Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002987

Physical Location & Seq

Genomic Coordinates Reverse (-)

9061182 .. 9062705

Gene Structure 1524 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1067600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGGACAAAGCTCCTTTGATCCCAGAAAGCCCAAAACTTGAGCAATACAACCAGAATCCCCACAAAACCCATCTATCTTTAGCTCTCACAGAAGCCAAATGCATAGCCAACATAGCTTTCCCAATGGTATTGACGGGTCTATTACTCTACTCTCGCTCAATGATCTCCATGCTCTTCCTAGGCCACCTCGGCGAGCTTTCATTGGCTGGTGGCTCGCTTTCCATAGGATTTGCCAACATCACAGGTTATTCTGTTCTCTCTGGCCTTGCCATGGGGATGGAACCCATTTGCGGCCAAGCTTACGGAGCCAAAAAATTCAAACTTTTAGGCCTAACCCTGCAGAGAACAGTTATTCTTCTTCTCTTAACTTCAATCCCAATTGCATTTCTGTGGTTCAACATGAAAGCGATTTTGCTTTTTTGTGGCCAACAAGATGAGATTGCAACTGAGGCTCATTCTTACATTCTTTACTCTCTTCCTGACCTCCTTGCTCAAAGCCTTTTGCACCCTTTGCGAATTTATCTTCGAACTCAATCCATAACCATGCCTCTCACATTCTGTGCAGCTTTGGCTATTCTTCTTCACATTCCCATCAATTACCTTCTTGTTCATGTTCTCAATCTTGGGATCAAAGGCATGGCACTAAGCGGGGTTTGGACTAATGTCAACCTCGTTGGATCATTGATAGCTTACATTGCAATCTCTGGTGTGTACAAGAAAACATGGGGTGGTTTTTCCAAAGAGTGCTTCACAGGGTGGAAAAATCTAATGAATTTGGCCATTCCAAGTTGCATATCGGTTTGTTTAGAATGGTGGTGGTATGAGATCATGATTTTGCTATGTGGTTTGTTGCTTAACCCTCAAGCAACTGTTGCTTCAATGGGAATTCTGATCCAAACCACAGCGTTGATATACATTTTCCCATCTTCCTTAAGCTTTGGTGTGTCAACAAGGGTAGGAAATGAGCTTGGTGCTAACCGCCCCGAAAGAGCAAGACTTGCAACAATTGTAGGCCTATCTTATAGCTTCATATTGGGATTTTCAGCATTGTTGTTTGCTGTGACTGTGAGGAATATTTGGGCCAGCATGTTCACCAAAGACTCGGAGATTATTGCATTGACATCAATGGTGTTGCCAATTATTGGCCTATGCGAGCTCGGAAACTGCCCACAAACTACAGGTTGTGGTGTTTTGAGGGGAATTGCTAGGCCAAAATTGGGAGCAAACATAAACTTGGGTTGCTTTTATCTTGTGGGAATGCCTGTTGCTGTGTGGTTGAGTTTTTATGTACAGTTTGATTTTAGAGGACTTTGGCTTGGTCTTCTGGCAGCCCAAGGCTCATGTGTTTTGACCATGTTGTTTGTTTTGTTTAGAACCAATTGGGATCTTCAAGCCCAGAGAGCCAAGGAGCTCACAGGAACTTTTACCATTGATGATGATGATTTTCAAGATTTCGATAAAGCTAGTGAGTCTTTGAGTTCATTTCAAAACACAGAAGAATGCAAAAATTTATCTCTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

508

Amino Acids

55.64

Weight (kDa)

