AT4G23030

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
12072760 .. 12074580
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G23030.1

Sequence Viewer

Length: 1509 bp
ATGGCAGCTCCTTTGTTGATGATCATCAAGAACCAAACAGATCACCGACAAGATCCGAATCCGAACCCGACCCACCTTTCCTCTTCGATCCAAGAAGCCAAATCAATCGCCAAAATATCTCTCCCACTGATCTTAACCGGTTTACTTCTCTACTCTCGCTCAATGATCTCAATGCTCTTCCTCGGCCGTCTCAACGATCTCTCTGCTCTTTCCGGTGGCTCACTCGCCCTCGGCTTCGCTAACATCACGGGTTACTCTCTCCTCTCCGGTCTCTCTATCGGCATGGAACCCATCTGCGTTCAAGCCTTTGGCGCCAAAAGATTCAAACTTTTAGGCCTTGCTTTGCAAAGAACCACACTTTTGCTTCTCCTCTGTTCTCTTCCCATATCTATCCTCTGGCTCAACATCAAGAAGATCCTTCTCTTCTTCGGACAAGACGAAGAAATCTCAAACCAAGCTGAGATCTTTATCCTCTTCTCTCTCCCTGATCTGATCCTCCAATCTTTTTTACATCCTATCCGTATCTACCTCCGATCTCAATCGATCACTCTTCCTCTAACCTACTCTGCTTTCTTCGCAGTATTACTCCACATTCCGATTAACTACCTTCTCGTTTCTTCTCTCGGTCTCGGCCTTAAAGGAGTCGCCTTGGGAGCAATCTGGACTAATGTCAATCTCCTAGGGTTTCTAATCATCTACATAGTGTTTTCCGGTGTTTACCAGAAGACTTGGGGAGGATTCTCAATGGATTGCTTTAAAGGATGGAGATCTCTAATGAAACTAGCCATCCCTAGCTGCGTCTCGGTTTGTTTAGAGTGGTGGTGGTATGAAATCATGATTCTTCTATGTGGATTGTTACTTAACCCGCAAGCAACCGTGGCATCTATGGGAATCTTGATCCAAACCACCGCTTTGATCTACATTTTCCCTTCCTCTCTGAGTATCAGCGTATCGACACGTGTCGGGAATGAATTAGGTGCGAATCAGCCTGATAAAGCGAGGATAGCTGCGAGAACCGGACTTAGTTTAAGCCTTGGTTTAGGTTTATTGGCAATGTTTTTCGCTTTGATGGTGAGGAATTGCTGGGCAAGATTGTTCACAGATGAGGAAGAGATTGTGAAGTTGACTTCAATGGTTTTACCGATCATCGGGCTTTGCGAGCTAGGAAACTGTCCTCAGACCACATTGTGTGGAGTGTTGAGAGGAAGTGCGAGACCTAAGTTAGGAGCAAACATAAACTTGTGTTGTTTCTACTTTGTGGGAATGCCAGTGGCTGTATGGTTAAGTTTCTTTAGCGGGTTTGACTTCAAAGGACTATGGCTCGGTCTATTTGCAGCACAAGGCTCGTGCCTGATTTCGATGCTGGTCGTGTTGGCTAGGACTGATTGGGAAGTTGAGGTTCATAGAGCAAAAGAACTCATGACTAGATCATGTGATGGTGATGAAGATGATGGTAATACACCGTTTTTATTGGATTCTTTGGATATAGAAGAAAATCTTGTCTTCTAG

Protein Analysis

502

Amino Acids

55.23

Weight (kDa)

