Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002987

Physical Location & Seq

Genomic Coordinates Forward (+)

10168778 .. 10170572

Gene Structure 1795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G091200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGACCAGTTAGCTCCTTTGAACCCTGAAAGCCCAAAACTTGAGCAAGAAAACCAGAAAACCCATCTGTCTCTGGCTCTCATAGAAGCCAAATGCATAGCCAACATAGCTTTTCCAATGGTTTTAACAGGCCTGTTGCTCTACTCACGCACAATGATCTCCATGCTCTTCCTTGGCCGCCTTGGAGAGCTTGCCTTGGCTGGTGGTTCGCTTGCTATTGGCTTCGCCAACATCACAGGGTACTCTGTTCTCTCTGGCCTTGCCATGGGCATGGAACCCATCTGCGGCCAAGCTTATGGAGCCAAAAGATTCAAACTTTTAGGCCTCACTCTGCAGAGAACTGTGATTTTGCTTCTCTTAACTTCAATACCCATTGCACTTTTGTGGTTCAACATGAAGAGAATTTTGCTTTCTTGTGGCCAGCAAGATGATATTGCTACTCAAGCCAAATCTTACATTTTTTATTCTCTTCCTGATCTCATTGCTCAAAGCCTTTTGCACCCTCTGCGGATTTATCTGCGAAGCCAATCCATAACTGTGCCTCTCACATTCTGTGCAACTCTGGCTATTCTTCTCCACATTCCCATCAATTACCTTCTTGTTTGTGTTCTCAATCTCGGAATCAAAGGCGTTGCGCTAAGCGGGGTTTGGAGTAATGTCAATCTCGTAGGATCTTTGATTTTTTACATTGCAATCTCAGGTGTATACAAGAAAACTTGGGGTGGTTTCTCCAAAGAGTGCTTCAAAGGGTGGAAAAGTCTCATGAATTTGGCAATTCCAAGCTGCATTTCAGTTTGTTTAGAATGGTGGTGGTATGAGATCATGATTTTGCTATGTGGGTTGTTACTTAACCCTCAAGCAACAGTTGCTTCAATGGGAATCTTGATTCAAACCACAGGTTTGATATACATTTTCCCATCTTCTTTAAGCTTTGGTGTATCAACAAGGGTCGGAAATGAACTTGGTGCAAACCGTCCCGAAAGAGCAAAACTTGCAACAATTGTGGGCCTATCTTATAGCTTTATCCTGGGATTTTCAGCATTGCTGTTTGCTGTGACTGTGAGGAACATTTGGGCAAGCATGTACACCCAAGACTCAGAAATTATTACATTGACATCAATGGTGTTGCCAATTATTGGCCTGTGTGAGCTTGGGAACTGTCCACAAACAACAGGTTGTGGTGTTCTGAGGGGAGCTGCTAGGCCTAAGCTGGGTGCAAATATAAATTTGGGTTGCTTTTATCTTGTGGGAATGCCTGTTGCTGTGTGGTTGGGTTTTTTTGCAGGGTTTGATTTTAGAGGACTGTGGCTTGGTCTTTTGGCAGCTCAGGGCTCATGTGTTGTGACCATGTTGTTTGTTTTGGCTAGAACCAATTGGGAACTTCAAGCCCAGAGAGCCAAGGAGCTAACAGGAACTTTCACTATTGATGATCAAGACGATCAAGATGCTGCTGATGAAGCTTATGAGTCTTTGAGTTCATTACAAAAGGCCAAATGTGACAATTCACTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

505

Amino Acids

54.88

Weight (kDa)