7.87

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	41 - 201	1.4e-38	MatE
MatE	PF01554	262 - 425	4.6e-36	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23030 AT5G52050
fragaria_vesca	FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_7g29000
malus_domestica	MD01G1196800.v1.1 MD04G1067600.v1.1 MD06G1072600.v1.1 MD07G1264100.v1.1
prunus_persica	Prupe.2G290200_v2.0.a1 Prupe.5G091200_v2.0.a1
pyrus_communis	pycom06g07200 pycom06g07210 pycom07g24280
rosa_chinensis	RchiOBHm_Chr1g0376711 RchiOBHm_Chr7g0199211
rosa_laevigata	RLG00000003806 RLG00000026577
rosa_multiflora	Rmu_sc0000950.1_g000021 Rmu_sc0006266.1_g000073 Rmu_sc0009691.1_g000001 Rmu_sc0017062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281860
rosa_rugosa	Rorug01G0397700.1 Rorug07G0053400
rosa_samantha	Rh1AG414800 Rh1BG374200 Rh1CG388100 Rh1DG405000 Rh7AG177100 Rh7BG180600 Rh7CG186300 Rh7DG180300
rosa_wichuraiana	Rw1G036380 Rw7G015590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1142
AciI	CCGC	3 cut(s)	291, 648, 979
AclWI	GGATC	5 cut(s)	13, 635, 685, 886, 1392
AcoI	YGGCCR	3 cut(s)	292, 424, 777
AcsI	RAATTY	5 cut(s)	314, 516, 772, 885, 1507
AdeI	CACNNNGTG	1 cut(s)	756
AfaI	GTAC	2 cut(s)	713, 1290
AfiI	CCNNNNNNNGG	4 cut(s)	271, 290, 1142, 1217
AflII	CTTAAG	1 cut(s)	931
AgsI	TTSAA	7 cut(s)	319, 372, 397, 879, 1391, 1448, 1487
AjuI	GAANNNNNNNTTGG	4 cut(s)	101, 133, 731, 763
Alw21I	GWGCWC	2 cut(s)	1158, 1413
AlwI	GGATC	5 cut(s)	13, 635, 685, 886, 1392
ApeKI	GCWGC	2 cut(s)	563, 1328
ApoI	RAATTY	5 cut(s)	314, 516, 772, 885, 1507
AspA2I	CCTAGG	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	1080
AsuHPI	GGTGA	1 cut(s)	1084
AsuII	TTCGAA	1 cut(s)	526
AvrII	CCTAGG	1 cut(s)	178
BalI	TGGCCA	2 cut(s)	426, 779
BanII	GRGCYC	2 cut(s)	1158, 1413
BbsI	GAAGAC	1 cut(s)	1313
Bbv12I	GWGCWC	2 cut(s)	1158, 1413
BbvI	GCAGC	2 cut(s)	575, 1340
BccI	CCATC	4 cut(s)	78, 271, 599, 931
BfaI	CTAG	3 cut(s)	179, 1206, 1464
BfmI	CTRYAG	2 cut(s)	338, 1176
BfrI	CTTAAG	1 cut(s)	931
BglI	GCCNNNNNGGC	1 cut(s)	189
BisI	GCNGC	3 cut(s)	292, 564, 1329
BlnI	CCTAGG	1 cut(s)	178
BlsI	GCNGC	3 cut(s)	293, 565, 1330
BmgT120I	GGNCC	1 cut(s)	1080
BmiI	GGNNCC	2 cut(s)	282, 307
BoxI	GACNNNNGTC	1 cut(s)	662
BpiI	GAAGAC	1 cut(s)	1313
Bpu14I	TTCGAA	1 cut(s)	526
BpuEI	CTTGAG	2 cut(s)	59, 846
BsaJI	CCNNGG	5 cut(s)	178, 187, 270, 1333, 1404
Bsc4I	CCNNNNNNNGG	4 cut(s)	271, 290, 1142, 1217
Bse3DI	GCAATG	1 cut(s)	693
BseDI	CCNNGG	5 cut(s)	178, 187, 270, 1333, 1404
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	4 cut(s)	271, 290, 1142, 1217
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	1 cut(s)	438
BseXI	GCAGC	2 cut(s)	575, 1340
BsgI	GTGCAG	1 cut(s)	582
BsiHKAI	GWGCWC	2 cut(s)	1158, 1413
BslI	CCNNNNNNNGG	4 cut(s)	271, 290, 1142, 1217
BsmI	GAATGC	2 cut(s)	1263, 1505
Bsp119I	TTCGAA	1 cut(s)	526
Bsp1286I	GDGCHC	2 cut(s)	1158, 1413
Bsp1407I	TGTACA	2 cut(s)	711, 1288
Bsp143I	GATC	7 cut(s)	18, 162, 627, 677, 825, 891, 1384
