Rmu_sc0006592.1_g000004

Heat shock chaperonin-binding motif.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006592.1
OG0013195
Physical Location & Seq
Reverse (-)
19664 .. 24190
4527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006592.1_g000004.1.cds

Sequence Viewer

Length: 1308 bp
atggaggaagcgaagctgaagcaattgaagcattttgtcgagcagtgcaagtccgatccctccattctcgccgatccttcgctctccttcttccgcgattaccttgagagtctcggtgctactgtgccttcatctgctggcaagaatgaggattcgaaaccgaggagctatgtagtggaggagagcgacgacgacatgtcggaggaggctgagccggagcaggttcatgttcaggaagaagaggaagaagagatagtcgaatctgatctcgagcttgaaggcgacattgtggagcctgacaatgaacctcctcagaagatgggagacgcatctgttgaggtcactgaagagaaccgtgatgcctcgcaggcggccaagggcaaagctattgaggccatttcagaaggtaacttggaggaagccattgagcatctcactgaggcaattttgctcaatcctacttcggcaattatgtacggcaccagagccagtgtgtacatcaaaatgaaaaaacctaatgctgccattcgtgatgccaatgctgctttggagattaatcccgactctgctaaaggctacaagtctcgtggcatagctcattcaatgcttggtaattgggaagaggctgcaaaggacctccacttggcatcaaagctagattttgatgaggaaataagtgccgtacttaagaaggttgaacctaatgtacacaagatccaggaacaccgtcgtaagtatgataggcttcgtaaggaaagagaggacagaaagattgagcgtgagagacaacgtcgcaaagctgaggcgcaggctgcgtatgagaaggctaagaagcaagagcagtcgtcttctagcagaagacctggaggctttcctggtggaatgcctggaggttttccaggggcaggagggatgccaggtggctttcctggggcaggagggatgccaggtggctttcctggggcaggagggatgccaggtggttttccaggcgcaggaggaatgccaggtggttttccaggcgcaggaggaatgccaggtggctttccaggcgcaggaggaatgccaggtggctttccaggcgcaggaggtgcgcctggaggctctgcaggaggggttcctggaaatgttgacttcagcaaaatattaaatgacccagaactgatgtctgcatttagtgatcctgaagttatggctgctcttcaagatgtgatgaagaaccctgctaatctagcaaagcatcaagcaaatcctaaggtggcgcctataattgccaagatgatgagcaaatttggtggaccgaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_8

Protein Analysis

435

Amino Acids

46.08

Weight (kDa)

5.04

Isoelectric Point (pI)

