Rh7AG194800

Heat shock chaperonin-binding motif.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013195
Physical Location & Seq
Reverse (-)
17470161 .. 17476125
5965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG194800.1

Sequence Viewer

Length: 1224 bp
ATGGAGGAAGCGAAGCTGAAGCAATTGAAGCATTTCGTCGAGCAGTGCAAGTCCGATCCCTCCATTCTCGCCGATCCTTCGCTCTCCTTCTTCCGCGATTACCTTGAGAGTCTCGGTGCTACTGTGCCTTCATCTGCTGGCAAGAATGAGGATTCGAAACCGAGGAGCTATGTAGTGGAGGAGAGCGACGACGACATGTCGGAGGAGGCTGAGCCGGAGCAGGTTCATGTTCAGGAAGAAGAGGAAGAAGAGATAGTCGAATCTGATCTCGAGCTTGAAGGTGACATTGTGGAGCCTGACAATGAACCTCCTCAGAAGATGGGAGACGCATCTGTTGAGGTCACTGAAGAGAACCGTGATGCCTCGCAGGCGGCCAAGGGCAAAGCTATTGAGGCCATTTCAGAAGGTAACTTGGAGGAAGCCATTGAGCATCTCACTGAGGCAATTTTGCTCAATCCTACTTCGGCAATTATGTACGGCACCAGAGCCAGTGTGTACATCAAAATGAAAAAACCTAATGCTGCCATTCGTGATGCCAACGCTGCTTTGGAGATTAATCCCGACTCTGCTAAAGGCTACAAGTCTCGTGGCATAGCTCATTCAATGCTTGGTAATTGGGAAGAGGCTGCAAAGGACCTCCACTTGGCATCAAAGCTAGATTTTGATGAGGAAATAAGTGCCGTACTTAAGAAGGTTGAACCTAATGTACACAAGATCCAGGAACACCGTCGTAAGTATGATAGGCTTCGTAAGGAAAGAGAGGACAGAAAGATTGAGCGTGAGAGACAACGTCGCAAAGCTGAGGCGCAGGCTGCGTATGAGAAGGCTAAGAAGCAAGAGCAGTCGTCTTCTAGCAGAAGACCTGGAGGCTTTCCTGGTGGAATGCCTGGAGGTTTTCCAGGGGCAGGAGGGATGCCAGGTGGCTTTCCTGGGGCAGGAGGGATGCCAGGTGGTTTTCCAGGCGCAGGAGGGATGCCAGGTGGTTTTCCAGGTGCAGGAGGAATGCCAGGTGGCTTTCCAGGCGCAGGAGGTGCGCCTGGAGGCTCTGCAGGAGGGGTTCCTGGAAATGTTGACTTCAGCAAAATATTAAATGACCCAGAACTGATGGCTGCATTTAGTGATCCTGAAGTTATGGCTGCTCTTCAAGATGGTACCTTTTGTTCTCATACTTATATTTCTCAAATTGGCCTTGTCTCCCTCCTTTACCTCTCAGATTTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_8

Protein Analysis

407

Amino Acids

43.63

Weight (kDa)

4.79

Isoelectric Point (pI)

