATTGGGAAGAGGCTGCGAAGGATCTCCACTTGGCATCAAAGCTAGACTTTGATGAGGAAATTAGTGCCGTACTTAAGAAGGTTGAACCAAATGTACACAGGATTCAGGAACACCGTCGTAAGTATGACAGGCTTCGAAAGGAAAGAGAGGACAGAAAGATTGAGCGTGACAGACAACGTCGCAAAGCTGAGGCCCAGGCTGCATATGAGAAGGCTAAGAAGAAAGAGCAGTCGTCTTCTAGTAGAAGACCTGGAGGCTTTCCTGGTGGAATGCCTGGAGGCTTCCCAGGAGGGATGCCAGGTGGTTTTCCAGGGGCAGGAGGTATGCCAGGTGGTTTTCCAGGGGCAGGAGGTATGCCAGGTGGTTTTCCAGGGGCAGGAGGGATGCCAGGTGGCTTTCCAGGCGCAGGAGGAATGCCTGGAGGCTTTCCAGGGGCAGGAGGTGCACCTGGAGGCTCTGCAGGAGGGGCTCCTGGAAACATTGACTTCAGCAAAATATTAAATGACCCAGAAATGATGGCTGCATTTAATGATCCAGAAGTTATGTCTGCTCTGCAAGATGTGATGAAGAACCCTGCTAATCTAGCAAAGCATCAAGAAAATCCCAAGGTGGCTCCTATTATTGCTAAGATGATGAGCAAATTTGGTGGACCAAAGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

424

Amino Acids

45.22

Weight (kDa)

4.89

Isoelectric Point (pI)

64.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HipN PF18253 3 - 43 1.3e-19 Hsp70-interacting protein N N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013195)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AccI GTMKAC 1 cut(s) 495
AccII CGCG 1 cut(s) 96
AciI CCGC 3 cut(s) 94, 371, 522
AclWI GGATC 4 cut(s) 50, 68, 642, 1139
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 1 cut(s) 1253
AcuI CTGAAG 2 cut(s) 366, 1084
AfaI GTAC 3 cut(s) 476, 684, 708
AfiI CCNNNNNNNGG 5 cut(s) 929, 959, 989, 1019, 1049
AflII CTTAAG 1 cut(s) 686
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 3 cut(s) 28, 603, 698
AhdI GACNNNNNGTC 1 cut(s) 196
AluBI AGCT 8 cut(s) 16, 119, 168, 274, 386, 596, 655, 800
AluI AGCT 8 cut(s) 16, 119, 168, 274, 386, 596, 655, 800
Alw21I GWGCWC 2 cut(s) 276, 1060
Alw26I GTCTC 2 cut(s) 116, 318
Alw44I GTGCAC 1 cut(s) 1056
AlwI GGATC 4 cut(s) 50, 68, 642, 1139
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 3 cut(s) 372, 393, 804
ApaLI GTGCAC 1 cut(s) 1056
ApeKI GCWGC 5 cut(s) 13, 542, 626, 812, 1133
ApoI RAATTY 1 cut(s) 1253
Asp700I GAANNNNTTC 1 cut(s) 32
AspLEI GCGC 2 cut(s) 13, 1019
AspS9I GGNCC 2 cut(s) 805, 1262
AsuII TTCGAA 2 cut(s) 155, 748
AsuNHI GCTAGC 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 1262
BaeGI GKGCMC 1 cut(s) 1060
BanII GRGCYC 2 cut(s) 276, 1084
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 2 cut(s) 840, 865
Bbv12I GWGCWC 2 cut(s) 276, 1060
BbvCI CCTCAGC 1 cut(s) 801
BbvI GCAGC 5 cut(s) 25, 529, 613, 799, 1120
BccI CCATC 3 cut(s) 313, 533, 1123
BceAI ACGGC 1 cut(s) 665
BcoDI GTCTC 2 cut(s) 116, 318
BfaI CTAG 4 cut(s) 138, 656, 852, 1196
BfmI CTRYAG 1 cut(s) 1071