64.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22670
fragaria_vesca FvH4_5g00470 FvH4_5g00470
malus_domestica MD04G1080700.v1.1
prunus_persica Prupe.5G077400_v2.0.a1
pyrus_communis pycom04g07300
rosa_chinensis RchiOBHm_Chr7g0202041
rosa_laevigata RLG00000003631
rosa_multiflora Rmu_sc0006592.1_g000004
rosa_roxburghii Rroxscaffold_3G00254910
rosa_rugosa Rorug07G0067500 Rorug07G0067600 Rorug07G0067700
rosa_samantha Rh7AG194800 Rh7BG196300 Rh7CG206100 Rh7DG201500
rosa_wichuraiana Rw7G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 211
AccB1I GGYRCC 2 cut(s) 479, 1261
AccII CGCG 1 cut(s) 96
AciI CCGC 2 cut(s) 94, 371
AclWI GGATC 4 cut(s) 50, 68, 709, 1175
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 1 cut(s) 1289
AcuI CTGAAG 4 cut(s) 38, 366, 1120, 1206
AcyI GRCGYC 1 cut(s) 1262
AfaI GTAC 4 cut(s) 476, 497, 684, 708
AfiI CCNNNNNNNGG 8 cut(s) 643, 905, 935, 965, 995, 1025, 1055, 1085
AflII CTTAAG 1 cut(s) 686
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 5 cut(s) 28, 278, 603, 698, 1205
AhdI GACNNNNNGTC 1 cut(s) 196
AluBI AGCT 7 cut(s) 16, 168, 274, 386, 596, 655, 800
AluI AGCT 7 cut(s) 16, 168, 274, 386, 596, 655, 800
Alw26I GTCTC 4 cut(s) 116, 318, 588, 778
AlwI GGATC 4 cut(s) 50, 68, 709, 1175
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 2 cut(s) 372, 393
ApeKI GCWGC 5 cut(s) 521, 542, 626, 812, 1196
ApoI RAATTY 1 cut(s) 1289
AseI ATTAAT 1 cut(s) 555
AspLEI GCGC 7 cut(s) 808, 995, 1025, 1055, 1085, 1096, 1264
AspS9I GGNCC 2 cut(s) 634, 1298
AsuII TTCGAA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 2 cut(s) 634, 1298
AxyI CCTNAGG 1 cut(s) 1254
BanI GGYRCC 2 cut(s) 479, 1261
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 2 cut(s) 840, 865
BbvCI CCTCAGC 1 cut(s) 801
BbvI GCAGC 5 cut(s) 508, 529, 613, 799, 1183
BccI CCATC 1 cut(s) 313
BceAI ACGGC 2 cut(s) 493, 665
BcoDI GTCTC 4 cut(s) 116, 318, 588, 778
BfaI CTAG 3 cut(s) 656, 852, 1232
BfmI CTRYAG 1 cut(s) 1107
BfoI RGCGCY 1 cut(s) 1265
BfrI CTTAAG 1 cut(s) 686
BfuAI ACCTGC 1 cut(s) 211
BglI GCCNNNNNGGC 1 cut(s) 368
BisI GCNGC 6 cut(s) 372, 522, 543, 627, 813, 1197
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 6 cut(s) 373, 523, 544, 628, 814, 1198
Bme18I GGWCC 2 cut(s) 634, 1298
BmeRI GACNNNNNGTC 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 634, 1298
BmiI GGNNCC 4 cut(s) 294, 481, 1119, 1263
BmsI GCATC 9 cut(s) 338, 349, 439, 523, 656, 903, 933, 963, 1249
BpiI GAAGAC 2 cut(s) 840, 865
BpmI CTGGAG 3 cut(s) 885, 909, 1119
Bpu10I CCTNAGC 1 cut(s) 801
Bpu1102I GCTNAGC 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 1262
BsaJI CCNNGG 5 cut(s) 161, 375, 899, 929, 959
Bsc4I CCNNNNNNNGG 8 cut(s) 643, 905, 935, 965, 995, 1025, 1055, 1085
Bse1I ACTGG 1 cut(s) 489
Bse21I CCTNAGG 1 cut(s) 1254
BseDI CCNNGG 5 cut(s) 161, 375, 899, 929, 959
BseGI GGATG 3 cut(s) 918, 948, 978
BseLI CCNNNNNNNGG 8 cut(s) 643, 905, 935, 965, 995, 1025, 1055, 1085
