Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002987

Physical Location & Seq

Genomic Coordinates Forward (+)

18087728 .. 18088855

Gene Structure 1128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1072600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAAAATAATTTTGCTTTCTTGTGGCCAACAAGATGAGATTGCAACTGAGGCTCATTCTTACATTCTTTACTCTCTTCCTGACCTCATTGCTCAAAGCCTGTTGCACCCTTTGCGAATTTATCTCCAAACTCAATCCGTAACCGTGCCTCTCACATTCTGTGCAGCTTTGGCTATTGTTCTTCACATTCCCGTCAATTACCTTCTTGTTCATGTGCTCAATCTCGGCATCAACGACGTGGCGCTAAGCGGGGTTTGGACTAATGTCAACCTTGTAGGGTCATTGATTGCTTACATTGCAATCTCGGGTGTGTACAAGAAAACTTGGGGTGGTTTTTCCAAAGAGTTCTTTAAAGGGTGGAAAAATCTAATGAATTTGGCCATTCCAAGTTGTATCTCGGTTTGTTTAGAATGGTGGTGGTATGAGATCATGATTTTGCTATGTGGTTTGTTGCTTAACCCTCAAGCAACAGTTGCTTCAATGGGAATTCTGATCCAAACCACAGCTTTGATATACATTTCCCCATCTTCTTTAAGCTTTGGTGTGTCAACAAGGGTGGGAAATGAGCTTGGTGCTAACCGCCCGGGAAGAGCAAGACTTGCAACAATCGTAGGCCTATCTTATAGCTTCATATTGGGATTTTCAGCATTGTTGTTTGCCGTGACTGTGAGGAACATTTGGGCCAGCATGTTCACCCAAGAGTCGGAGATCATTGCATTGACGTCAATGGTGTTGCCAATTATCGGCCTATGCGAGCTCGGAAACTGCCCACAAACAACAGGTTGTGGTGTTTTGAGGGGAACTGCTAGGCCTAAATTGGGAGCAAACATAAACTTAGGTTGCTTTTATCTTGTGGGAATGCCTGTAGCTGTGTGTTTGAGTTTTTATGCAGGGTTTGATTTTAGAGGACTTTGGCTTGGTCTTCTGGCAGCCCAAGGCTCATGTGTTCTGACCATGTTGATTGTTTTGTTTACAACCAATTGGGATCTTCAAGCCCAGAGAGCCAAGGAGCTCACAGGAACTTTCACCATTGATGGCGATGATGATTTTCAAGATATTGATGAAGCTAGTGAGTCTTTGAGTCCATCACCAAACACACAAGAATGCAACAAATTATCACTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

376

Amino Acids

40.78

Weight (kDa)