6.92

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 42 - 203 3.2e-39 MatE
MatE PF01554 264 - 427 3.2e-42 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AciI CCGC 3 cut(s) 866, 909, 1296
AclWI GGATC 5 cut(s) 47, 82, 409, 487, 892
AcoI YGGCCR 1 cut(s) 184
AcvI CACGTG 1 cut(s) 959
AcyI GRCGYC 1 cut(s) 312
AdeI CACNNNGTG 1 cut(s) 1188
AfiI CCNNNNNNNGG 2 cut(s) 1148, 1223
AflIII ACRYGT 2 cut(s) 956, 958
AgeI ACCGGT 1 cut(s) 137
AgsI TTSAA 4 cut(s) 302, 325, 1131, 1309
AluBI AGCT 5 cut(s) 8, 458, 795, 1007, 1162
AluI AGCT 5 cut(s) 8, 458, 795, 1007, 1162
Alw26I GTCTC 5 cut(s) 194, 275, 632, 805, 1207
AlwI GGATC 5 cut(s) 47, 82, 409, 487, 892
AlwNI CAGNNNCTG 1 cut(s) 1274
AoxI GGCC 3 cut(s) 184, 334, 631
ApeKI GCWGC 4 cut(s) 5, 795, 1007, 1334
AsiGI ACCGGT 1 cut(s) 137
AspA2I CCTAGG 1 cut(s) 679
AspLEI GCGC 1 cut(s) 314
AsuHPI GGTGA 3 cut(s) 35, 1084, 1451
AvrII CCTAGG 1 cut(s) 679
BanI GGYRCC 1 cut(s) 311
BauI CACGAG 1 cut(s) 1345
BbrPI CACGTG 1 cut(s) 959
BbsI GAAGAC 2 cut(s) 731, 1495
BbvI GCAGC 4 cut(s) 17, 782, 994, 1346
BccI CCATC 6 cut(s) 299, 756, 794, 1063, 1430, 1445
BceAI ACGGC 1 cut(s) 171
BcgI CGANNNNNNTGC 4 cut(s) 185, 219, 1326, 1360
BclI TGATCA 1 cut(s) 21
BcoDI GTCTC 5 cut(s) 194, 275, 632, 805, 1207
BfaI CTAG 7 cut(s) 680, 782, 792, 1163, 1377, 1425, 1507
BfoI RGCGCY 1 cut(s) 315
BglII AGATCT 2 cut(s) 462, 767
BisI GCNGC 4 cut(s) 6, 796, 1008, 1335
BlnI CCTAGG 1 cut(s) 679
BlsI GCNGC 4 cut(s) 7, 797, 1009, 1336
BmiI GGNNCC 2 cut(s) 288, 313
BmsI GCATC 2 cut(s) 890, 1350
BoxI GACNNNNGTC 2 cut(s) 668, 959
BpiI GAAGAC 2 cut(s) 731, 1495
Bsa29I ATCGAT 1 cut(s) 542
BsaAI YACGTR 1 cut(s) 959
BsaBI GATNNNNATC 5 cut(s) 23, 57, 467, 538, 766
BsaHI GRCGYC 1 cut(s) 312
BsaI GGTCTC 3 cut(s) 275, 632, 1207
BsaJI CCNNGG 6 cut(s) 181, 229, 648, 679, 876, 1033
BsaWI WCCGGW 5 cut(s) 137, 212, 266, 710, 1016
Bsc4I CCNNNNNNNGG 2 cut(s) 1148, 1223
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 1268
Bse3DI GCAATG 1 cut(s) 1059
Bse8I GATNNNNATC 5 cut(s) 23, 57, 467, 538, 766
BseCI ATCGAT 1 cut(s) 542
BseDI CCNNGG 6 cut(s) 181, 229, 648, 679, 876, 1033
BseGI GGATG 3 cut(s) 511, 767, 786
BseJI GATNNNNATC 5 cut(s) 23, 57, 467, 538, 766
BseLI CCNNNNNNNGG 2 cut(s) 1148, 1223
BseMI GCAATG 1 cut(s) 1059
BseMII CTCAG 3 cut(s) 450, 929, 1190
BseNI ACTGG 1 cut(s) 1268
BseRI GAGGAG 2 cut(s) 251, 359
BseX3I CGGCCG 1 cut(s) 184