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	3 cut(s)	291, 648, 979
BspCNI	CTCAG	1 cut(s)	439
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	2 cut(s)	282, 307
BspMAI	CTGCAG	1 cut(s)	342
BspPI	GGATC	5 cut(s)	13, 635, 685, 886, 1392
BspQI	GCTCTTC	1 cut(s)	179
BspT104I	TTCGAA	1 cut(s)	526
BspTI	CTTAAG	1 cut(s)	931
BsrDI	GCAATG	1 cut(s)	693
BsrGI	TGTACA	2 cut(s)	711, 1288
BssECI	CCNNGG	5 cut(s)	178, 187, 270, 1333, 1404
BssMI	GATC	7 cut(s)	18, 162, 627, 677, 825, 891, 1384
BssT1I	CCWWGG	4 cut(s)	178, 270, 1333, 1404
Bst4CI	ACNGT	4 cut(s)	349, 871, 1066, 1293
Bst6I	CTCTTC	2 cut(s)	179, 480
BstAFI	CTTAAG	1 cut(s)	931
BstAPI	GCANNNNNTGC	3 cut(s)	511, 872, 998
BstAUI	TGTACA	2 cut(s)	711, 1288
BstBI	TTCGAA	1 cut(s)	526
BstC8I	GCNNGC	4 cut(s)	194, 215, 1084, 1154
BstDEI	CTNAG	2 cut(s)	447, 644
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	282
BstKTI	GATC	7 cut(s)	21, 165, 630, 680, 828, 894, 1387
BstMBI	GATC	7 cut(s)	18, 162, 627, 677, 825, 891, 1384
BstNSI	RCATGY	1 cut(s)	1090
BstPAI	GACNNNNGTC	1 cut(s)	662
BstSFI	CTRYAG	2 cut(s)	338, 1176
BstV1I	GCAGC	2 cut(s)	575, 1340
BstV2I	GAAGAC	1 cut(s)	1313
BstX2I	RGATCY	1 cut(s)	1384
BstXI	CCANNNNNNTGG	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	1384
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	282
Cac8I	GCNNGC	4 cut(s)	194, 215, 1084, 1154
CciI	TCATGA	1 cut(s)	828
Cfr13I	GGNCC	1 cut(s)	1080
Csp6I	GTAC	2 cut(s)	712, 1289
CviQI	GTAC	2 cut(s)	712, 1289
DdeI	CTNAG	2 cut(s)	447, 644
DpnI	GATC	7 cut(s)	20, 164, 629, 679, 827, 893, 1386
DpnII	GATC	7 cut(s)	18, 162, 627, 677, 825, 891, 1384
DraIII	CACNNNGTG	1 cut(s)	756
EaeI	YGGCCR	3 cut(s)	292, 424, 777
Eam1104I	CTCTTC	2 cut(s)	179, 480
EarI	CTCTTC	2 cut(s)	179, 480
Ecl136II	GAGCTC	2 cut(s)	1156, 1411
Eco130I	CCWWGG	4 cut(s)	178, 270, 1333, 1404
Eco147I	AGGCCT	2 cut(s)	330, 1014
Eco24I	GRGCYC	2 cut(s)	1158, 1413
Eco53kI	GAGCTC	2 cut(s)	1156, 1411
EcoICRI	GAGCTC	2 cut(s)	1156, 1411
EcoRI	GAATTC	1 cut(s)	885
EcoT14I	CCWWGG	4 cut(s)	178, 270, 1333, 1404
EcoT22I	ATGCAT	1 cut(s)	104
EcoT38I	GRGCYC	2 cut(s)	1158, 1413
ErhI	CCWWGG	4 cut(s)	178, 270, 1333, 1404
FauI	CCCGC	1 cut(s)	641
Fnu4HI	GCNGC	3 cut(s)	292, 564, 1329
FokI	GGATG	1 cut(s)	289
FriOI	GRGCYC	2 cut(s)	1158, 1413
Fsp4HI	GCNGC	3 cut(s)	292, 564, 1329
FspBI	CTAG	3 cut(s)	179, 1206, 1464
GluI	GCNGC	3 cut(s)	292, 564, 1329
HincII	GTYRAC	2 cut(s)	667, 948
HindII	GTYRAC	2 cut(s)	667, 948
HindIII	AAGCTT	2 cut(s)	297, 934
HinfI	GANTC	3 cut(s)	55, 1100, 1469
HphI	GGTGA	1 cut(s)	1084
Hpy166II	GTNNAC	4 cut(s)	667, 712, 948, 1092
Hpy188I	TCNGA	3 cut(s)	891, 1105, 1160
Hpy188III	TCNNGA	3 cut(s)	479, 829, 1448
Hpy8I	GTNNAC	4 cut(s)	667, 712, 948, 1092
HpyAV	CCTTC	1 cut(s)	611
HpyCH4III	ACNGT	4 cut(s)	349, 871, 1066, 1293
HpyF3I	CTNAG	2 cut(s)	447, 644
Kzo9I	GATC	7 cut(s)	18, 162, 627, 677, 825, 891, 1384
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	4 cut(s)	16, 305, 1220, 1408
