Rmu_sc0009691.1_g000001

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009691.1
Physical Location & Seq
Reverse (-)
11214 .. 12872
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009691.1_g000001.1.cds

Sequence Viewer

Length: 1659 bp
atgacatctcctcctctctgctgctcatgcaatggcaattcagactatgtgtcaaactcagaagactctaaaccccttctcaccaccccattcatctccaaaaccacagctcatcccagaaaggaacaaaaaccccagaaatcccatctctccttggctctgaaagaagcaaaatccatagctagtattgctttccctatgattcttaccggccttttactctattcccggtccatgatctccatgctcttcctcggccgcctcggtgacctggccttagccggcggctccttggccgttggctttgccaacatcaccggatactccatcttatccggtctcgccatgggaatggaacccatttgcggccaagcttttggtgccaaaaaacatactctgctcggcctctgtttgcaaagaacagttcttctccttgtacttacctccatacccatttcaattctctggctcaacatgaagaaactcctaatcctttgcggccaagacgaggctatttccattgaagcccaatcatacctcctctgttcacttcccgatcttcttgctcagtctctgttacaccctttgagaatttacttaagatctcaatccatcactctgcctctgacattctgcgcaactctggcaatcatccttcacattcccatcaactgctttctggtttcgcacctaaatttgggaatccaaggtgttgccttaagcggcgtttggtcgaatttcaatctcgtaatttctttgatactctacatcattatctccggcgtgtacaagaaaacttggggaggtatttccatggagtgtttccgagaatggaagactcttctcaatttggccataccaagctgcatttctgtttgccttgaatggtggtggtacgagatcatgatcttgctctgcggtttgttactgaacccaagagcaacagttgcatcaatgggggttttaatccagaccacttctttaatctacatcttcccttcctctctgagcttcagtgtgtccacacgtgttgggaacgaaaccggagcaaacaacccgaaaaaggcaaagcttgcggccattgtggggctttgttgcagcttcattctaggcctaacagctctcatctttgcagtgatggtaaggaacatatgggccagcatgttcactcaagacaaggaaatcatagccctcacatcgttggtcctgcccataattgggctctgcgagctgggaaactgccctcagacaacaggctgcggcgtgctgagaggcacggcgcggccgaaagttggggccaacataaacctggggtgcttttatattgtgggaatgccggtggcggtggggttggggttctttgccggattagacttcatgggactatggctcggacttttggcggcgcagggttcctgtgctgtgaccatgttggtggttttgggtgttacagattggaagtttgaagcccagaaagccaaacagttgacaggagctgctggagttgtggatgacagcgcagaggttaaggcagacaagacagacaaagctgaaatcaagggagaagaagattgtttatttttattaggtgatgaattagatttcgctaatgataatgacaataataagagtagtaataatagtgattcaaatgtttag
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

552

Amino Acids

59.35

Weight (kDa)

7.73

Isoelectric Point (pI)