BseMII CTCAG 4 cut(s) 201, 326, 429, 792
BseNI ACTGG 1 cut(s) 489
BseRI GAGGAG 4 cut(s) 178, 194, 218, 300
BseXI GCAGC 5 cut(s) 508, 529, 613, 799, 1183
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 2 cut(s) 374, 395
BshNI GGYRCC 2 cut(s) 479, 1261
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 8 cut(s) 643, 905, 935, 965, 995, 1025, 1055, 1085
BsmAI GTCTC 4 cut(s) 116, 318, 588, 778
BsmBI CGTCTC 1 cut(s) 318
BsmI GAATGC 4 cut(s) 888, 1008, 1038, 1068
BsnI GGCC 2 cut(s) 374, 395
BsoBI CYCGRG 1 cut(s) 269
Bsp119I TTCGAA 1 cut(s) 155
Bsp1407I TGTACA 2 cut(s) 495, 706
Bsp143I GATC 5 cut(s) 55, 73, 265, 714, 1180
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 2 cut(s) 94, 371
BspANI GGCC 2 cut(s) 374, 395
BspCNI CTCAG 4 cut(s) 202, 325, 430, 793
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 4 cut(s) 294, 481, 1119, 1263
BspMAI CTGCAG 1 cut(s) 1111
BspMI ACCTGC 1 cut(s) 211
BspPI GGATC 4 cut(s) 50, 68, 709, 1175
BspQI GCTCTTC 1 cut(s) 1206
BspT104I TTCGAA 1 cut(s) 155
BspT107I GGYRCC 2 cut(s) 479, 1261
BspTI CTTAAG 1 cut(s) 686
BsrGI TGTACA 2 cut(s) 495, 706
BsrI ACTGG 1 cut(s) 489
BssECI CCNNGG 5 cut(s) 161, 375, 899, 929, 959
BssMI GATC 5 cut(s) 55, 73, 265, 714, 1180
BssNI GRCGYC 1 cut(s) 1262
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 1 cut(s) 375
Bst2BI CACGAG 1 cut(s) 585
Bst4CI ACNGT 3 cut(s) 124, 356, 728
Bst6I CTCTTC 5 cut(s) 234, 243, 342, 615, 1206
BstACI GRCGYC 1 cut(s) 1262
BstAFI CTTAAG 1 cut(s) 686
BstAPI GCANNNNNTGC 1 cut(s) 1091
BstAUI TGTACA 2 cut(s) 495, 706
BstBI TTCGAA 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 139, 369, 810
BstDEI CTNAG 6 cut(s) 210, 312, 438, 801, 828, 1254
BstENI CCTNNNNNAGG 2 cut(s) 933, 963
BstF5I GGATG 3 cut(s) 918, 948, 978
BstFNI CGCG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 1265
BstHHI GCGC 7 cut(s) 808, 995, 1025, 1055, 1085, 1096, 1264
BstKTI GATC 5 cut(s) 58, 76, 268, 717, 1183
BstMAI GTCTC 4 cut(s) 116, 318, 588, 778
BstMBI GATC 5 cut(s) 55, 73, 265, 714, 1180
BstMWI GCNNNNNNNGC 9 cut(s) 28, 368, 392, 542, 812, 1050, 1080, 1091, 1232
BstNSI RCATGY 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 1107
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 5 cut(s) 508, 529, 613, 799, 1183
BstV2I GAAGAC 2 cut(s) 840, 865
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
Bsu36I CCTNAGG 1 cut(s) 1254
BsuRI GGCC 2 cut(s) 374, 395
BtsCI GGATG 3 cut(s) 918, 948, 978
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 4 cut(s) 50, 342, 435, 496
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 3 cut(s) 139, 369, 810
CfoI GCGC 7 cut(s) 808, 995, 1025, 1055, 1085, 1096, 1264
Cfr13I GGNCC 2 cut(s) 634, 1298
CseI GACGC 1 cut(s) 335
Csp6I GTAC 4 cut(s) 475, 496, 683, 707
CspCI CAANNNNNGTGG 3 cut(s) 568, 603, 1276
CviAII CATG 2 cut(s) 196, 227
CviQI GTAC 4 cut(s) 475, 496, 683, 707
DdeI CTNAG 6 cut(s) 210, 312, 438, 801, 828, 1254