8.29

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23030 AT5G52050
fragaria_vesca	FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_7g29000
malus_domestica	MD01G1196800.v1.1 MD04G1067600.v1.1 MD06G1072600.v1.1 MD07G1264100.v1.1
prunus_persica	Prupe.2G290200_v2.0.a1 Prupe.5G091200_v2.0.a1
pyrus_communis	pycom06g07200 pycom06g07210 pycom07g24280
rosa_chinensis	RchiOBHm_Chr1g0376711 RchiOBHm_Chr7g0199211
rosa_laevigata	RLG00000003806 RLG00000026577
rosa_multiflora	Rmu_sc0000950.1_g000021 Rmu_sc0006266.1_g000073 Rmu_sc0009691.1_g000001 Rmu_sc0017062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281860
rosa_rugosa	Rorug01G0397700.1 Rorug07G0053400
rosa_samantha	Rh1AG414800 Rh1BG374200 Rh1CG388100 Rh1DG405000 Rh7AG177100 Rh7BG180600 Rh7CG186300 Rh7DG180300
rosa_wichuraiana	Rw1G036380 Rw7G015590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1136
AccI	GTMKAC	1 cut(s)	705
AciI	CCGC	4 cut(s)	178, 285, 508, 642
AclWI	GGATC	1 cut(s)	679
AcoI	YGGCCR	3 cut(s)	175, 286, 418
AcsI	RAATTY	3 cut(s)	402, 766, 1225
AfaI	GTAC	2 cut(s)	242, 1085
AfiI	CCNNNNNNNGG	4 cut(s)	265, 284, 1136, 1211
AgsI	TTSAA	8 cut(s)	22, 313, 366, 391, 745, 873, 890, 1385
AhlI	ACTAGT	1 cut(s)	1507
AjnI	CCWGG	1 cut(s)	1026
AjuI	GAANNNNNNNTTGG	4 cut(s)	725, 757, 772, 804
AleI	CACNNNNGTG	1 cut(s)	382
Alw26I	GTCTC	2 cut(s)	75, 764
AlwI	GGATC	1 cut(s)	679
ApeKI	GCWGC	4 cut(s)	783, 1196, 1322, 1448
ApoI	RAATTY	3 cut(s)	402, 766, 1225
AspLEI	GCGC	1 cut(s)	637
AspS9I	GGNCC	2 cut(s)	4, 1006
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	420
BanII	GRGCYC	1 cut(s)	1334
BbvI	GCAGC	4 cut(s)	770, 1183, 1334, 1435
BccI	CCATC	4 cut(s)	72, 287, 593, 925
BcgI	CGANNNNNNTGC	2 cut(s)	1427, 1461
BciT130I	CCWGG	1 cut(s)	1028
BclI	TGATCA	1 cut(s)	1429
BcoDI	GTCTC	2 cut(s)	75, 764
BcuI	ACTAGT	1 cut(s)	1507
BfaI	CTAG	3 cut(s)	1200, 1365, 1508
BfmI	CTRYAG	1 cut(s)	332
BisI	GCNGC	6 cut(s)	178, 286, 784, 1197, 1323, 1449
BlpI	GCTNAGC	1 cut(s)	638
BlsI	GCNGC	6 cut(s)	179, 287, 785, 1198, 1324, 1450
Bme1390I	CCNGG	1 cut(s)	1028
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 1006
BmiI	GGNNCC	2 cut(s)	276, 301
BmrFI	CCNGG	1 cut(s)	1028
BmsI	GCATC	1 cut(s)	1435
Bpu10I	CCTNAGC	2 cut(s)	1206, 1326
Bpu1102I	GCTNAGC	1 cut(s)	638
BpuEI	CTTGAG	3 cut(s)	62, 426, 840
BsaJI	CCNNGG	6 cut(s)	172, 181, 195, 264, 1027, 1398
Bsc4I	CCNNNNNNNGG	4 cut(s)	265, 284, 1136, 1211
Bse1I	ACTGG	1 cut(s)	7
Bse3DI	GCAATG	4 cut(s)	372, 480, 687, 1040
BseBI	CCWGG	1 cut(s)	1028
BseDI	CCNNGG	6 cut(s)	172, 181, 195, 264, 1027, 1398