61.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HipN PF18253 3 - 43 1.9e-19 Hsp70-interacting protein N N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22670
fragaria_vesca FvH4_5g00470 FvH4_5g00470
malus_domestica MD04G1080700.v1.1
prunus_persica Prupe.5G077400_v2.0.a1
pyrus_communis pycom04g07300
rosa_chinensis RchiOBHm_Chr7g0202041
rosa_laevigata RLG00000003631
rosa_multiflora Rmu_sc0006592.1_g000004
rosa_roxburghii Rroxscaffold_3G00254910
rosa_rugosa Rorug07G0067500 Rorug07G0067600 Rorug07G0067700
rosa_samantha Rh7AG194800 Rh7BG196300 Rh7CG206100 Rh7DG201500
rosa_wichuraiana Rw7G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 211
Acc65I GGTACC 1 cut(s) 1151
AccB1I GGYRCC 2 cut(s) 479, 1151
AccII CGCG 1 cut(s) 96
AciI CCGC 2 cut(s) 94, 371
AclWI GGATC 4 cut(s) 50, 68, 709, 1115
AcoI YGGCCR 1 cut(s) 372
AcuI CTGAAG 4 cut(s) 38, 366, 1060, 1146
AfaI GTAC 5 cut(s) 476, 497, 684, 708, 1153
AfiI CCNNNNNNNGG 6 cut(s) 643, 905, 935, 965, 995, 1025
AflII CTTAAG 1 cut(s) 686
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 5 cut(s) 28, 278, 603, 698, 1145
AhdI GACNNNNNGTC 1 cut(s) 196
AluBI AGCT 7 cut(s) 16, 168, 274, 386, 596, 655, 800
AluI AGCT 7 cut(s) 16, 168, 274, 386, 596, 655, 800
Alw26I GTCTC 5 cut(s) 116, 318, 588, 778, 1198
AlwI GGATC 4 cut(s) 50, 68, 709, 1115
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 3 cut(s) 372, 393, 1186
ApeKI GCWGC 6 cut(s) 521, 542, 626, 812, 1109, 1136
AseI ATTAAT 1 cut(s) 555
Asp700I GAANNNNTTC 1 cut(s) 32
Asp718I GGTACC 1 cut(s) 1151
AspLEI GCGC 4 cut(s) 808, 965, 1025, 1036
AspS9I GGNCC 1 cut(s) 634
AsuHPI GGTGA 1 cut(s) 293
AsuII TTCGAA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 634
BanI GGYRCC 2 cut(s) 479, 1151
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 2 cut(s) 840, 865
BbvCI CCTCAGC 1 cut(s) 801
BbvI GCAGC 6 cut(s) 508, 529, 613, 799, 1096, 1123
BccI CCATC 3 cut(s) 313, 1099, 1142
BceAI ACGGC 2 cut(s) 493, 665
BcoDI GTCTC 5 cut(s) 116, 318, 588, 778, 1198
BfaI CTAG 2 cut(s) 656, 852
BfmI CTRYAG 1 cut(s) 1047
BfrI CTTAAG 1 cut(s) 686
BfuAI ACCTGC 1 cut(s) 211
BglI GCCNNNNNGGC 1 cut(s) 368
BisI GCNGC 7 cut(s) 372, 522, 543, 627, 813, 1110, 1137
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 7 cut(s) 373, 523, 544, 628, 814, 1111, 1138
Bme18I GGWCC 1 cut(s) 634
BmeRI GACNNNNNGTC 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 634
BmiI GGNNCC 4 cut(s) 294, 481, 1059, 1153
BmsI GCATC 8 cut(s) 338, 349, 439, 523, 656, 903, 933, 963
BpiI GAAGAC 2 cut(s) 840, 865
BpmI CTGGAG 3 cut(s) 885, 909, 1059
Bpu10I CCTNAGC 1 cut(s) 801
Bpu1102I GCTNAGC 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 125
BsaJI CCNNGG 4 cut(s) 161, 375, 899, 929
Bsc4I CCNNNNNNNGG 6 cut(s) 643, 905, 935, 965, 995, 1025
Bse1I ACTGG 1 cut(s) 489