BseXI GCAGC 4 cut(s) 17, 782, 994, 1346
BseYI CCCAGC 1 cut(s) 1083
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 3 cut(s) 186, 336, 633
BshNI GGYRCC 1 cut(s) 311
BshTI ACCGGT 1 cut(s) 137
BshVI ATCGAT 1 cut(s) 542
BsiEI CGRYCG 1 cut(s) 187
BsiSI CCGG 5 cut(s) 138, 213, 267, 711, 1017
BslI CCNNNNNNNGG 2 cut(s) 1148, 1223
BsmAI GTCTC 5 cut(s) 194, 275, 632, 805, 1207
BsmBI CGTCTC 2 cut(s) 194, 805
BsmI GAATGC 1 cut(s) 1269
BsnI GGCC 3 cut(s) 186, 336, 633
Bso31I GGTCTC 3 cut(s) 275, 632, 1207
BspACI CCGC 3 cut(s) 866, 909, 1296
BspANI GGCC 3 cut(s) 186, 336, 633
BspCNI CTCAG 3 cut(s) 451, 930, 1189
BspDI ATCGAT 1 cut(s) 542
BspHI TCATGA 2 cut(s) 834, 1419
BspLI GGNNCC 2 cut(s) 288, 313
BspPI GGATC 5 cut(s) 47, 82, 409, 487, 892
BspQI GCTCTTC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 311
BspTNI GGTCTC 3 cut(s) 275, 632, 1207
BsrDI GCAATG 1 cut(s) 1059
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 1268
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 6 cut(s) 181, 229, 648, 679, 876, 1033
BssNI GRCGYC 1 cut(s) 312
BssSI CACGAG 1 cut(s) 1345
BssT1I CCWWGG 3 cut(s) 648, 679, 1033
Bst2BI CACGAG 1 cut(s) 1345
Bst4CI ACNGT 3 cut(s) 877, 1172, 1464
Bst6I CTCTTC 7 cut(s) 88, 182, 384, 428, 479, 555, 1104
BstACI GRCGYC 1 cut(s) 312
BstBAI YACGTR 1 cut(s) 959
BstC8I GCNNGC 2 cut(s) 870, 1160
BstDEI CTNAG 5 cut(s) 459, 938, 1022, 1176, 1218
BstDSI CCRYGG 1 cut(s) 876
BstENI CCTNNNNNAGG 1 cut(s) 1221
BstF5I GGATG 3 cut(s) 511, 767, 786
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 1 cut(s) 314
BstMAI GTCTC 5 cut(s) 194, 275, 632, 805, 1207
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 6 cut(s) 311, 575, 653, 878, 1004, 1159
BstPAI GACNNNNGTC 2 cut(s) 668, 959
BstV1I GCAGC 4 cut(s) 17, 782, 994, 1346
BstV2I GAAGAC 2 cut(s) 731, 1495
BstX2I RGATCY 4 cut(s) 52, 414, 462, 767
BstYI RGATCY 4 cut(s) 52, 414, 462, 767
BstZI CGGCCG 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 542
BsuRI GGCC 3 cut(s) 186, 336, 633
BsuTUI ATCGAT 1 cut(s) 542
BtgI CCRYGG 1 cut(s) 876
BtsCI GGATG 3 cut(s) 511, 767, 786
BtsIMutI CAGTG 2 cut(s) 125, 1275
Cac8I GCNNGC 2 cut(s) 870, 1160
CaiI CAGNNNCTG 1 cut(s) 1274
CciI TCATGA 2 cut(s) 834, 1419
CfoI GCGC 1 cut(s) 314
Cfr10I RCCGGY 1 cut(s) 137
ClaI ATCGAT 1 cut(s) 542
CseI GACGC 1 cut(s) 787
CspAI ACCGGT 1 cut(s) 137
CviAII CATG 4 cut(s) 283, 835, 1420, 1431