Lsp1109I	GCAGC	2 cut(s)	575, 1340
MaeI	CTAG	3 cut(s)	179, 1206, 1464
MaeIII	GTNAC	1 cut(s)	1060
MalI	GATC	7 cut(s)	20, 164, 629, 679, 827, 893, 1386
MboI	GATC	7 cut(s)	18, 162, 627, 677, 825, 891, 1384
MfeI	CAATTG	3 cut(s)	378, 1005, 1378
MflI	RGATCY	1 cut(s)	1384
MhlI	GDGCHC	2 cut(s)	1158, 1413
MlsI	TGGCCA	2 cut(s)	426, 779
MluNI	TGGCCA	2 cut(s)	426, 779
MlyI	GAGTC	2 cut(s)	1094, 1478
MmeI	TCCRAC	1 cut(s)	655
MnlI	CCTC	9 cut(s)	197, 442, 494, 558, 680, 870, 1062, 1188, 1298
Mox20I	TGGCCA	2 cut(s)	426, 779
Mph1103I	ATGCAT	1 cut(s)	104
MscI	TGGCCA	2 cut(s)	426, 779
MseI	TTAA	3 cut(s)	365, 855, 932
MslI	CAYNNNNRTG	3 cut(s)	275, 388, 542
Msp20I	TGGCCA	2 cut(s)	426, 779
MspCI	CTTAAG	1 cut(s)	931
MunI	CAATTG	3 cut(s)	378, 1005, 1378
Mva1269I	GAATGC	2 cut(s)	1263, 1505
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	7 cut(s)	18, 162, 627, 677, 825, 891, 1384
NlaIV	GGNNCC	2 cut(s)	282, 307
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	1060
NsiI	ATGCAT	1 cut(s)	104
NspI	RCATGY	1 cut(s)	1090
NspV	TTCGAA	1 cut(s)	526
PagI	TCATGA	1 cut(s)	828
PceI	AGGCCT	2 cut(s)	330, 1014
PciSI	GCTCTTC	1 cut(s)	179
PctI	GAATGC	2 cut(s)	1263, 1505
PfeI	GAWTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	1142
PkrI	GCNGC	3 cut(s)	293, 565, 1330
PleI	GAGTC	2 cut(s)	1094, 1477
PpsI	GAGTC	2 cut(s)	1094, 1477
PshAI	GACNNNNGTC	1 cut(s)	662
Psp124BI	GAGCTC	2 cut(s)	1158, 1413
PspN4I	GGNNCC	2 cut(s)	282, 307
PspPI	GGNCC	1 cut(s)	1080
PstI	CTGCAG	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	1384
RsaI	GTAC	2 cut(s)	713, 1290
RsaNI	GTAC	2 cut(s)	712, 1289
RseI	CAYNNNNRTG	3 cut(s)	275, 388, 542
SacI	GAGCTC	2 cut(s)	1158, 1413
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	3 cut(s)	365, 855, 932
SatI	GCNGC	3 cut(s)	292, 564, 1329
Sau3AI	GATC	7 cut(s)	18, 162, 627, 677, 825, 891, 1384
Sau96I	GGNCC	1 cut(s)	1080
SchI	GAGTC	2 cut(s)	1094, 1478
SduI	GDGCHC	2 cut(s)	1158, 1413
SfcI	CTRYAG	2 cut(s)	338, 1176
SfuI	TTCGAA	1 cut(s)	526
SmiMI	CAYNNNNRTG	3 cut(s)	275, 388, 542
SmlI	CTYRAG	3 cut(s)	38, 861, 931
SmoI	CTYRAG	3 cut(s)	38, 861, 931
SseBI	AGGCCT	2 cut(s)	330, 1014
SsiI	CCGC	3 cut(s)	291, 648, 979
SspI	AATATT	1 cut(s)	1075
SspMI	CTAG	3 cut(s)	179, 1206, 1464
SstI	GAGCTC	2 cut(s)	1158, 1413
StuI	AGGCCT	2 cut(s)	330, 1014
StyI	CCWWGG	4 cut(s)	178, 270, 1333, 1404
TaaI	ACNGT	4 cut(s)	349, 871, 1066, 1293
TaqI	TCGA	2 cut(s)	526, 1455
TatI	WGTACW	2 cut(s)	711, 1288
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	3 cut(s)	365, 855, 932
Tru9I	TTAA	3 cut(s)	365, 855, 932
TseFI	GTSAC	1 cut(s)	1060
TseI	GCWGC	2 cut(s)	563, 1328
Tsp45I	GTSAC	1 cut(s)	1060
TspDTI	ATGAA	6 cut(s)	189, 416, 599, 785, 1018, 1470
TspGWI	ACGGA	1 cut(s)	318
Van91I	CCANNNNNTGG	1 cut(s)	1142
Vha464I	CTTAAG	1 cut(s)	931
XapI	RAATTY	5 cut(s)	314, 516, 772, 885, 1507
XceI	RCATGY	1 cut(s)	1090
XmaJI	CCTAGG	1 cut(s)	178
XspI	CTAG	3 cut(s)	179, 1206, 1464
Zsp2I	ATGCAT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.