32.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 637
AccB1I GGYRCC 1 cut(s) 380
AccII CGCG 1 cut(s) 1282
AcoI YGGCCR 7 cut(s) 256, 294, 367, 499, 852, 1077, 1283
AcsI RAATTY 3 cut(s) 591, 694, 736
AcuI CTGAAG 1 cut(s) 997
AcvI CACGTG 1 cut(s) 1028
AfaI GTAC 3 cut(s) 438, 788, 896
AfiI CCNNNNNNNGG 8 cut(s) 365, 508, 697, 1063, 1086, 1217, 1218, 1292
AflII CTTAAG 2 cut(s) 598, 718
AflIII ACRYGT 2 cut(s) 1025, 1027
AgsI TTSAA 6 cut(s) 459, 524, 742, 884, 1466, 1650
AhdI GACNNNNNGTC 1 cut(s) 49
AjnI CCWGG 2 cut(s) 270, 1308
AjuI GAANNNNNNNTTGG 2 cut(s) 853, 885
Alw26I GTCTC 2 cut(s) 344, 576
AlwNI CAGNNNCTG 2 cut(s) 574, 1496
ApeKI GCWGC 5 cut(s) 21, 864, 1098, 1257, 1496
ApoI RAATTY 3 cut(s) 591, 694, 736
AspLEI GCGC 4 cut(s) 638, 1282, 1408, 1520
AspS9I GGNCC 4 cut(s) 231, 1155, 1204, 1296
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 4 cut(s) 73, 278, 307, 1601
AvaII GGWCC 2 cut(s) 231, 1204
BalI TGGCCA 1 cut(s) 854
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 1224
BbrPI CACGTG 1 cut(s) 1028
BbsI GAAGAC 2 cut(s) 69, 842
BbvI GCAGC 5 cut(s) 8, 851, 1110, 1244, 1483
BccI CCATC 5 cut(s) 153, 335, 620, 674, 1132
BceAI ACGGC 2 cut(s) 281, 1293
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciT130I CCWGG 2 cut(s) 272, 1310
BciVI GTATCC 1 cut(s) 314
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 344, 576
BfaI CTAG 2 cut(s) 183, 1109
BfrI CTTAAG 2 cut(s) 598, 718
BfuI GTATCC 1 cut(s) 314
BglII AGATCT 1 cut(s) 602
Bme1390I CCNGG 3 cut(s) 229, 272, 1310
Bme18I GGWCC 2 cut(s) 231, 1204
BmeRI GACNNNNNGTC 1 cut(s) 49
BmgT120I GGNCC 4 cut(s) 231, 1155, 1204, 1296
BmiI GGNNCC 5 cut(s) 289, 357, 382, 1297, 1414
BmrFI CCNGG 3 cut(s) 229, 272, 1310
BmsI GCATC 1 cut(s) 959
BpiI GAAGAC 2 cut(s) 69, 842
BpmI CTGGAG 1 cut(s) 1521
Bpu10I CCTNAGC 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 1155
BpuMI CCSGG 1 cut(s) 229
BsaAI YACGTR 1 cut(s) 1028
BsaBI GATNNNNATC 2 cut(s) 607, 905
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 8 cut(s) 153, 253, 262, 291, 345, 706, 813, 1309
BsaWI WCCGGW 3 cut(s) 317, 335, 1043
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 8 cut(s) 365, 508, 697, 1063, 1086, 1217, 1218, 1292
Bse118I RCCGGY 3 cut(s) 209, 281, 1336
Bse3DI GCAATG 1 cut(s) 37
Bse8I GATNNNNATC 2 cut(s) 607, 905
BseBI CCWGG 2 cut(s) 272, 1310
BseDI CCNNGG 8 cut(s) 153, 253, 262, 291, 345, 706, 813, 1309
BseGI GGATG 3 cut(s) 112, 651, 1516
BseJI GATNNNNATC 2 cut(s) 607, 905
BseLI CCNNNNNNNGG 8 cut(s) 365, 508, 697, 1063, 1086, 1217, 1218, 1292
BseMI GCAATG 1 cut(s) 37
BseMII CTCAG 5 cut(s) 72, 581, 998, 1259, 1259
BseRI GAGGAG 1 cut(s) 530
BseX3I CGGCCG 2 cut(s) 256, 1283
BseXI GCAGC 5 cut(s) 8, 851, 1110, 1244, 1483
BseYI CCCAGC 1 cut(s) 1231
Bsh1236I CGCG 1 cut(s) 1282
Bsh1285I CGRYCG 2 cut(s) 259, 1286