5.39

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	3 - 68	3.4e-07	MatE
MatE	PF01554	129 - 291	1.8e-34	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23030 AT5G52050
fragaria_vesca	FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_7g29000
malus_domestica	MD01G1196800.v1.1 MD04G1067600.v1.1 MD06G1072600.v1.1 MD07G1264100.v1.1
prunus_persica	Prupe.2G290200_v2.0.a1 Prupe.5G091200_v2.0.a1
pyrus_communis	pycom06g07200 pycom06g07210 pycom07g24280
rosa_chinensis	RchiOBHm_Chr1g0376711 RchiOBHm_Chr7g0199211
rosa_laevigata	RLG00000003806 RLG00000026577
rosa_multiflora	Rmu_sc0000950.1_g000021 Rmu_sc0006266.1_g000073 Rmu_sc0009691.1_g000001 Rmu_sc0017062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281860
rosa_rugosa	Rorug01G0397700.1 Rorug07G0053400
rosa_samantha	Rh1AG414800 Rh1BG374200 Rh1CG388100 Rh1DG405000 Rh7AG177100 Rh7BG180600 Rh7CG186300 Rh7DG180300
rosa_wichuraiana	Rw1G036380 Rw7G015590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	725
AciI	CCGC	2 cut(s)	249, 580
AclWI	GGATC	2 cut(s)	487, 993
AcoI	YGGCCR	2 cut(s)	25, 378
AcsI	RAATTY	3 cut(s)	117, 373, 486
AcyI	GRCGYC	1 cut(s)	722
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	3 cut(s)	703, 743, 818
AgsI	TTSAA	3 cut(s)	480, 992, 1052
AhlI	ACTAGT	1 cut(s)	1120
AjiI	CACGTC	1 cut(s)	238
AluBI	AGCT	9 cut(s)	167, 506, 537, 568, 627, 757, 869, 1012, 1067
AluI	AGCT	9 cut(s)	167, 506, 537, 568, 627, 757, 869, 1012, 1067
Alw21I	GWGCWC	3 cut(s)	219, 759, 1014
AlwI	GGATC	2 cut(s)	487, 993
Ama87I	CYCGRG	2 cut(s)	304, 583
AoxI	GGCC	6 cut(s)	25, 378, 613, 681, 745, 809
ApeKI	GCWGC	2 cut(s)	164, 929
ApoI	RAATTY	3 cut(s)	117, 373, 486
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	681
AsuC2I	CCSGG	2 cut(s)	584, 585
AsuHPI	GGTGA	3 cut(s)	685, 1018, 1080
AvaI	CYCGRG	2 cut(s)	304, 583
BalI	TGGCCA	2 cut(s)	27, 380
BanII	GRGCYC	2 cut(s)	759, 1014
BbsI	GAAGAC	1 cut(s)	914
Bbv12I	GWGCWC	3 cut(s)	219, 759, 1014
BbvI	GCAGC	2 cut(s)	176, 941
BccI	CCATC	3 cut(s)	532, 1028, 1093
BceAI	ACGGC	1 cut(s)	644
BcnI	CCSGG	2 cut(s)	584, 585
BcuI	ACTAGT	1 cut(s)	1120
BfaI	CTAG	3 cut(s)	807, 1068, 1121
BfmI	CTRYAG	1 cut(s)	864
BfoI	RGCGCY	1 cut(s)	245
BisI	GCNGC	2 cut(s)	165, 930
BlpI	GCTNAGC	1 cut(s)	245
BlsI	GCNGC	2 cut(s)	166, 931
Bme1390I	CCNGG	2 cut(s)	584, 585
BmeT110I	CYCGRG	2 cut(s)	304, 583
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	681
BmrFI	CCNGG	2 cut(s)	584, 585
BmsI	GCATC	1 cut(s)	237
BoxI	GACNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	914
Bpu1102I	GCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	447
BpuMI	CCSGG	2 cut(s)	584, 585
BsaHI	GRCGYC	1 cut(s)	722
BsaJI	CCNNGG	3 cut(s)	583, 934, 1005
Bsc4I	CCNNNNNNNGG	3 cut(s)	703, 743, 818
Bse3DI	GCAATG	3 cut(s)	87, 294, 711
BseDI	CCNNGG	3 cut(s)	583, 934, 1005
BseLI	CCNNNNNNNGG	3 cut(s)	703, 743, 818
BseMI	GCAATG	3 cut(s)	87, 294, 711
BseMII	CTCAG	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	176, 941
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	6 cut(s)	27, 380, 615, 683, 747, 811
BsiHKAI	GWGCWC	3 cut(s)	219, 759, 1014
BsiHKCI	CYCGRG	2 cut(s)	304, 583
BsiSI	CCGG	1 cut(s)	584
BslI	CCNNNNNNNGG	3 cut(s)	703, 743, 818
BsmI	GAATGC	2 cut(s)	864, 1109
BsnI	GGCC	6 cut(s)	27, 380, 615, 683, 747, 811
BsoBI	CYCGRG	2 cut(s)	304, 583
Bsp1286I	GDGCHC	3 cut(s)	219, 759, 1014