BfrI CTTAAG 1 cut(s) 686
BglI GCCNNNNNGGC 1 cut(s) 368
BisI GCNGC 7 cut(s) 14, 372, 522, 543, 627, 813, 1134
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 7 cut(s) 15, 373, 523, 544, 628, 814, 1135
Bme18I GGWCC 1 cut(s) 1262
BmeRI GACNNNNNGTC 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 805, 1262
BmiI GGNNCC 4 cut(s) 219, 294, 1083, 1227
BmsI GCATC 8 cut(s) 338, 349, 439, 523, 656, 897, 987, 1213
BmtI GCTAGC 1 cut(s) 141
BpiI GAAGAC 2 cut(s) 840, 865
BpmI CTGGAG 4 cut(s) 885, 909, 1053, 1083
Bpu10I CCTNAGC 1 cut(s) 801
Bpu1102I GCTNAGC 1 cut(s) 210
Bpu14I TTCGAA 2 cut(s) 155, 748
BpuEI CTTGAG 1 cut(s) 569
BsaJI CCNNGG 9 cut(s) 161, 375, 807, 898, 923, 953, 983, 1043, 1218
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 5 cut(s) 929, 959, 989, 1019, 1049
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 2 cut(s) 22, 489
BseDI CCNNGG 9 cut(s) 161, 375, 807, 898, 923, 953, 983, 1043, 1218
BseGI GGATG 3 cut(s) 525, 912, 1002
BseLI CCNNNNNNNGG 5 cut(s) 929, 959, 989, 1019, 1049
BseMII CTCAG 4 cut(s) 201, 326, 429, 792
BseNI ACTGG 2 cut(s) 22, 489
BseRI GAGGAG 5 cut(s) 20, 178, 194, 218, 300
BseSI GKGCMC 1 cut(s) 1060
BseXI GCAGC 5 cut(s) 25, 529, 613, 799, 1120
Bsh1236I CGCG 1 cut(s) 96
Bsh1285I CGRYCG 1 cut(s) 336
BshFI GGCC 3 cut(s) 374, 395, 806
BsiEI CGRYCG 1 cut(s) 336
BsiHKAI GWGCWC 2 cut(s) 276, 1060
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 2 cut(s) 215, 221
BslI CCNNNNNNNGG 5 cut(s) 929, 959, 989, 1019, 1049
BsmAI GTCTC 2 cut(s) 116, 318
BsmBI CGTCTC 1 cut(s) 318
BsmI GAATGC 2 cut(s) 888, 1032
BsnI GGCC 3 cut(s) 374, 395, 806
BsoBI CYCGRG 1 cut(s) 269
Bsp119I TTCGAA 2 cut(s) 155, 748
Bsp1286I GDGCHC 3 cut(s) 276, 1060, 1084
Bsp1407I TGTACA 2 cut(s) 474, 706
Bsp143I GATC 6 cut(s) 55, 73, 265, 552, 634, 1144
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 3 cut(s) 94, 371, 522
BspANI GGCC 3 cut(s) 374, 395, 806
BspCNI CTCAG 4 cut(s) 202, 325, 430, 793
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 4 cut(s) 219, 294, 1083, 1227
BspMAI CTGCAG 1 cut(s) 1075
BspOI GCTAGC 1 cut(s) 141
BspPI GGATC 4 cut(s) 50, 68, 642, 1139
BspT104I TTCGAA 2 cut(s) 155, 748
BspTI CTTAAG 1 cut(s) 686
BsrFI RCCGGY 1 cut(s) 220
BsrGI TGTACA 2 cut(s) 474, 706
BsrI ACTGG 2 cut(s) 22, 489
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 9 cut(s) 161, 375, 807, 898, 923, 953, 983, 1043, 1218
BssMI GATC 6 cut(s) 55, 73, 265, 552, 634, 1144
BssNAI GTATAC 1 cut(s) 496