DdeI CTNAG 5 cut(s) 459, 938, 1022, 1176, 1218
DinI GGCGCC 1 cut(s) 313
DraI TTTAAA 1 cut(s) 757
DraIII CACNNNGTG 1 cut(s) 1188
EaeI YGGCCR 1 cut(s) 184
EagI CGGCCG 1 cut(s) 184
Eam1104I CTCTTC 7 cut(s) 88, 182, 384, 428, 479, 555, 1104
EarI CTCTTC 7 cut(s) 88, 182, 384, 428, 479, 555, 1104
EclXI CGGCCG 1 cut(s) 184
Eco130I CCWWGG 3 cut(s) 648, 679, 1033
Eco147I AGGCCT 1 cut(s) 336
Eco31I GGTCTC 3 cut(s) 275, 632, 1207
Eco52I CGGCCG 1 cut(s) 184
Eco72I CACGTG 1 cut(s) 959
EcoNI CCTNNNNNAGG 1 cut(s) 1221
EcoT14I CCWWGG 3 cut(s) 648, 679, 1033
EgeI GGCGCC 1 cut(s) 313
EheI GGCGCC 1 cut(s) 313
ErhI CCWWGG 3 cut(s) 648, 679, 1033
Esp3I CGTCTC 2 cut(s) 194, 805
FaeI CATG 4 cut(s) 286, 838, 1423, 1434
FalI AAGNNNNNCTT 1 cut(s) 1482
FatI CATG 4 cut(s) 282, 834, 1419, 1430
FauI CCCGC 2 cut(s) 873, 1289
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 4 cut(s) 6, 796, 1008, 1335
FokI GGATG 3 cut(s) 498, 773, 774
Fsp4HI GCNGC 4 cut(s) 6, 796, 1008, 1335
FspBI CTAG 7 cut(s) 680, 782, 792, 1163, 1377, 1425, 1507
GlaI GCGC 1 cut(s) 313
GluI GCNGC 4 cut(s) 6, 796, 1008, 1335
GsaI CCCAGC 1 cut(s) 1087
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 3 cut(s) 186, 336, 633
HapII CCGG 5 cut(s) 138, 213, 267, 711, 1017
HgaI GACGC 1 cut(s) 787
HhaI GCGC 1 cut(s) 314
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 4 cut(s) 286, 838, 1423, 1434
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HincII GTYRAC 1 cut(s) 1125
HindII GTYRAC 1 cut(s) 1125
HinfI GANTC 8 cut(s) 58, 321, 642, 738, 838, 891, 982, 1475
HpaII CCGG 5 cut(s) 138, 213, 267, 711, 1017
HphI GGTGA 3 cut(s) 35, 1084, 1451
Hpy166II GTNNAC 4 cut(s) 143, 718, 1098, 1125
Hpy188I TCNGA 8 cut(s) 57, 63, 431, 492, 533, 597, 939, 1179
Hpy188III TCNNGA 7 cut(s) 28, 409, 661, 835, 895, 964, 1420
Hpy8I GTNNAC 4 cut(s) 143, 718, 1098, 1125
HpyAV CCTTC 3 cut(s) 428, 617, 939
HpyCH4III ACNGT 3 cut(s) 877, 1172, 1464
HpyCH4IV ACGT 1 cut(s) 958
HpyCH4V TGCA 2 cut(s) 346, 1334
HpyF10VI GCNNNNNNNGC 6 cut(s) 311, 575, 653, 878, 1004, 1159
HpyF3I CTNAG 5 cut(s) 459, 938, 1022, 1176, 1218
HpySE526I ACGT 1 cut(s) 958
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 4 cut(s) 286, 838, 1423, 1434
HspAI GCGC 1 cut(s) 312
KasI GGCGCC 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 21
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 3 cut(s) 13, 653, 1226
Lsp1109I GCAGC 4 cut(s) 17, 782, 994, 1346