BshNI GGYRCC 1 cut(s) 380
BsiEI CGRYCG 2 cut(s) 259, 1286
BsiSI CCGG 9 cut(s) 210, 229, 282, 318, 336, 780, 1044, 1337, 1365
BslFI GGGAC 1 cut(s) 1395
BslI CCNNNNNNNGG 8 cut(s) 365, 508, 697, 1063, 1086, 1217, 1218, 1292
BsmAI GTCTC 2 cut(s) 344, 576
BsmFI GGGAC 1 cut(s) 1395
BsmI GAATGC 1 cut(s) 1338
Bso31I GGTCTC 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 1224
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 5 cut(s) 237, 556, 602, 900, 906
Bsp19I CCATGG 2 cut(s) 345, 813
BspCNI CTCAG 5 cut(s) 71, 580, 999, 1258, 1260
BspFNI CGCG 1 cut(s) 1282
BspHI TCATGA 1 cut(s) 903
BspLI GGNNCC 5 cut(s) 289, 357, 382, 1297, 1414
BspQI GCTCTTC 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 380
BspTI CTTAAG 2 cut(s) 598, 718
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 37
BsrFI RCCGGY 3 cut(s) 209, 281, 1336
BsrGI TGTACA 1 cut(s) 786
BssAI RCCGGY 3 cut(s) 209, 281, 1336
BssECI CCNNGG 8 cut(s) 153, 253, 262, 291, 345, 706, 813, 1309
BssMI GATC 5 cut(s) 237, 556, 602, 900, 906
BssT1I CCWWGG 5 cut(s) 153, 291, 345, 706, 813
Bst2UI CCWGG 2 cut(s) 272, 1310
Bst4CI ACNGT 3 cut(s) 424, 946, 1485
Bst6I CTCTTC 2 cut(s) 254, 846
BstAFI CTTAAG 2 cut(s) 598, 718
BstAPI GCANNNNNTGC 2 cut(s) 947, 1073
BstAUI TGTACA 1 cut(s) 786
BstBAI YACGTR 1 cut(s) 1028
BstC8I GCNNGC 5 cut(s) 283, 1074, 1159, 1229, 1265
BstDEI CTNAG 6 cut(s) 58, 277, 567, 1007, 1245, 1268
BstDSI CCRYGG 2 cut(s) 345, 813
BstEII GGTNACC 1 cut(s) 266
BstF5I GGATG 3 cut(s) 112, 651, 1516
BstFNI CGCG 1 cut(s) 1282
BstHHI GCGC 4 cut(s) 638, 1282, 1408, 1520
BstKTI GATC 5 cut(s) 240, 559, 605, 903, 909
BstMAI GTCTC 2 cut(s) 344, 576
BstMBI GATC 5 cut(s) 237, 556, 602, 900, 906
BstMCI CGRYCG 2 cut(s) 259, 1286
BstMWI GCNNNNNNNGC 8 cut(s) 27, 188, 380, 644, 947, 1073, 1228, 1475
BstNI CCWGG 2 cut(s) 272, 1310
BstNSI RCATGY 1 cut(s) 1165
BstPI GGTNACC 1 cut(s) 266
BstSCI CCNGG 3 cut(s) 227, 270, 1308
BstUI CGCG 1 cut(s) 1282
BstV1I GCAGC 5 cut(s) 8, 851, 1110, 1244, 1483
BstV2I GAAGAC 2 cut(s) 69, 842
BstX2I RGATCY 1 cut(s) 602
BstXI CCANNNNNNTGG 3 cut(s) 352, 377, 1435
BstYI RGATCY 1 cut(s) 602
BstZI CGGCCG 2 cut(s) 256, 1283
BsuI GTATCC 1 cut(s) 314
BtgI CCRYGG 2 cut(s) 345, 813
BtsCI GGATG 3 cut(s) 112, 651, 1516
BtsI GCAGTG 1 cut(s) 1140
BtsIMutI CAGTG 2 cut(s) 1021, 1140
Cac8I GCNNGC 5 cut(s) 283, 1074, 1159, 1229, 1265
CaiI CAGNNNCTG 2 cut(s) 574, 1496
CciI TCATGA 1 cut(s) 903
CfoI GCGC 4 cut(s) 638, 1282, 1408, 1520
Cfr10I RCCGGY 3 cut(s) 209, 281, 1336
Cfr13I GGNCC 4 cut(s) 231, 1155, 1204, 1296
Csp6I GTAC 3 cut(s) 437, 787, 895
CspCI CAANNNNNGTGG 2 cut(s) 1012, 1047
CviQI GTAC 3 cut(s) 437, 787, 895
DdeI CTNAG 6 cut(s) 58, 277, 567, 1007, 1245, 1268
DpnI GATC 5 cut(s) 239, 558, 604, 902, 908
DpnII GATC 5 cut(s) 237, 556, 602, 900, 906
DriI GACNNNNNGTC 1 cut(s) 49
