Rorug07G0067500

Heat shock chaperonin-binding motif.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013195
Physical Location & Seq
Reverse (-)
5124345 .. 5126304
1960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0067500.1

Sequence Viewer

Length: 414 bp
ATGACCCAAACCAGATGTAGTAGCTACAGCTGCAACAAGATCACAAGTCACAACAGAAGCGAAGAGAGAGAGAGAGAGAGAATGGGAAGGAAGAAGGGAGTGGCGGACTTCGACGAGTCGCCGCCGGATGACTTCGATCCGGCGAATCCGTACAAGGACCCGGTGGCGATGCTGGAGATGAGGGAGCACATCGTCCGAGAGAAGTGGATCCAAATAGAGAAGGCCAAGATTCTCCGGGACAAGCTCCGCTGGTGCTACCGCGTCGAAGGCATAAACCACCTCCAGAAGTGCCGCCTCCTCCGCGACCAGTACCTCGAGTCCACGCGCGGCATCGGTTGGGGCAAGGACCACCGCCCCTACGAGTTCCATGGCCCCAAGCTGGAGGTGAAGGCGGAGGCGGAGGAGTCGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_8

Protein Analysis

137

Amino Acids

16.34

Weight (kDa)

7.7

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22670
fragaria_vesca FvH4_5g00470 FvH4_5g00470
malus_domestica MD04G1080700.v1.1
prunus_persica Prupe.5G077400_v2.0.a1
pyrus_communis pycom04g07300
rosa_chinensis RchiOBHm_Chr7g0202041
rosa_laevigata RLG00000003631
rosa_multiflora Rmu_sc0006592.1_g000004
rosa_roxburghii Rroxscaffold_3G00254910
rosa_rugosa Rorug07G0067500 Rorug07G0067600 Rorug07G0067700
rosa_samantha Rh7AG194800 Rh7BG196300 Rh7CG206100 Rh7DG201500
rosa_wichuraiana Rw7G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 261, 303, 325, 327
AclWI GGATC 3 cut(s) 131, 202, 215
AfaI GTAC 2 cut(s) 152, 311
AfiI CCNNNNNNNGG 1 cut(s) 379
AluBI AGCT 4 cut(s) 24, 30, 244, 379
AluI AGCT 4 cut(s) 24, 30, 244, 379
Alw21I GWGCWC 1 cut(s) 189
AlwI GGATC 3 cut(s) 131, 202, 215
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 2 cut(s) 222, 370
ApeKI GCWGC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 3 cut(s) 157, 346, 371
AsuC2I CCSGG 2 cut(s) 161, 236
AsuHPI GGTGA 1 cut(s) 397
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 2 cut(s) 157, 346
BamHI GGATCC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 17
BcnI CCSGG 2 cut(s) 161, 236
BfmI CTRYAG 1 cut(s) 25
BisI GCNGC 4 cut(s) 31, 122, 292, 328
BlsI GCNGC 4 cut(s) 32, 123, 293, 329
Bme1390I CCNGG 2 cut(s) 161, 236
Bme18I GGWCC 2 cut(s) 157, 346
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 3 cut(s) 157, 346, 371
BmiI GGNNCC 3 cut(s) 159, 209, 373
BmrFI CCNGG 2 cut(s) 161, 236
BmsI GCATC 2 cut(s) 159, 339
BpmI CTGGAG 3 cut(s) 194, 266, 401
BpuMI CCSGG 2 cut(s) 161, 236
BsaJI CCNNGG 1 cut(s) 367
BsaXI ACNNNNNCTCC 1 cut(s) 395
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 379
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 4 cut(s) 261, 303, 325, 327
BshFI GGCC 2 cut(s) 224, 372
BsiHKAI GWGCWC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 4 cut(s) 125, 140, 161, 235
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 2 cut(s) 224, 372
BsoBI CYCGRG 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 3 cut(s) 39, 136, 207
Bsp19I CCATGG 1 cut(s) 367
BspANI GGCC 2 cut(s) 224, 372
BspFNI CGCG 4 cut(s) 261, 303, 325, 327
BspLI GGNNCC 3 cut(s) 159, 209, 373
BspPI GGATC 3 cut(s) 131, 202, 215
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 3 cut(s) 39, 136, 207
BssT1I CCWWGG 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 367
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 4 cut(s) 261, 303, 325, 327
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 3 cut(s) 42, 139, 210
BstMBI GATC 3 cut(s) 39, 136, 207
BstMWI GCNNNNNNNGC 3 cut(s) 30, 267, 300
BstSCI CCNGG 2 cut(s) 159, 234
BstSFI CTRYAG 1 cut(s) 25
BstUI CGCG 4 cut(s) 261, 303, 325, 327
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