BseLI	CCNNNNNNNGG	4 cut(s)	265, 284, 1136, 1211
BseMI	GCAATG	4 cut(s)	372, 480, 687, 1040
BseMII	CTCAG	4 cut(s)	711, 1110, 1178, 1340
BseNI	ACTGG	1 cut(s)	7
BseXI	GCAGC	4 cut(s)	770, 1183, 1334, 1435
BseYI	CCCAGC	1 cut(s)	1210
BslFI	GGGAC	1 cut(s)	960
BslI	CCNNNNNNNGG	4 cut(s)	265, 284, 1136, 1211
BsmAI	GTCTC	2 cut(s)	75, 764
BsmFI	GGGAC	1 cut(s)	960
BsmI	GAATGC	1 cut(s)	1257
Bsp1286I	GDGCHC	1 cut(s)	1334
Bsp1407I	TGTACA	1 cut(s)	1083
Bsp143I	GATC	6 cut(s)	156, 475, 671, 819, 1429, 1438
Bsp1720I	GCTNAGC	1 cut(s)	638
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	4 cut(s)	178, 285, 508, 642
BspCNI	CTCAG	4 cut(s)	710, 1109, 1179, 1339
BspHI	TCATGA	2 cut(s)	762, 822
BspLI	GGNNCC	2 cut(s)	276, 301
BspMAI	CTGCAG	1 cut(s)	336
BspPI	GGATC	1 cut(s)	679
BspQI	GCTCTTC	1 cut(s)	173
BsrDI	GCAATG	4 cut(s)	372, 480, 687, 1040
BsrGI	TGTACA	1 cut(s)	1083
BsrI	ACTGG	1 cut(s)	7
BssECI	CCNNGG	6 cut(s)	172, 181, 195, 264, 1027, 1398
BssMI	GATC	6 cut(s)	156, 475, 671, 819, 1429, 1438
BssNAI	GTATAC	1 cut(s)	706
BssT1I	CCWWGG	5 cut(s)	172, 181, 195, 264, 1398
Bst1107I	GTATAC	1 cut(s)	706
Bst2UI	CCWGG	1 cut(s)	1028
Bst4CI	ACNGT	7 cut(s)	343, 538, 865, 974, 1060, 1160, 1305
Bst6I	CTCTTC	3 cut(s)	173, 392, 474
BstAPI	GCANNNNNTGC	3 cut(s)	505, 866, 992
BstAUI	TGTACA	1 cut(s)	1083
BstC8I	GCNNGC	4 cut(s)	192, 213, 422, 1078
BstDEI	CTNAG	6 cut(s)	638, 697, 1096, 1187, 1206, 1326
BstDSI	CCRYGG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	637
BstKTI	GATC	6 cut(s)	159, 478, 674, 822, 1432, 1441
BstMAI	GTCTC	2 cut(s)	75, 764
BstMBI	GATC	6 cut(s)	156, 475, 671, 819, 1429, 1438
BstMWI	GCNNNNNNNGC	9 cut(s)	107, 299, 443, 505, 563, 866, 992, 1394, 1457
BstNI	CCWGG	1 cut(s)	1028
BstNSI	RCATGY	1 cut(s)	1084
BstSCI	CCNGG	1 cut(s)	1026
BstSFI	CTRYAG	1 cut(s)	332
BstV1I	GCAGC	4 cut(s)	770, 1183, 1334, 1435
BstX2I	RGATCY	1 cut(s)	671
BstXI	CCANNNNNNTGG	2 cut(s)	271, 296
BstYI	RGATCY	1 cut(s)	671
BstZ17I	GTATAC	1 cut(s)	706
BtgI	CCRYGG	1 cut(s)	264
Cac8I	GCNNGC	4 cut(s)	192, 213, 422, 1078
CciI	TCATGA	2 cut(s)	762, 822
CfoI	GCGC	1 cut(s)	637
Cfr13I	GGNCC	2 cut(s)	4, 1006
Csp6I	GTAC	2 cut(s)	241, 1084
CspCI	CAANNNNNGTGG	2 cut(s)	984, 1019
CviAII	CATG	9 cut(s)	163, 265, 271, 394, 763, 823, 1081, 1335, 1348
CviQI	GTAC	2 cut(s)	241, 1084
DdeI	CTNAG	6 cut(s)	638, 697, 1096, 1187, 1206, 1326
DpnI	GATC	6 cut(s)	158, 477, 673, 821, 1431, 1440
DpnII	GATC	6 cut(s)	156, 475, 671, 819, 1429, 1438
EaeI	YGGCCR	3 cut(s)	175, 286, 418
Eam1104I	CTCTTC	3 cut(s)	173, 392, 474
EarI	CTCTTC	3 cut(s)	173, 392, 474
