Rorug07G0067600

Heat shock chaperonin-binding motif.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013195
Physical Location & Seq
Forward (+)
5126565 .. 5127522
958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0067600.1

Sequence Viewer

Length: 489 bp
ATGGAAGTTGCAAAGGCTGAAACACCAACACCATCGACGTTCTTCGAAGCTGCCACTAAAAAGAGAAAAGCGACGGAAGAACTGGACGCCGATCATGATGCAAGGCTGCGATGGAAATTTGCTAAGGAGCTGAGGCTCTGTGACGCTTGGTACATGAAAAGGCTCAACGGCAGTGATGTTAGCAAAAGCCGGAAAAATCTGGCGGTGAGCAAGAGCTGGGTGGTTGAGCAGGTCTTGCCTTTCTTCGCCGCTAGCGCTGCCGCGAGAGTCGAGCGTGGTGAGAGTGAGAGAGTTATTGTTCACGACTGTGAGCAAGACTCACTCCATGTGTTGTATTTGAAGAAGCTGAAAACGGGGAGGTTCGTCTTTGTTGGGAGGTGGAAAGATGACTTTGTGATTAGGAGAAATTTGAAGAAGGGCGATGAAATTGGTCTGTGTTGGCACGGAGACAAATCCATGTTCAGTTTTACTGCTTTTTATCGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_8

Protein Analysis

162

Amino Acids

18.8

Weight (kDa)