BsuRI GGCC 2 cut(s) 224, 372
BtgI CCRYGG 1 cut(s) 367
BtgZI GCGATG 1 cut(s) 182
BtsCI GGATG 1 cut(s) 133
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 3 cut(s) 157, 346, 371
CseI GACGC 1 cut(s) 250
Csp6I GTAC 2 cut(s) 151, 310
CviAII CATG 1 cut(s) 368
CviJI RGCY 6 cut(s) 24, 30, 224, 244, 372, 379
CviKI_1 RGCY 6 cut(s) 24, 30, 224, 244, 372, 379
CviQI GTAC 2 cut(s) 151, 310
DpnI GATC 3 cut(s) 41, 138, 209
DpnII GATC 3 cut(s) 39, 136, 207
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 3 cut(s) 119, 407, 413
Eco130I CCWWGG 1 cut(s) 367
Eco47I GGWCC 2 cut(s) 157, 346
Eco88I CYCGRG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 1 cut(s) 371
FaiI YATR 2 cut(s) 272, 369
FaqI GGGAC 1 cut(s) 251
FatI CATG 1 cut(s) 367
Fnu4HI GCNGC 4 cut(s) 31, 122, 292, 328
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 4 cut(s) 31, 122, 292, 328
GlaI GCGC 1 cut(s) 326
GluI GCNGC 4 cut(s) 31, 122, 292, 328
GsuI CTGGAG 3 cut(s) 194, 266, 401
HaeIII GGCC 2 cut(s) 224, 372
HapII CCGG 4 cut(s) 125, 140, 161, 235
HgaI GACGC 1 cut(s) 250
HhaI GCGC 1 cut(s) 327
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HinfI GANTC 5 cut(s) 116, 145, 229, 317, 404
HpaII CCGG 4 cut(s) 125, 140, 161, 235
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 2 cut(s) 197, 409
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 2 cut(s) 116, 266
HpyAV CCTTC 5 cut(s) 81, 88, 214, 260, 382
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 267, 300
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 1 cut(s) 325
Kzo9I GATC 3 cut(s) 39, 136, 207
LmnI GCTCC 2 cut(s) 184, 249
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 159, 339
MaeIII GTNAC 1 cut(s) 47
MalI GATC 3 cut(s) 41, 138, 209
MboI GATC 3 cut(s) 39, 136, 207
MboII GAAGA 2 cut(s) 74, 103
MflI RGATCY 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 189
MlyI GAGTC 3 cut(s) 125, 326, 413
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 8 cut(s) 174, 290, 305, 308, 323, 376, 388, 394
MspA1I CMGCKG 2 cut(s) 30, 249
MspI CCGG 4 cut(s) 125, 140, 161, 235
MspR9I CCNGG 2 cut(s) 161, 236
MvnI CGCG 4 cut(s) 261, 303, 325, 327
MwoI GCNNNNNNNGC 3 cut(s) 30, 267, 300
NciI CCSGG 2 cut(s) 161, 236
NcoI CCATGG 1 cut(s) 367
NdeII GATC 3 cut(s) 39, 136, 207
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 3 cut(s) 159, 209, 373
NmuCI GTSAC 1 cut(s) 47
PaeR7I CTCGAG 1 cut(s) 314
PfeI GAWTC 2 cut(s) 145, 229
PfoI TCCNGGA 1 cut(s) 234
PkrI GCNGC 4 cut(s) 32, 123, 293, 329
PleI GAGTC 3 cut(s) 124, 325, 412
PpsI GAGTC 3 cut(s) 124, 325, 412
PpuMI RGGWCCY 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 157
PspN4I GGNNCC 3 cut(s) 159, 209, 373
PspPI GGNCC 3 cut(s) 157, 346, 371
PspPPI RGGWCCY 1 cut(s) 157
PspXI VCTCGAGB 1 cut(s) 314
PsuI RGATCY 1 cut(s) 207
PvuII CAGCTG 1 cut(s) 30
RsaI GTAC 2 cut(s) 152, 311
RsaNI GTAC 2 cut(s) 151, 310
SatI GCNGC 4 cut(s) 31, 122, 292, 328
Sau3AI GATC 3 cut(s) 39, 136, 207
Sau96I GGNCC 3 cut(s) 157, 346, 371
SchI GAGTC 3 cut(s) 125, 326, 413
ScrFI CCNGG 2 cut(s) 161, 236
SduI GDGCHC 1 cut(s) 189
SetI ASST 7 cut(s) 26, 32, 246, 282, 315, 381, 387
SfaNI GCATC 2 cut(s) 159, 339
SfcI CTRYAG 1 cut(s) 25
Sfr274I CTCGAG 1 cut(s) 314
SinI GGWCC 2 cut(s) 157, 346
SlaI CTCGAG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
StyD4I CCNGG 2 cut(s) 159, 234
StyI CCWWGG 1 cut(s) 367
TaqI TCGA 4 cut(s) 111, 135, 264, 315
TauI GCSGC 3 cut(s) 124, 294, 330
TfiI GAWTC 2 cut(s) 145, 229
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 138
VpaK11BI GGWCC 2 cut(s) 157, 346
XhoI CTCGAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.