LweI GCATC 2 cut(s) 890, 1350
MaeI CTAG 7 cut(s) 680, 782, 792, 1163, 1377, 1425, 1507
MaeII ACGT 1 cut(s) 958
MaeIII GTNAC 2 cut(s) 251, 855
MflI RGATCY 4 cut(s) 52, 414, 462, 767
MluCI AATT 2 cut(s) 971, 1078
Mly113I GGCGCC 1 cut(s) 312
MlyI GAGTC 1 cut(s) 651
MseI TTAA 7 cut(s) 134, 600, 636, 756, 861, 1028, 1283
MspI CCGG 5 cut(s) 138, 213, 267, 711, 1017
Mva1269I GAATGC 1 cut(s) 1269
MwoI GCNNNNNNNGC 6 cut(s) 311, 575, 653, 878, 1004, 1159
NarI GGCGCC 1 cut(s) 312
NlaIII CATG 4 cut(s) 286, 838, 1423, 1434
NlaIV GGNNCC 2 cut(s) 288, 313
NmeAIII GCCGAG 3 cut(s) 162, 210, 609
PagI TCATGA 2 cut(s) 834, 1419
PceI AGGCCT 1 cut(s) 336
PciSI GCTCTTC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 2 cut(s) 435, 1155
PctI GAATGC 1 cut(s) 1269
PfeI GAWTC 7 cut(s) 58, 321, 738, 838, 891, 982, 1475
PinAI ACCGGT 1 cut(s) 137
PkrI GCNGC 4 cut(s) 7, 797, 1009, 1336
PleI GAGTC 1 cut(s) 650
PluTI GGCGCC 1 cut(s) 315
PmaCI CACGTG 1 cut(s) 959
PmlI CACGTG 1 cut(s) 959
PpsI GAGTC 1 cut(s) 650
Ppu21I YACGTR 1 cut(s) 959
PshAI GACNNNNGTC 2 cut(s) 668, 959
PspCI CACGTG 1 cut(s) 959
PspFI CCCAGC 1 cut(s) 1083
PspN4I GGNNCC 2 cut(s) 288, 313
PstNI CAGNNNCTG 1 cut(s) 1274
PsuI RGATCY 4 cut(s) 52, 414, 462, 767
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 7 cut(s) 134, 600, 636, 756, 861, 1028, 1283
SatI GCNGC 4 cut(s) 6, 796, 1008, 1335
SchI GAGTC 1 cut(s) 651
SfaNI GCATC 2 cut(s) 890, 1350
SfoI GGCGCC 1 cut(s) 313
Sse9I AATT 2 cut(s) 971, 1078
SseBI AGGCCT 1 cut(s) 336
SsiI CCGC 3 cut(s) 866, 909, 1296
SspDI GGCGCC 1 cut(s) 311
SspMI CTAG 7 cut(s) 680, 782, 792, 1163, 1377, 1425, 1507
StuI AGGCCT 1 cut(s) 336
StyI CCWWGG 3 cut(s) 648, 679, 1033
TaaI ACNGT 3 cut(s) 877, 1172, 1464
TaiI ACGT 1 cut(s) 961
TaqI TCGA 4 cut(s) 86, 542, 953, 1358
TaqII GACCGA 2 cut(s) 614, 1313
TasI AATT 2 cut(s) 971, 1078
TfiI GAWTC 7 cut(s) 58, 321, 738, 838, 891, 982, 1475
Tru1I TTAA 7 cut(s) 134, 600, 636, 756, 861, 1028, 1283
Tru9I TTAA 7 cut(s) 134, 600, 636, 756, 861, 1028, 1283
TscAI CASTG 2 cut(s) 132, 1275
TseI GCWGC 4 cut(s) 5, 795, 1007, 1334
TspDTI ATGAA 5 cut(s) 791, 843, 984, 1391, 1458
TspGWI ACGGA 1 cut(s) 509
TspRI CASTG 2 cut(s) 132, 1275
XagI CCTNNNNNAGG 1 cut(s) 1221
XcmI CCANNNNNNNNNTGG 1 cut(s) 1275
XmaJI CCTAGG 1 cut(s) 679
XspI CTAG 7 cut(s) 680, 782, 792, 1163, 1377, 1425, 1507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.