9.49

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22670
fragaria_vesca FvH4_5g00470 FvH4_5g00470
malus_domestica MD04G1080700.v1.1
prunus_persica Prupe.5G077400_v2.0.a1
pyrus_communis pycom04g07300
rosa_chinensis RchiOBHm_Chr7g0202041
rosa_laevigata RLG00000003631
rosa_multiflora Rmu_sc0006592.1_g000004
rosa_roxburghii Rroxscaffold_3G00254910
rosa_rugosa Rorug07G0067500 Rorug07G0067600 Rorug07G0067700
rosa_samantha Rh7AG194800 Rh7BG196300 Rh7CG206100 Rh7DG201500
rosa_wichuraiana Rw7G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 220
AccII CGCG 1 cut(s) 263
AciI CCGC 3 cut(s) 203, 249, 261
AcsI RAATTY 2 cut(s) 116, 406
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 152
AfeI AGCGCT 1 cut(s) 256
AgsI TTSAA 2 cut(s) 340, 412
AleI CACNNNNGTG 1 cut(s) 306
AluBI AGCT 4 cut(s) 50, 130, 216, 346
AluI AGCT 4 cut(s) 50, 130, 216, 346
Alw26I GTCTC 1 cut(s) 441
Aor51HI AGCGCT 1 cut(s) 256
ApeKI GCWGC 3 cut(s) 50, 106, 257
ApoI RAATTY 2 cut(s) 116, 406
AspLEI GCGC 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 217, 290
AsuII TTCGAA 1 cut(s) 45
AsuNHI GCTAGC 1 cut(s) 251
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 3 cut(s) 37, 93, 244
BccI CCATC 2 cut(s) 40, 105
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 2 cut(s) 252, 487
BfoI RGCGCY 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 220
BisI GCNGC 5 cut(s) 51, 107, 249, 258, 261
BlsI GCNGC 5 cut(s) 52, 108, 250, 259, 262
BmsI GCATC 1 cut(s) 88
BmtI GCTAGC 1 cut(s) 255
BplI GAGNNNNNCTC 2 cut(s) 302, 334
Bpu10I CCTNAGC 2 cut(s) 123, 131
Bpu14I TTCGAA 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 87
BseXI GCAGC 3 cut(s) 37, 93, 244
BseYI CCCAGC 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 263
BsiSI CCGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 441
Bsp119I TTCGAA 1 cut(s) 45
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 3 cut(s) 203, 249, 261
BspCNI CTCAG 1 cut(s) 123
BspFNI CGCG 1 cut(s) 263
BspHI TCATGA 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 220
BspOI GCTAGC 1 cut(s) 255
BspT104I TTCGAA 1 cut(s) 45
BsrI ACTGG 1 cut(s) 87
BssMI GATC 1 cut(s) 91
BssNI GRCGYC 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 308
BstACI GRCGYC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 235
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 2 cut(s) 123, 131
BstFNI CGCG 1 cut(s) 263
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 3 cut(s) 235, 254, 257
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 3 cut(s) 37, 93, 244
BtgZI GCGATG 2 cut(s) 124, 435
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 178
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 253
CciI TCATGA 1 cut(s) 94
CfoI GCGC 1 cut(s) 257
CseI GACGC 2 cut(s) 95, 152
Csp6I GTAC 1 cut(s) 151
CviAII CATG 4 cut(s) 95, 154, 326, 457
CviJI RGCY 9 cut(s) 17, 50, 106, 130, 136, 163, 189, 216, 346
CviKI_1 RGCY 9 cut(s) 17, 50, 106, 130, 136, 163, 189, 216, 346
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 2 cut(s) 123, 131
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eco47III AGCGCT 1 cut(s) 256
FaeI CATG 4 cut(s) 98, 157, 329, 460
FaiI YATR 4 cut(s) 96, 155, 327, 458
FatI CATG 4 cut(s) 94, 153, 325, 456
Fnu4HI GCNGC 5 cut(s) 51, 107, 249, 258, 261
Fsp4HI GCNGC 5 cut(s) 51, 107, 249, 258, 261
FspBI CTAG 2 cut(s) 252, 487
GlaI GCGC 1 cut(s) 256
GluI GCNGC 5 cut(s) 51, 107, 249, 258, 261
GsaI CCCAGC 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 258
HapII CCGG 1 cut(s) 190
HgaI GACGC 2 cut(s) 95, 152
HhaI GCGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 4 cut(s) 98, 157, 329, 460
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HinfI GANTC 2 cut(s) 267, 317
HpaII CCGG 1 cut(s) 190
HphI GGTGA 2 cut(s) 217, 290
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 483
Hpy188III TCNNGA 2 cut(s) 95, 302
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 2 cut(s) 40, 76
HpyAV CCTTC 1 cut(s) 409
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 11, 101
HpyF10VI GCNNNNNNNGC 3 cut(s) 235, 254, 257
HpyF3I CTNAG 2 cut(s) 123, 131
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 4 cut(s) 98, 157, 329, 460
HspAI GCGC 1 cut(s) 255
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 5 cut(s) 68, 185, 202, 203, 215
Lsp1109I GCAGC 3 cut(s) 37, 93, 244
LweI GCATC 1 cut(s) 88
MaeI CTAG 2 cut(s) 252, 487
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 140
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 5 cut(s) 34, 89, 235, 352, 424
MluCI AATT 3 cut(s) 116, 406, 426
MlyI GAGTC 2 cut(s) 276, 311
MnlI CCTC 3 cut(s) 126, 351, 369
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 1 cut(s) 190
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 3 cut(s) 235, 254, 257
NdeII GATC 1 cut(s) 91
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 4 cut(s) 98, 157, 329, 460
NmuCI GTSAC 1 cut(s) 140
NspV TTCGAA 1 cut(s) 45
OliI CACNNNNGTG 1 cut(s) 306
PagI TCATGA 1 cut(s) 94
PkrI GCNGC 5 cut(s) 52, 108, 250, 259, 262
PleI GAGTC 2 cut(s) 275, 311
PpsI GAGTC 2 cut(s) 275, 311
PspFI CCCAGC 1 cut(s) 216
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 306
SatI GCNGC 5 cut(s) 51, 107, 249, 258, 261
Sau3AI GATC 1 cut(s) 91
SchI GAGTC 2 cut(s) 276, 311
SetI ASST 8 cut(s) 41, 52, 132, 218, 234, 348, 362, 380
SfaNI GCATC 1 cut(s) 88
SfuI TTCGAA 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 3 cut(s) 116, 406, 426
SsiI CCGC 3 cut(s) 203, 249, 261
SspMI CTAG 2 cut(s) 252, 487
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 1 cut(s) 41
TaqI TCGA 3 cut(s) 35, 45, 270
TasI AATT 3 cut(s) 116, 406, 426
TauI GCSGC 2 cut(s) 251, 263
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 3 cut(s) 50, 106, 257
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 2 cut(s) 170, 438
TspGWI ACGGA 2 cut(s) 89, 459
TspRI CASTG 1 cut(s) 178
XapI RAATTY 2 cut(s) 116, 406
XspI CTAG 2 cut(s) 252, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.