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 2 cut(s) 375, 1218
Bst1107I GTATAC 1 cut(s) 496
Bst2BI CACGAG 1 cut(s) 585
Bst4CI ACNGT 3 cut(s) 124, 356, 728
Bst6I CTCTTC 4 cut(s) 234, 243, 342, 615
BstAFI CTTAAG 1 cut(s) 686
BstAPI GCANNNNNTGC 1 cut(s) 1055
BstAUI TGTACA 2 cut(s) 474, 706
BstBI TTCGAA 2 cut(s) 155, 748
BstC8I GCNNGC 2 cut(s) 139, 369
BstDEI CTNAG 6 cut(s) 210, 312, 438, 801, 828, 1239
BstF5I GGATG 3 cut(s) 525, 912, 1002
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 2 cut(s) 13, 1019
BstKTI GATC 6 cut(s) 58, 76, 268, 555, 637, 1147
BstMAI GTCTC 2 cut(s) 116, 318
BstMBI GATC 6 cut(s) 55, 73, 265, 552, 634, 1144
BstMCI CGRYCG 1 cut(s) 336
BstMWI GCNNNNNNNGC 8 cut(s) 368, 392, 542, 812, 1014, 1055, 1079, 1196
BstNSI RCATGY 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 1071
BstSLI GKGCMC 1 cut(s) 1060
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 5 cut(s) 25, 529, 613, 799, 1120
BstV2I GAAGAC 2 cut(s) 840, 865
BstX2I RGATCY 1 cut(s) 634
BstYI RGATCY 1 cut(s) 634
BstZ17I GTATAC 1 cut(s) 496
BsuRI GGCC 3 cut(s) 374, 395, 806
BtsCI GGATG 3 cut(s) 525, 912, 1002
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 3 cut(s) 50, 342, 496
Cac8I GCNNGC 2 cut(s) 139, 369
CfoI GCGC 2 cut(s) 13, 1019
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 805, 1262
CseI GACGC 1 cut(s) 335
Csp6I GTAC 3 cut(s) 475, 683, 707
CspCI CAANNNNNGTGG 3 cut(s) 568, 603, 1240
CviAII CATG 2 cut(s) 196, 227
CviQI GTAC 3 cut(s) 475, 683, 707
DdeI CTNAG 6 cut(s) 210, 312, 438, 801, 828, 1239
DpnI GATC 6 cut(s) 57, 75, 267, 554, 636, 1146
DpnII GATC 6 cut(s) 55, 73, 265, 552, 634, 1144
DrdI GACNNNNNNGTC 1 cut(s) 332
DriI GACNNNNNGTC 1 cut(s) 196
DseDI GACNNNNNNGTC 1 cut(s) 332
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 4 cut(s) 234, 243, 342, 615
Eam1105I GACNNNNNGTC 1 cut(s) 196
EarI CTCTTC 4 cut(s) 234, 243, 342, 615
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 2 cut(s) 375, 1218
Eco24I GRGCYC 2 cut(s) 276, 1084
Eco47I GGWCC 1 cut(s) 1262
Eco53kI GAGCTC 1 cut(s) 274
Eco57I CTGAAG 2 cut(s) 366, 1084
Eco88I CYCGRG 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 274
EcoT14I CCWWGG 2 cut(s) 375, 1218
EcoT38I GRGCYC 2 cut(s) 276, 1084
ErhI CCWWGG 2 cut(s) 375, 1218
Esp3I CGTCTC 1 cut(s) 318
FaeI CATG 2 cut(s) 199, 230
FalI AAGNNNNNCTT 2 cut(s) 644, 676
FatI CATG 2 cut(s) 195, 226
FauNDI CATATG 1 cut(s) 817