BseDI CCNNGG 4 cut(s) 161, 375, 899, 929
BseGI GGATG 3 cut(s) 918, 948, 978
BseLI CCNNNNNNNGG 6 cut(s) 643, 905, 935, 965, 995, 1025
BseMII CTCAG 5 cut(s) 201, 326, 429, 792, 1224
BseNI ACTGG 1 cut(s) 489
BseRI GAGGAG 4 cut(s) 178, 194, 218, 300
BseXI GCAGC 6 cut(s) 508, 529, 613, 799, 1096, 1123
BsgI GTGCAG 1 cut(s) 1014
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 3 cut(s) 374, 395, 1188
BshNI GGYRCC 2 cut(s) 479, 1151
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 6 cut(s) 643, 905, 935, 965, 995, 1025
BsmAI GTCTC 5 cut(s) 116, 318, 588, 778, 1198
BsmBI CGTCTC 1 cut(s) 318
BsmI GAATGC 2 cut(s) 888, 1008
BsnI GGCC 3 cut(s) 374, 395, 1188
BsoBI CYCGRG 1 cut(s) 269
Bsp119I TTCGAA 1 cut(s) 155
Bsp1407I TGTACA 2 cut(s) 495, 706
Bsp143I GATC 5 cut(s) 55, 73, 265, 714, 1120
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 2 cut(s) 94, 371
BspANI GGCC 3 cut(s) 374, 395, 1188
BspCNI CTCAG 5 cut(s) 202, 325, 430, 793, 1223
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 4 cut(s) 294, 481, 1059, 1153
BspMAI CTGCAG 1 cut(s) 1051
BspMI ACCTGC 1 cut(s) 211
BspPI GGATC 4 cut(s) 50, 68, 709, 1115
BspQI GCTCTTC 1 cut(s) 1146
BspT104I TTCGAA 1 cut(s) 155
BspT107I GGYRCC 2 cut(s) 479, 1151
BspTI CTTAAG 1 cut(s) 686
BsrGI TGTACA 2 cut(s) 495, 706
BsrI ACTGG 1 cut(s) 489
BssECI CCNNGG 4 cut(s) 161, 375, 899, 929
BssMI GATC 5 cut(s) 55, 73, 265, 714, 1120
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 1 cut(s) 375
Bst2BI CACGAG 1 cut(s) 585
Bst4CI ACNGT 3 cut(s) 124, 356, 728
Bst6I CTCTTC 5 cut(s) 234, 243, 342, 615, 1146
BstAFI CTTAAG 1 cut(s) 686
BstAPI GCANNNNNTGC 1 cut(s) 1031
BstAUI TGTACA 2 cut(s) 495, 706
BstBI TTCGAA 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 139, 369, 810
BstDEI CTNAG 6 cut(s) 210, 312, 438, 801, 828, 1210
BstENI CCTNNNNNAGG 1 cut(s) 933
BstF5I GGATG 3 cut(s) 918, 948, 978
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 4 cut(s) 808, 965, 1025, 1036
BstKTI GATC 5 cut(s) 58, 76, 268, 717, 1123
BstMAI GTCTC 5 cut(s) 116, 318, 588, 778, 1198
BstMBI GATC 5 cut(s) 55, 73, 265, 714, 1120
BstMWI GCNNNNNNNGC 7 cut(s) 28, 368, 392, 542, 812, 1020, 1031
BstNSI RCATGY 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 1047
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 6 cut(s) 508, 529, 613, 799, 1096, 1123
BstV2I GAAGAC 2 cut(s) 840, 865
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
BsuRI GGCC 3 cut(s) 374, 395, 1188
BtsCI GGATG 3 cut(s) 918, 948, 978
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 4 cut(s) 50, 342, 435, 496
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 3 cut(s) 139, 369, 810
CfoI GCGC 4 cut(s) 808, 965, 1025, 1036
Cfr13I GGNCC 1 cut(s) 634
CseI GACGC 1 cut(s) 335
Csp6I GTAC 5 cut(s) 475, 496, 683, 707, 1152