EaeI YGGCCR 7 cut(s) 256, 294, 367, 499, 852, 1077, 1283
EagI CGGCCG 2 cut(s) 256, 1283
Eam1104I CTCTTC 2 cut(s) 254, 846
Eam1105I GACNNNNNGTC 1 cut(s) 49
EarI CTCTTC 2 cut(s) 254, 846
EclXI CGGCCG 2 cut(s) 256, 1283
Eco130I CCWWGG 5 cut(s) 153, 291, 345, 706, 813
Eco147I AGGCCT 1 cut(s) 1113
Eco24I GRGCYC 1 cut(s) 1224
Eco31I GGTCTC 1 cut(s) 344
Eco47I GGWCC 2 cut(s) 231, 1204
Eco52I CGGCCG 2 cut(s) 256, 1283
Eco57I CTGAAG 1 cut(s) 997
Eco72I CACGTG 1 cut(s) 1028
Eco91I GGTNACC 1 cut(s) 266
EcoO65I GGTNACC 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 270, 1308
EcoT14I CCWWGG 5 cut(s) 153, 291, 345, 706, 813
EcoT38I GRGCYC 1 cut(s) 1224
ErhI CCWWGG 5 cut(s) 153, 291, 345, 706, 813
FaqI GGGAC 1 cut(s) 1395
FauNDI CATATG 1 cut(s) 1151
FokI GGATG 3 cut(s) 99, 638, 1523
FriOI GRGCYC 1 cut(s) 1224
FspBI CTAG 2 cut(s) 183, 1109
FspI TGCGCA 1 cut(s) 637
GlaI GCGC 4 cut(s) 637, 1281, 1407, 1519
GsaI CCCAGC 1 cut(s) 1235
GsuI CTGGAG 1 cut(s) 1521
HapII CCGG 9 cut(s) 210, 229, 282, 318, 336, 780, 1044, 1337, 1365
HhaI GCGC 4 cut(s) 638, 1282, 1408, 1520
Hin6I GCGC 4 cut(s) 636, 1280, 1406, 1518
HinP1I GCGC 4 cut(s) 636, 1280, 1406, 1518
HincII GTYRAC 1 cut(s) 1488
HindII GTYRAC 1 cut(s) 1488
HindIII AAGCTT 2 cut(s) 372, 1070
HinfI GANTC 5 cut(s) 65, 202, 702, 838, 1646
HpaII CCGG 9 cut(s) 210, 229, 282, 318, 336, 780, 1044, 1337, 1365
HphI GGTGA 4 cut(s) 73, 278, 307, 1601
Hpy166II GTNNAC 5 cut(s) 548, 787, 1023, 1167, 1488
Hpy188I TCNGA 8 cut(s) 43, 61, 162, 627, 827, 1008, 1248, 1394
Hpy188III TCNNGA 4 cut(s) 554, 904, 970, 1172
Hpy8I GTNNAC 5 cut(s) 548, 787, 1023, 1167, 1488
HpyAV CCTTC 3 cut(s) 86, 665, 1008
HpyCH4III ACNGT 3 cut(s) 424, 946, 1485
HpyCH4IV ACGT 1 cut(s) 1027
HpyCH4V TGCA 6 cut(s) 30, 415, 867, 950, 1098, 1133
HpyF10VI GCNNNNNNNGC 8 cut(s) 27, 188, 380, 644, 947, 1073, 1228, 1475
HpyF3I CTNAG 6 cut(s) 58, 277, 567, 1007, 1245, 1268
HpySE526I ACGT 1 cut(s) 1027
HspAI GCGC 4 cut(s) 636, 1280, 1406, 1518
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Kzo9I GATC 5 cut(s) 237, 556, 602, 900, 906
LguI GCTCTTC 1 cut(s) 254
LmnI GCTCC 3 cut(s) 293, 1046, 1493
Lsp1109I GCAGC 5 cut(s) 8, 851, 1110, 1244, 1483
LweI GCATC 1 cut(s) 959
MaeI CTAG 2 cut(s) 183, 1109
MaeII ACGT 1 cut(s) 1027
MaeIII GTNAC 5 cut(s) 266, 576, 924, 1423, 1447
MalI GATC 5 cut(s) 239, 558, 604, 902, 908
MboI GATC 5 cut(s) 237, 556, 602, 900, 906
MflI RGATCY 1 cut(s) 602
MhlI GDGCHC 1 cut(s) 1224
MlsI TGGCCA 1 cut(s) 854
MluCI AATT 9 cut(s) 37, 459, 591, 694, 736, 750, 847, 1215, 1595
MluNI TGGCCA 1 cut(s) 854
MlyI GAGTC 2 cut(s) 59, 832
Mox20I TGGCCA 1 cut(s) 854
MroNI GCCGGC 1 cut(s) 281
MscI TGGCCA 1 cut(s) 854
MseI TTAA 5 cut(s) 599, 719, 965, 983, 1527
MslI CAYNNNNRTG 2 cut(s) 350, 1433
Msp20I TGGCCA 1 cut(s) 854
MspCI CTTAAG 2 cut(s) 598, 718