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 7 cut(s) 14, 372, 522, 543, 627, 813, 1134
FokI GGATG 3 cut(s) 512, 919, 1009
FriOI GRGCYC 2 cut(s) 276, 1084
Fsp4HI GCNGC 7 cut(s) 14, 372, 522, 543, 627, 813, 1134
FspBI CTAG 4 cut(s) 138, 656, 852, 1196
GlaI GCGC 2 cut(s) 12, 1018
GluI GCNGC 7 cut(s) 14, 372, 522, 543, 627, 813, 1134
GsuI CTGGAG 4 cut(s) 885, 909, 1053, 1083
HaeIII GGCC 3 cut(s) 374, 395, 806
HapII CCGG 2 cut(s) 215, 221
HgaI GACGC 1 cut(s) 335
HhaI GCGC 2 cut(s) 13, 1019
Hin1II CATG 2 cut(s) 199, 230
Hin6I GCGC 2 cut(s) 11, 1017
HinP1I GCGC 2 cut(s) 11, 1017
HinfI GANTC 4 cut(s) 152, 260, 563, 715
HpaII CCGG 2 cut(s) 215, 221
Hpy166II GTNNAC 4 cut(s) 496, 709, 1058, 1262
Hpy188I TCNGA 6 cut(s) 55, 116, 202, 265, 315, 403
Hpy188III TCNNGA 7 cut(s) 233, 269, 548, 560, 719, 1148, 1208
Hpy8I GTNNAC 4 cut(s) 496, 709, 1058, 1262
Hpy99I CGWCG 5 cut(s) 41, 191, 194, 732, 795
HpyAV CCTTC 8 cut(s) 87, 97, 138, 272, 398, 625, 685, 817
HpyCH4III ACNGT 3 cut(s) 124, 356, 728
HpyCH4IV ACGT 1 cut(s) 790
HpyCH4V TGCA 6 cut(s) 48, 815, 1058, 1073, 1136, 1168
HpyF10VI GCNNNNNNNGC 8 cut(s) 368, 392, 542, 812, 1014, 1055, 1079, 1196
HpyF3I CTNAG 6 cut(s) 210, 312, 438, 801, 828, 1239
HpySE526I ACGT 1 cut(s) 790
Hsp92II CATG 2 cut(s) 199, 230
HspAI GCGC 2 cut(s) 11, 1017
Kzo9I GATC 6 cut(s) 55, 73, 265, 552, 634, 1144
LmnI GCTCC 6 cut(s) 116, 165, 217, 292, 1087, 1231
Lsp1109I GCAGC 5 cut(s) 25, 529, 613, 799, 1120
LweI GCATC 8 cut(s) 338, 349, 439, 523, 656, 897, 987, 1213
MaeI CTAG 4 cut(s) 138, 656, 852, 1196
MaeII ACGT 1 cut(s) 790
MaeIII GTNAC 3 cut(s) 340, 407, 779
MalI GATC 6 cut(s) 57, 75, 267, 554, 636, 1146
MboI GATC 6 cut(s) 55, 73, 265, 552, 634, 1144
MflI RGATCY 1 cut(s) 634
MhlI GDGCHC 3 cut(s) 276, 1060, 1084
MluCI AATT 4 cut(s) 444, 613, 672, 1253
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 1 cut(s) 180
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 3 cut(s) 687, 1112, 1140
MslI CAYNNNNRTG 1 cut(s) 503
MspA1I CMGCKG 1 cut(s) 16
MspCI CTTAAG 1 cut(s) 686
MspI CCGG 2 cut(s) 215, 221
Mva1269I GAATGC 2 cut(s) 888, 1032
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 8 cut(s) 368, 392, 542, 812, 1014, 1055, 1079, 1196
NdeI CATATG 1 cut(s) 817
NdeII GATC 6 cut(s) 55, 73, 265, 552, 634, 1144
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 2 cut(s) 199, 230
NlaIV GGNNCC 4 cut(s) 219, 294, 1083, 1227
NmuCI GTSAC 2 cut(s) 340, 779
NspI RCATGY 1 cut(s) 199
NspV TTCGAA 2 cut(s) 155, 748
PaeR7I CTCGAG 1 cut(s) 269