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviAII CATG 2 cut(s) 196, 227
CviQI GTAC 5 cut(s) 475, 496, 683, 707, 1152
DdeI CTNAG 6 cut(s) 210, 312, 438, 801, 828, 1210
DpnI GATC 5 cut(s) 57, 75, 267, 716, 1122
DpnII GATC 5 cut(s) 55, 73, 265, 714, 1120
DriI GACNNNNNGTC 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 5 cut(s) 234, 243, 342, 615, 1146
Eam1105I GACNNNNNGTC 1 cut(s) 196
EarI CTCTTC 5 cut(s) 234, 243, 342, 615, 1146
Eco130I CCWWGG 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 634
Eco57I CTGAAG 4 cut(s) 38, 366, 1060, 1146
Eco88I CYCGRG 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 933
EcoO109I RGGNCCY 1 cut(s) 634
EcoT14I CCWWGG 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 375
Esp3I CGTCTC 1 cut(s) 318
FaeI CATG 2 cut(s) 199, 230
FatI CATG 2 cut(s) 195, 226
Fnu4HI GCNGC 7 cut(s) 372, 522, 543, 627, 813, 1110, 1137
FokI GGATG 3 cut(s) 925, 955, 985
Fsp4HI GCNGC 7 cut(s) 372, 522, 543, 627, 813, 1110, 1137
FspBI CTAG 2 cut(s) 656, 852
GlaI GCGC 4 cut(s) 807, 964, 1024, 1035
GluI GCNGC 7 cut(s) 372, 522, 543, 627, 813, 1110, 1137
GsuI CTGGAG 3 cut(s) 885, 909, 1059
HaeIII GGCC 3 cut(s) 374, 395, 1188
HapII CCGG 1 cut(s) 215
HgaI GACGC 1 cut(s) 335
HhaI GCGC 4 cut(s) 808, 965, 1025, 1036
Hin1II CATG 2 cut(s) 199, 230
Hin6I GCGC 4 cut(s) 806, 963, 1023, 1034
HinP1I GCGC 4 cut(s) 806, 963, 1023, 1034
HincII GTYRAC 1 cut(s) 1072
HindII GTYRAC 1 cut(s) 1072
HinfI GANTC 4 cut(s) 109, 152, 260, 563
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 3 cut(s) 496, 709, 1072
Hpy188I TCNGA 6 cut(s) 55, 202, 265, 315, 403, 1213
Hpy188III TCNNGA 6 cut(s) 233, 269, 530, 560, 1124, 1145
Hpy8I GTNNAC 3 cut(s) 496, 709, 1072
Hpy99I CGWCG 5 cut(s) 41, 191, 194, 732, 795
HpyAV CCTTC 7 cut(s) 87, 97, 138, 272, 398, 685, 817
HpyCH4III ACNGT 3 cut(s) 124, 356, 728
HpyCH4IV ACGT 1 cut(s) 790
HpyCH4V TGCA 5 cut(s) 48, 629, 995, 1049, 1112
HpyF10VI GCNNNNNNNGC 7 cut(s) 28, 368, 392, 542, 812, 1020, 1031
HpyF3I CTNAG 6 cut(s) 210, 312, 438, 801, 828, 1210
HpySE526I ACGT 1 cut(s) 790
Hsp92II CATG 2 cut(s) 199, 230
HspAI GCGC 4 cut(s) 806, 963, 1023, 1034
KpnI GGTACC 1 cut(s) 1155
Kzo9I GATC 5 cut(s) 55, 73, 265, 714, 1120
LguI GCTCTTC 1 cut(s) 1146
LmnI GCTCC 3 cut(s) 165, 217, 292
Lsp1109I GCAGC 6 cut(s) 508, 529, 613, 799, 1096, 1123
LweI GCATC 8 cut(s) 338, 349, 439, 523, 656, 903, 933, 963
MaeI CTAG 2 cut(s) 656, 852
MaeII ACGT 1 cut(s) 790
MaeIII GTNAC 3 cut(s) 281, 340, 407
MalI GATC 5 cut(s) 57, 75, 267, 716, 1122
MboI GATC 5 cut(s) 55, 73, 265, 714, 1120
MfeI CAATTG 1 cut(s) 23
MflI RGATCY 1 cut(s) 714
MluCI AATT 5 cut(s) 23, 444, 468, 613, 1182
MlyI GAGTC 2 cut(s) 118, 557
MmeI TCCRAC 1 cut(s) 180
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 3 cut(s) 555, 687, 1088