DinI GGCGCC 1 cut(s) 1263
DpnI GATC 5 cut(s) 57, 75, 267, 716, 1182
DpnII GATC 5 cut(s) 55, 73, 265, 714, 1180
DriI GACNNNNNGTC 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 5 cut(s) 234, 243, 342, 615, 1206
Eam1105I GACNNNNNGTC 1 cut(s) 196
EarI CTCTTC 5 cut(s) 234, 243, 342, 615, 1206
Eco130I CCWWGG 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 634, 1298
Eco57I CTGAAG 4 cut(s) 38, 366, 1120, 1206
Eco81I CCTNAGG 1 cut(s) 1254
Eco88I CYCGRG 1 cut(s) 269
EcoNI CCTNNNNNAGG 2 cut(s) 933, 963
EcoO109I RGGNCCY 1 cut(s) 634
EcoT14I CCWWGG 1 cut(s) 375
EgeI GGCGCC 1 cut(s) 1263
EheI GGCGCC 1 cut(s) 1263
ErhI CCWWGG 1 cut(s) 375
Esp3I CGTCTC 1 cut(s) 318
FaeI CATG 2 cut(s) 199, 230
FaiI YATR 9 cut(s) 171, 197, 228, 473, 593, 738, 819, 1193, 1268
FatI CATG 2 cut(s) 195, 226
Fnu4HI GCNGC 6 cut(s) 372, 522, 543, 627, 813, 1197
FokI GGATG 3 cut(s) 925, 955, 985
Fsp4HI GCNGC 6 cut(s) 372, 522, 543, 627, 813, 1197
FspBI CTAG 3 cut(s) 656, 852, 1232
GlaI GCGC 7 cut(s) 807, 994, 1024, 1054, 1084, 1095, 1263
GluI GCNGC 6 cut(s) 372, 522, 543, 627, 813, 1197
GsuI CTGGAG 3 cut(s) 885, 909, 1119
HaeII RGCGCY 1 cut(s) 1265
HaeIII GGCC 2 cut(s) 374, 395
HapII CCGG 1 cut(s) 215
HgaI GACGC 1 cut(s) 335
HhaI GCGC 7 cut(s) 808, 995, 1025, 1055, 1085, 1096, 1264
Hin1I GRCGYC 1 cut(s) 1262
Hin1II CATG 2 cut(s) 199, 230
Hin6I GCGC 7 cut(s) 806, 993, 1023, 1053, 1083, 1094, 1262
HinP1I GCGC 7 cut(s) 806, 993, 1023, 1053, 1083, 1094, 1262
HincII GTYRAC 1 cut(s) 1132
HindII GTYRAC 1 cut(s) 1132
HinfI GANTC 4 cut(s) 109, 152, 260, 563
HpaII CCGG 1 cut(s) 215
Hpy166II GTNNAC 4 cut(s) 496, 709, 1132, 1298
Hpy188I TCNGA 5 cut(s) 55, 202, 265, 315, 403
Hpy188III TCNNGA 6 cut(s) 233, 269, 530, 560, 1184, 1205
Hpy8I GTNNAC 4 cut(s) 496, 709, 1132, 1298
Hpy99I CGWCG 4 cut(s) 191, 194, 732, 795
HpyAV CCTTC 7 cut(s) 87, 97, 138, 272, 398, 685, 817
HpyCH4III ACNGT 3 cut(s) 124, 356, 728
HpyCH4IV ACGT 1 cut(s) 790
HpyCH4V TGCA 4 cut(s) 48, 629, 1109, 1172
HpyF10VI GCNNNNNNNGC 9 cut(s) 28, 368, 392, 542, 812, 1050, 1080, 1091, 1232
HpyF3I CTNAG 6 cut(s) 210, 312, 438, 801, 828, 1254
HpySE526I ACGT 1 cut(s) 790
Hsp92I GRCGYC 1 cut(s) 1262
Hsp92II CATG 2 cut(s) 199, 230
HspAI GCGC 7 cut(s) 806, 993, 1023, 1053, 1083, 1094, 1262
KasI GGCGCC 1 cut(s) 1261
Kzo9I GATC 5 cut(s) 55, 73, 265, 714, 1180
LguI GCTCTTC 1 cut(s) 1206
LmnI GCTCC 3 cut(s) 165, 217, 292
Lsp1109I GCAGC 5 cut(s) 508, 529, 613, 799, 1183
LweI GCATC 9 cut(s) 338, 349, 439, 523, 656, 903, 933, 963, 1249
MaeI CTAG 3 cut(s) 656, 852, 1232
MaeII ACGT 1 cut(s) 790
MaeIII GTNAC 2 cut(s) 340, 407
MalI GATC 5 cut(s) 57, 75, 267, 716, 1182
MboI GATC 5 cut(s) 55, 73, 265, 714, 1180
MfeI CAATTG 1 cut(s) 23
MflI RGATCY 1 cut(s) 714
MluCI AATT 6 cut(s) 23, 444, 468, 613, 1269, 1289
Mly113I GGCGCC 1 cut(s) 1262
MlyI GAGTC 2 cut(s) 118, 557
MmeI TCCRAC 1 cut(s) 180
MseI TTAA 3 cut(s) 555, 687, 1148
MslI CAYNNNNRTG 1 cut(s) 503