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	4 cut(s)	426, 492, 708, 985
Bsp1720I	GCTNAGC	1 cut(s)	245
BspACI	CCGC	2 cut(s)	249, 580
BspANI	GGCC	6 cut(s)	27, 380, 615, 683, 747, 811
BspCNI	CTCAG	1 cut(s)	40
BspHI	TCATGA	1 cut(s)	429
BspPI	GGATC	2 cut(s)	487, 993
BspQI	GCTCTTC	1 cut(s)	583
BsrDI	GCAATG	3 cut(s)	87, 294, 711
BsrGI	TGTACA	1 cut(s)	312
BssECI	CCNNGG	3 cut(s)	583, 934, 1005
BssMI	GATC	4 cut(s)	426, 492, 708, 985
BssNI	GRCGYC	1 cut(s)	722
BssT1I	CCWWGG	2 cut(s)	934, 1005
Bst4CI	ACNGT	3 cut(s)	145, 472, 667
Bst6I	CTCTTC	2 cut(s)	81, 583
BstACI	GRCGYC	1 cut(s)	722
BstAPI	GCANNNNNTGC	3 cut(s)	112, 473, 599
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	685, 755
BstDEI	CTNAG	3 cut(s)	48, 245, 835
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	4 cut(s)	429, 495, 711, 988
BstMBI	GATC	4 cut(s)	426, 492, 708, 985
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 112, 170, 296, 473, 599, 1001
BstNSI	RCATGY	1 cut(s)	691
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	582, 583
BstSFI	CTRYAG	1 cut(s)	864
BstV1I	GCAGC	2 cut(s)	176, 941
BstV2I	GAAGAC	1 cut(s)	914
BstX2I	RGATCY	1 cut(s)	985
BstYI	RGATCY	1 cut(s)	985
BsuRI	GGCC	6 cut(s)	27, 380, 615, 683, 747, 811
BtgZI	GCGATG	1 cut(s)	1053
BtrI	CACGTC	1 cut(s)	238
Cac8I	GCNNGC	2 cut(s)	685, 755
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	681
Cfr9I	CCCGGG	1 cut(s)	583
Csp6I	GTAC	1 cut(s)	313
CspCI	CAANNNNNGTGG	2 cut(s)	537, 572
CviAII	CATG	5 cut(s)	212, 430, 688, 942, 955
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	3 cut(s)	48, 245, 835
DpnI	GATC	4 cut(s)	428, 494, 710, 987
DpnII	GATC	4 cut(s)	426, 492, 708, 985
DraI	TTTAAA	1 cut(s)	352
EaeI	YGGCCR	2 cut(s)	25, 378
Eam1104I	CTCTTC	2 cut(s)	81, 583
EarI	CTCTTC	2 cut(s)	81, 583
Ecl136II	GAGCTC	2 cut(s)	757, 1012
Eco130I	CCWWGG	2 cut(s)	934, 1005
Eco147I	AGGCCT	2 cut(s)	615, 811
Eco24I	GRGCYC	2 cut(s)	759, 1014
Eco53kI	GAGCTC	2 cut(s)	757, 1012
Eco88I	CYCGRG	2 cut(s)	304, 583
EcoICRI	GAGCTC	2 cut(s)	757, 1012
EcoRI	GAATTC	1 cut(s)	486
EcoT14I	CCWWGG	2 cut(s)	934, 1005
EcoT38I	GRGCYC	2 cut(s)	759, 1014
ErhI	CCWWGG	2 cut(s)	934, 1005
FaeI	CATG	5 cut(s)	215, 433, 691, 945, 958
FatI	CATG	5 cut(s)	211, 429, 687, 941, 954
FauI	CCCGC	1 cut(s)	242
Fnu4HI	GCNGC	2 cut(s)	165, 930
FriOI	GRGCYC	2 cut(s)	759, 1014
Fsp4HI	GCNGC	2 cut(s)	165, 930
FspBI	CTAG	3 cut(s)	807, 1068, 1121
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	2 cut(s)	165, 930
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	6 cut(s)	27, 380, 615, 683, 747, 811
HapII	CCGG	1 cut(s)	584
HhaI	GCGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	722
Hin1II	CATG	5 cut(s)	215, 433, 691, 945, 958
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	2 cut(s)	268, 549
HindII	GTYRAC	2 cut(s)	268, 549
HindIII	AAGCTT	1 cut(s)	535
HinfI	GANTC	3 cut(s)	701, 1073, 1081
HpaII	CCGG	1 cut(s)	584
HphI	GGTGA	3 cut(s)	685, 1018, 1080
Hpy166II	GTNNAC	5 cut(s)	268, 313, 549, 693, 972
Hpy188I	TCNGA	4 cut(s)	492, 706, 761, 951
Hpy188III	TCNNGA	3 cut(s)	80, 430, 1052
Hpy8I	GTNNAC	5 cut(s)	268, 313, 549, 693, 972
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	3 cut(s)	145, 472, 667
HpyCH4IV	ACGT	2 cut(s)	237, 722
HpyCH4V	TGCA	8 cut(s)	44, 106, 164, 299, 602, 716, 890, 1107
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 112, 170, 296, 473, 599, 1001