PciI ACATGT 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PctI GAATGC 2 cut(s) 888, 1032
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 3 cut(s) 152, 260, 715
PflFI GACNNNGTC 1 cut(s) 789
PfoI TCCNGGA 1 cut(s) 1084
PkrI GCNGC 7 cut(s) 15, 373, 523, 544, 628, 814, 1135
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
PscI ACATGT 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 276
PspN4I GGNNCC 4 cut(s) 219, 294, 1083, 1227
PspPI GGNCC 2 cut(s) 805, 1262
PsrI GAACNNNNNNTAC 2 cut(s) 690, 722
PstI CTGCAG 1 cut(s) 1075
PsuI RGATCY 1 cut(s) 634
PsyI GACNNNGTC 1 cut(s) 789
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 3 cut(s) 476, 684, 708
RsaNI GTAC 3 cut(s) 475, 683, 707
RseI CAYNNNNRTG 1 cut(s) 503
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 3 cut(s) 687, 1112, 1140
SatI GCNGC 7 cut(s) 14, 372, 522, 543, 627, 813, 1134
Sau3AI GATC 6 cut(s) 55, 73, 265, 552, 634, 1144
Sau96I GGNCC 2 cut(s) 805, 1262
SchI GAGTC 1 cut(s) 557
SduI GDGCHC 3 cut(s) 276, 1060, 1084
SfaNI GCATC 8 cut(s) 338, 349, 439, 523, 656, 897, 987, 1213
SfcI CTRYAG 1 cut(s) 1071
Sfr274I CTCGAG 1 cut(s) 269
SfuI TTCGAA 2 cut(s) 155, 748
SinI GGWCC 1 cut(s) 1262
SlaI CTCGAG 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 3 cut(s) 269, 548, 686
SmoI CTYRAG 3 cut(s) 269, 548, 686
Sse9I AATT 4 cut(s) 444, 613, 672, 1253
SsiI CCGC 3 cut(s) 94, 371, 522
SspI AATATT 1 cut(s) 1110
SspMI CTAG 4 cut(s) 138, 656, 852, 1196
SstI GAGCTC 1 cut(s) 276
StyI CCWWGG 2 cut(s) 375, 1218
TaaI ACNGT 3 cut(s) 124, 356, 728
TaiI ACGT 1 cut(s) 793
TaqI TCGA 8 cut(s) 39, 105, 155, 258, 270, 276, 336, 748
TaqII GACCGA 1 cut(s) 322
TasI AATT 4 cut(s) 444, 613, 672, 1253
TatI WGTACW 2 cut(s) 474, 706
TauI GCSGC 2 cut(s) 374, 524
TfiI GAWTC 3 cut(s) 152, 260, 715
Tru1I TTAA 3 cut(s) 687, 1112, 1140
Tru9I TTAA 3 cut(s) 687, 1112, 1140
TscAI CASTG 3 cut(s) 50, 349, 496
TseFI GTSAC 2 cut(s) 340, 779
TseI GCWGC 5 cut(s) 13, 542, 626, 812, 1133
Tsp45I GTSAC 2 cut(s) 340, 779
TspDTI ATGAA 3 cut(s) 215, 521, 1193
TspGWI ACGGA 2 cut(s) 52, 518
TspRI CASTG 3 cut(s) 50, 349, 496
Tth111I GACNNNGTC 1 cut(s) 789
Vha464I CTTAAG 1 cut(s) 686
VneI GTGCAC 1 cut(s) 1056
VpaK11BI GGWCC 1 cut(s) 1262
XapI RAATTY 1 cut(s) 1253
XceI RCATGY 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 495
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 4 cut(s) 138, 656, 852, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.