MslI CAYNNNNRTG 1 cut(s) 503
MspCI CTTAAG 1 cut(s) 686
MspI CCGG 1 cut(s) 215
MunI CAATTG 1 cut(s) 23
Mva1269I GAATGC 2 cut(s) 888, 1008
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 7 cut(s) 28, 368, 392, 542, 812, 1020, 1031
NdeII GATC 5 cut(s) 55, 73, 265, 714, 1120
NlaIII CATG 2 cut(s) 199, 230
NlaIV GGNNCC 4 cut(s) 294, 481, 1059, 1153
NmuCI GTSAC 2 cut(s) 281, 340
NspI RCATGY 1 cut(s) 199
NspV TTCGAA 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 269
PciI ACATGT 1 cut(s) 195
PciSI GCTCTTC 1 cut(s) 1146
PctI GAATGC 2 cut(s) 888, 1008
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 2 cut(s) 152, 260
PflFI GACNNNGTC 1 cut(s) 789
PfoI TCCNGGA 2 cut(s) 717, 1060
PkrI GCNGC 7 cut(s) 373, 523, 544, 628, 814, 1111, 1138
PleI GAGTC 2 cut(s) 117, 557
PpsI GAGTC 2 cut(s) 117, 557
PpuMI RGGWCCY 1 cut(s) 634
PscI ACATGT 1 cut(s) 195
PshBI ATTAAT 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 634
PspN4I GGNNCC 4 cut(s) 294, 481, 1059, 1153
PspPI GGNCC 1 cut(s) 634
PspPPI RGGWCCY 1 cut(s) 634
PsrI GAACNNNNNNTAC 4 cut(s) 690, 722, 1144, 1176
PstI CTGCAG 1 cut(s) 1051
PsuI RGATCY 1 cut(s) 714
PsyI GACNNNGTC 1 cut(s) 789
RsaI GTAC 5 cut(s) 476, 497, 684, 708, 1153
RsaNI GTAC 5 cut(s) 475, 496, 683, 707, 1152
RseI CAYNNNNRTG 1 cut(s) 503
SapI GCTCTTC 1 cut(s) 1146
SaqAI TTAA 3 cut(s) 555, 687, 1088
SatI GCNGC 7 cut(s) 372, 522, 543, 627, 813, 1110, 1137
Sau3AI GATC 5 cut(s) 55, 73, 265, 714, 1120
Sau96I GGNCC 1 cut(s) 634
SchI GAGTC 2 cut(s) 118, 557
SfaNI GCATC 8 cut(s) 338, 349, 439, 523, 656, 903, 933, 963
SfcI CTRYAG 1 cut(s) 1047
Sfr274I CTCGAG 1 cut(s) 269
SfuI TTCGAA 1 cut(s) 155
SinI GGWCC 1 cut(s) 634
SlaI CTCGAG 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 3 cut(s) 104, 269, 686
SmoI CTYRAG 3 cut(s) 104, 269, 686
Sse9I AATT 5 cut(s) 23, 444, 468, 613, 1182
SsiI CCGC 2 cut(s) 94, 371
SspI AATATT 1 cut(s) 1086
SspMI CTAG 2 cut(s) 656, 852
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 3 cut(s) 124, 356, 728
TaiI ACGT 1 cut(s) 793
TaqI TCGA 4 cut(s) 39, 155, 258, 270
TasI AATT 5 cut(s) 23, 444, 468, 613, 1182
TatI WGTACW 2 cut(s) 495, 706
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 2 cut(s) 152, 260
Tru1I TTAA 3 cut(s) 555, 687, 1088
Tru9I TTAA 3 cut(s) 555, 687, 1088
TscAI CASTG 4 cut(s) 50, 349, 442, 496
TseFI GTSAC 2 cut(s) 281, 340
TseI GCWGC 6 cut(s) 521, 542, 626, 812, 1109, 1136
Tsp45I GTSAC 2 cut(s) 281, 340
TspDTI ATGAA 4 cut(s) 120, 215, 318, 521
TspRI CASTG 4 cut(s) 50, 349, 442, 496
Tth111I GACNNNGTC 1 cut(s) 789
Vha464I CTTAAG 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 634
VspI ATTAAT 1 cut(s) 555
XagI CCTNNNNNAGG 1 cut(s) 933
XceI RCATGY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 2 cut(s) 656, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.