MspI CCGG 9 cut(s) 210, 229, 282, 318, 336, 780, 1044, 1337, 1365
MspR9I CCNGG 3 cut(s) 229, 272, 1310
Mva1269I GAATGC 1 cut(s) 1338
MvaI CCWGG 2 cut(s) 272, 1310
MvnI CGCG 1 cut(s) 1282
MwoI GCNNNNNNNGC 8 cut(s) 27, 188, 380, 644, 947, 1073, 1228, 1475
NaeI GCCGGC 1 cut(s) 283
NciI CCSGG 1 cut(s) 229
NcoI CCATGG 2 cut(s) 345, 813
NdeI CATATG 1 cut(s) 1151
NdeII GATC 5 cut(s) 237, 556, 602, 900, 906
NgoMIV GCCGGC 1 cut(s) 281
NlaIV GGNNCC 5 cut(s) 289, 357, 382, 1297, 1414
NmeAIII GCCGAG 2 cut(s) 234, 381
NmuCI GTSAC 2 cut(s) 266, 1423
NsbI TGCGCA 1 cut(s) 637
NspI RCATGY 1 cut(s) 1165
PagI TCATGA 1 cut(s) 903
PceI AGGCCT 1 cut(s) 1113
PciSI GCTCTTC 1 cut(s) 254
PcsI WCGNNNNNNNCGW 1 cut(s) 1283
PctI GAATGC 1 cut(s) 1338
PdiI GCCGGC 1 cut(s) 283
PfeI GAWTC 3 cut(s) 202, 702, 1646
PleI GAGTC 2 cut(s) 59, 832
PmaCI CACGTG 1 cut(s) 1028
PmlI CACGTG 1 cut(s) 1028
PpsI GAGTC 2 cut(s) 59, 832
Ppu21I YACGTR 1 cut(s) 1028
Psp6I CCWGG 2 cut(s) 270, 1308
PspCI CACGTG 1 cut(s) 1028
PspEI GGTNACC 1 cut(s) 266
PspFI CCCAGC 1 cut(s) 1231
PspGI CCWGG 2 cut(s) 270, 1308
PspN4I GGNNCC 5 cut(s) 289, 357, 382, 1297, 1414
PspPI GGNCC 4 cut(s) 231, 1155, 1204, 1296
PstNI CAGNNNCTG 2 cut(s) 574, 1496
PsuI RGATCY 1 cut(s) 602
RsaI GTAC 3 cut(s) 438, 788, 896
RsaNI GTAC 3 cut(s) 437, 787, 895
RseI CAYNNNNRTG 2 cut(s) 350, 1433
SapI GCTCTTC 1 cut(s) 254
SaqAI TTAA 5 cut(s) 599, 719, 965, 983, 1527
Sau3AI GATC 5 cut(s) 237, 556, 602, 900, 906
Sau96I GGNCC 4 cut(s) 231, 1155, 1204, 1296
SchI GAGTC 2 cut(s) 59, 832
ScrFI CCNGG 3 cut(s) 229, 272, 1310
SduI GDGCHC 1 cut(s) 1224
SfaNI GCATC 1 cut(s) 959
SinI GGWCC 2 cut(s) 231, 1204
SmiMI CAYNNNNRTG 2 cut(s) 350, 1433
SmlI CTYRAG 3 cut(s) 598, 718, 1170
SmoI CTYRAG 3 cut(s) 598, 718, 1170
Sse9I AATT 9 cut(s) 37, 459, 591, 694, 736, 750, 847, 1215, 1595
SseBI AGGCCT 1 cut(s) 1113
SspMI CTAG 2 cut(s) 183, 1109
StuI AGGCCT 1 cut(s) 1113
StyD4I CCNGG 3 cut(s) 227, 270, 1308
StyI CCWWGG 5 cut(s) 153, 291, 345, 706, 813
TaaI ACNGT 3 cut(s) 424, 946, 1485
TaiI ACGT 1 cut(s) 1030
TaqI TCGA 1 cut(s) 734
TasI AATT 9 cut(s) 37, 459, 591, 694, 736, 750, 847, 1215, 1595
TatI WGTACW 2 cut(s) 436, 786
TauI GCSGC 9 cut(s) 261, 288, 369, 501, 726, 1079, 1263, 1285, 1406
TfiI GAWTC 3 cut(s) 202, 702, 1646
Tru1I TTAA 5 cut(s) 599, 719, 965, 983, 1527
Tru9I TTAA 5 cut(s) 599, 719, 965, 983, 1527
TscAI CASTG 2 cut(s) 1021, 1140
TseFI GTSAC 2 cut(s) 266, 1423
TseI GCWGC 5 cut(s) 21, 864, 1098, 1257, 1496
Tsp45I GTSAC 2 cut(s) 266, 1423
TspDTI ATGAA 5 cut(s) 82, 491, 1093, 1366, 1608
TspRI CASTG 2 cut(s) 1021, 1140
Vha464I CTTAAG 2 cut(s) 598, 718
VpaK11BI GGWCC 2 cut(s) 231, 1204
XapI RAATTY 3 cut(s) 591, 694, 736
XceI RCATGY 1 cut(s) 1165
XcmI CCANNNNNNNNNTGG 1 cut(s) 1306
XspI CTAG 2 cut(s) 183, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.