MspCI CTTAAG 1 cut(s) 686
MspI CCGG 1 cut(s) 215
MunI CAATTG 1 cut(s) 23
Mva1269I GAATGC 4 cut(s) 888, 1008, 1038, 1068
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 9 cut(s) 28, 368, 392, 542, 812, 1050, 1080, 1091, 1232
NarI GGCGCC 1 cut(s) 1262
NdeII GATC 5 cut(s) 55, 73, 265, 714, 1180
NlaIII CATG 2 cut(s) 199, 230
NlaIV GGNNCC 4 cut(s) 294, 481, 1119, 1263
NmuCI GTSAC 1 cut(s) 340
NspI RCATGY 1 cut(s) 199
NspV TTCGAA 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 269
PciI ACATGT 1 cut(s) 195
PciSI GCTCTTC 1 cut(s) 1206
PctI GAATGC 4 cut(s) 888, 1008, 1038, 1068
PfeI GAWTC 2 cut(s) 152, 260
PflFI GACNNNGTC 1 cut(s) 789
PfoI TCCNGGA 2 cut(s) 717, 1120
PkrI GCNGC 6 cut(s) 373, 523, 544, 628, 814, 1198
PleI GAGTC 2 cut(s) 117, 557
PluTI GGCGCC 1 cut(s) 1265
PpsI GAGTC 2 cut(s) 117, 557
PpuMI RGGWCCY 1 cut(s) 634
PscI ACATGT 1 cut(s) 195
PshBI ATTAAT 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 634
PspN4I GGNNCC 4 cut(s) 294, 481, 1119, 1263
PspPI GGNCC 2 cut(s) 634, 1298
PspPPI RGGWCCY 1 cut(s) 634
PsrI GAACNNNNNNTAC 2 cut(s) 690, 722
PstI CTGCAG 1 cut(s) 1111
PsuI RGATCY 1 cut(s) 714
PsyI GACNNNGTC 1 cut(s) 789
RsaI GTAC 4 cut(s) 476, 497, 684, 708
RsaNI GTAC 4 cut(s) 475, 496, 683, 707
RseI CAYNNNNRTG 1 cut(s) 503
SapI GCTCTTC 1 cut(s) 1206
SaqAI TTAA 3 cut(s) 555, 687, 1148
SatI GCNGC 6 cut(s) 372, 522, 543, 627, 813, 1197
Sau3AI GATC 5 cut(s) 55, 73, 265, 714, 1180
Sau96I GGNCC 2 cut(s) 634, 1298
SchI GAGTC 2 cut(s) 118, 557
SfaNI GCATC 9 cut(s) 338, 349, 439, 523, 656, 903, 933, 963, 1249
SfcI CTRYAG 1 cut(s) 1107
SfoI GGCGCC 1 cut(s) 1263
Sfr274I CTCGAG 1 cut(s) 269
SfuI TTCGAA 1 cut(s) 155
SinI GGWCC 2 cut(s) 634, 1298
SlaI CTCGAG 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 3 cut(s) 104, 269, 686
SmoI CTYRAG 3 cut(s) 104, 269, 686
Sse9I AATT 6 cut(s) 23, 444, 468, 613, 1269, 1289
SsiI CCGC 2 cut(s) 94, 371
SspDI GGCGCC 1 cut(s) 1261
SspI AATATT 1 cut(s) 1146
SspMI CTAG 3 cut(s) 656, 852, 1232
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 3 cut(s) 124, 356, 728
TaiI ACGT 1 cut(s) 793
TaqI TCGA 4 cut(s) 39, 155, 258, 270
TasI AATT 6 cut(s) 23, 444, 468, 613, 1269, 1289
TatI WGTACW 2 cut(s) 495, 706
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 2 cut(s) 152, 260
Tru1I TTAA 3 cut(s) 555, 687, 1148
Tru9I TTAA 3 cut(s) 555, 687, 1148
TscAI CASTG 4 cut(s) 50, 349, 442, 496
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 5 cut(s) 521, 542, 626, 812, 1196
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 5 cut(s) 120, 215, 318, 521, 1229
TspRI CASTG 4 cut(s) 50, 349, 442, 496
Tth111I GACNNNGTC 1 cut(s) 789
Vha464I CTTAAG 1 cut(s) 686
VpaK11BI GGWCC 2 cut(s) 634, 1298
VspI ATTAAT 1 cut(s) 555
XagI CCTNNNNNAGG 2 cut(s) 933, 963
XapI RAATTY 1 cut(s) 1289
XceI RCATGY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 269
XspI CTAG 3 cut(s) 656, 852, 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.