HpyF3I	CTNAG	3 cut(s)	48, 245, 835
HpySE526I	ACGT	2 cut(s)	237, 722
Hsp92I	GRCGYC	1 cut(s)	722
Hsp92II	CATG	5 cut(s)	215, 433, 691, 945, 958
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	4 cut(s)	426, 492, 708, 985
LguI	GCTCTTC	1 cut(s)	583
LmnI	GCTCC	2 cut(s)	821, 1009
Lsp1109I	GCAGC	2 cut(s)	176, 941
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	3 cut(s)	807, 1068, 1121
MaeII	ACGT	2 cut(s)	237, 722
MaeIII	GTNAC	2 cut(s)	139, 661
MalI	GATC	4 cut(s)	428, 494, 710, 987
MboI	GATC	4 cut(s)	426, 492, 708, 985
MboII	GAAGA	6 cut(s)	68, 173, 519, 600, 914, 980
MfeI	CAATTG	1 cut(s)	979
MflI	RGATCY	1 cut(s)	985
MhlI	GDGCHC	3 cut(s)	219, 759, 1014
MlsI	TGGCCA	2 cut(s)	27, 380
MluCI	AATT	9 cut(s)	9, 117, 196, 373, 486, 738, 815, 979, 1112
MluNI	TGGCCA	2 cut(s)	27, 380
MlyI	GAGTC	3 cut(s)	710, 1082, 1090
MmeI	TCCRAC	1 cut(s)	684
MnlI	CCTC	7 cut(s)	43, 95, 159, 471, 663, 789, 899
Mox20I	TGGCCA	2 cut(s)	27, 380
MscI	TGGCCA	2 cut(s)	27, 380
MseI	TTAA	3 cut(s)	351, 456, 533
MslI	CAYNNNNRTG	2 cut(s)	1102, 1123
Msp20I	TGGCCA	2 cut(s)	27, 380
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	2 cut(s)	584, 585
MunI	CAATTG	1 cut(s)	979
Mva1269I	GAATGC	2 cut(s)	864, 1109
MwoI	GCNNNNNNNGC	7 cut(s)	50, 112, 170, 296, 473, 599, 1001
NciI	CCSGG	2 cut(s)	584, 585
NdeII	GATC	4 cut(s)	426, 492, 708, 985
NlaIII	CATG	5 cut(s)	215, 433, 691, 945, 958
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	661
NspI	RCATGY	1 cut(s)	691
PagI	TCATGA	1 cut(s)	429
PceI	AGGCCT	2 cut(s)	615, 811
PciSI	GCTCTTC	1 cut(s)	583
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 750
PctI	GAATGC	2 cut(s)	864, 1109
PkrI	GCNGC	2 cut(s)	166, 931
PleI	GAGTC	3 cut(s)	709, 1081, 1089
PpsI	GAGTC	3 cut(s)	709, 1081, 1089
PshAI	GACNNNNGTC	1 cut(s)	263
Psp124BI	GAGCTC	2 cut(s)	759, 1014
PspPI	GGNCC	1 cut(s)	681
PsuI	RGATCY	1 cut(s)	985
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	2 cut(s)	1102, 1123
SacI	GAGCTC	2 cut(s)	759, 1014
SapI	GCTCTTC	1 cut(s)	583
SaqAI	TTAA	3 cut(s)	351, 456, 533
SatI	GCNGC	2 cut(s)	165, 930
Sau3AI	GATC	4 cut(s)	426, 492, 708, 985
Sau96I	GGNCC	1 cut(s)	681
SchI	GAGTC	3 cut(s)	710, 1082, 1090
ScrFI	CCNGG	2 cut(s)	584, 585
SduI	GDGCHC	3 cut(s)	219, 759, 1014
SfaNI	GCATC	1 cut(s)	237
SfcI	CTRYAG	1 cut(s)	864
SmaI	CCCGGG	1 cut(s)	585
SmiMI	CAYNNNNRTG	2 cut(s)	1102, 1123
SmlI	CTYRAG	1 cut(s)	462
SmoI	CTYRAG	1 cut(s)	462
SpeI	ACTAGT	1 cut(s)	1120
Sse9I	AATT	9 cut(s)	9, 117, 196, 373, 486, 738, 815, 979, 1112
SseBI	AGGCCT	2 cut(s)	615, 811
SsiI	CCGC	2 cut(s)	249, 580
SspMI	CTAG	3 cut(s)	807, 1068, 1121
SstI	GAGCTC	2 cut(s)	759, 1014
StuI	AGGCCT	2 cut(s)	615, 811
StyD4I	CCNGG	2 cut(s)	582, 583
StyI	CCWWGG	2 cut(s)	934, 1005
TaaI	ACNGT	3 cut(s)	145, 472, 667
TaiI	ACGT	2 cut(s)	240, 725
TasI	AATT	9 cut(s)	9, 117, 196, 373, 486, 738, 815, 979, 1112
TatI	WGTACW	1 cut(s)	312
Tru1I	TTAA	3 cut(s)	351, 456, 533
Tru9I	TTAA	3 cut(s)	351, 456, 533
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	2 cut(s)	164, 929
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	5 cut(s)	17, 200, 386, 619, 1077
TspGWI	ACGGA	1 cut(s)	127
TspMI	CCCGGG	1 cut(s)	583
XapI	RAATTY	3 cut(s)	117, 373, 486
XceI	RCATGY	1 cut(s)	691
XmaI	CCCGGG	1 cut(s)	583
XspI	CTAG	3 cut(s)	807, 1068, 1121
ZraI	GACGTC	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.