Eco130I	CCWWGG	5 cut(s)	172, 181, 195, 264, 1398
Eco147I	AGGCCT	3 cut(s)	132, 324, 1204
Eco24I	GRGCYC	1 cut(s)	1334
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	1026
EcoT14I	CCWWGG	5 cut(s)	172, 181, 195, 264, 1398
EcoT22I	ATGCAT	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	1334
ErhI	CCWWGG	5 cut(s)	172, 181, 195, 264, 1398
FaeI	CATG	9 cut(s)	166, 268, 274, 397, 766, 826, 1084, 1338, 1351
FaqI	GGGAC	1 cut(s)	960
FatI	CATG	9 cut(s)	162, 264, 270, 393, 762, 822, 1080, 1334, 1347
FauI	CCCGC	1 cut(s)	635
FbaI	TGATCA	1 cut(s)	1429
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	6 cut(s)	178, 286, 784, 1197, 1323, 1449
FriOI	GRGCYC	1 cut(s)	1334
Fsp4HI	GCNGC	6 cut(s)	178, 286, 784, 1197, 1323, 1449
FspBI	CTAG	3 cut(s)	1200, 1365, 1508
GlaI	GCGC	1 cut(s)	636
GluI	GCNGC	6 cut(s)	178, 286, 784, 1197, 1323, 1449
GsaI	CCCAGC	1 cut(s)	1214
HhaI	GCGC	1 cut(s)	637
Hin1II	CATG	9 cut(s)	166, 268, 274, 397, 766, 826, 1084, 1338, 1351
Hin6I	GCGC	1 cut(s)	635
HinP1I	GCGC	1 cut(s)	635
HindIII	AAGCTT	3 cut(s)	291, 928, 1458
HinfI	GANTC	6 cut(s)	309, 621, 879, 886, 1094, 1466
Hpy166II	GTNNAC	3 cut(s)	706, 1086, 1163
Hpy188I	TCNGA	4 cut(s)	620, 953, 1099, 1188
Hpy188III	TCNNGA	7 cut(s)	473, 763, 823, 883, 977, 1433, 1442
Hpy8I	GTNNAC	3 cut(s)	706, 1086, 1163
HpyAV	CCTTC	1 cut(s)	605
HpyCH4III	ACNGT	7 cut(s)	343, 538, 865, 974, 1060, 1160, 1305
HpyF10VI	GCNNNNNNNGC	9 cut(s)	107, 299, 443, 505, 563, 866, 992, 1394, 1457
HpyF3I	CTNAG	6 cut(s)	638, 697, 1096, 1187, 1206, 1326
Hsp92II	CATG	9 cut(s)	166, 268, 274, 397, 766, 826, 1084, 1338, 1351
HspAI	GCGC	1 cut(s)	635
Ksp22I	TGATCA	1 cut(s)	1429
Kzo9I	GATC	6 cut(s)	156, 475, 671, 819, 1429, 1438
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	4 cut(s)	19, 299, 1193, 1402
Lsp1109I	GCAGC	4 cut(s)	770, 1183, 1334, 1435
LweI	GCATC	1 cut(s)	1435
MaeI	CTAG	3 cut(s)	1200, 1365, 1508
MaeIII	GTNAC	4 cut(s)	843, 1054, 1342, 1496
MalI	GATC	6 cut(s)	158, 477, 673, 821, 1431, 1440
MboI	GATC	6 cut(s)	156, 475, 671, 819, 1429, 1438
MboII	GAAGA	5 cut(s)	160, 409, 461, 563, 912
MfeI	CAATTG	2 cut(s)	999, 1372
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	1 cut(s)	1334
MlsI	TGGCCA	1 cut(s)	420
MluNI	TGGCCA	1 cut(s)	420
MlyI	GAGTC	2 cut(s)	1088, 1475
MmeI	TCCRAC	1 cut(s)	931
MnlI	CCTC	7 cut(s)	335, 513, 552, 864, 1056, 1182, 1292
Mox20I	TGGCCA	1 cut(s)	420
Mph1103I	ATGCAT	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	420
MseI	TTAA	4 cut(s)	125, 359, 849, 926
MslI	CAYNNNNRTG	4 cut(s)	269, 382, 536, 1510
Msp20I	TGGCCA	1 cut(s)	420
MspR9I	CCNGG	1 cut(s)	1028
MunI	CAATTG	2 cut(s)	999, 1372
Mva1269I	GAATGC	1 cut(s)	1257
MvaI	CCWGG	1 cut(s)	1028
MwoI	GCNNNNNNNGC	9 cut(s)	107, 299, 443, 505, 563, 866, 992, 1394, 1457
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	6 cut(s)	156, 475, 671, 819, 1429, 1438
NlaIII	CATG	9 cut(s)	166, 268, 274, 397, 766, 826, 1084, 1338, 1351
NlaIV	GGNNCC	2 cut(s)	276, 301
NmuCI	GTSAC	3 cut(s)	1054, 1342, 1496
NsiI	ATGCAT	1 cut(s)	98
NspI	RCATGY	1 cut(s)	1084
OliI	CACNNNNGTG	1 cut(s)	382
PagI	TCATGA	2 cut(s)	762, 822
PceI	AGGCCT	3 cut(s)	132, 324, 1204
PciSI	GCTCTTC	1 cut(s)	173
PctI	GAATGC	1 cut(s)	1257
PfeI	GAWTC	4 cut(s)	309, 621, 879, 886
PflMI	CCANNNNNTGG	1 cut(s)	1136
PkrI	GCNGC	6 cut(s)	179, 287, 785, 1198, 1324, 1450
PleI	GAGTC	2 cut(s)	1088, 1474
PpsI	GAGTC	2 cut(s)	1088, 1474
Psp6I	CCWGG	1 cut(s)	1026
PspFI	CCCAGC	1 cut(s)	1210
PspGI	CCWGG	1 cut(s)	1026
PspN4I	GGNNCC	2 cut(s)	276, 301
PspPI	GGNCC	2 cut(s)	4, 1006
PstI	CTGCAG	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	671
RsaI	GTAC	2 cut(s)	242, 1085
RsaNI	GTAC	2 cut(s)	241, 1084
RseI	CAYNNNNRTG	4 cut(s)	269, 382, 536, 1510
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	4 cut(s)	125, 359, 849, 926
SatI	GCNGC	6 cut(s)	178, 286, 784, 1197, 1323, 1449
Sau3AI	GATC	6 cut(s)	156, 475, 671, 819, 1429, 1438
Sau96I	GGNCC	2 cut(s)	4, 1006
SchI	GAGTC	2 cut(s)	1088, 1475
ScrFI	CCNGG	1 cut(s)	1028
SduI	GDGCHC	1 cut(s)	1334
SfaNI	GCATC	1 cut(s)	1435
SfcI	CTRYAG	1 cut(s)	332
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	4 cut(s)	269, 382, 536, 1510
SmlI	CTYRAG	3 cut(s)	41, 441, 855
SmoI	CTYRAG	3 cut(s)	41, 441, 855
SpeI	ACTAGT	1 cut(s)	1507
SseBI	AGGCCT	3 cut(s)	132, 324, 1204
SsiI	CCGC	4 cut(s)	178, 285, 508, 642
SspMI	CTAG	3 cut(s)	1200, 1365, 1508
StuI	AGGCCT	3 cut(s)	132, 324, 1204
StyD4I	CCNGG	1 cut(s)	1026
StyI	CCWWGG	5 cut(s)	172, 181, 195, 264, 1398
TaaI	ACNGT	7 cut(s)	343, 538, 865, 974, 1060, 1160, 1305
TatI	WGTACW	1 cut(s)	1083
TauI	GCSGC	2 cut(s)	180, 288
TfiI	GAWTC	4 cut(s)	309, 621, 879, 886
Tru1I	TTAA	4 cut(s)	125, 359, 849, 926
Tru9I	TTAA	4 cut(s)	125, 359, 849, 926
TseFI	GTSAC	3 cut(s)	1054, 1342, 1496
TseI	GCWGC	4 cut(s)	783, 1196, 1322, 1448
Tsp45I	GTSAC	3 cut(s)	1054, 1342, 1496
TspDTI	ATGAA	5 cut(s)	410, 779, 972, 1467, 1470
Van91I	CCANNNNNTGG	1 cut(s)	1136
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	3 cut(s)	402, 766, 1225
XceI	RCATGY	1 cut(s)	1084
XmiI	GTMKAC	1 cut(s)	705
XspI	CTAG	3 cut(s)	1200, 1365, 1508
Zsp2I	ATGCAT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.