Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002987

Physical Location & Seq

Genomic Coordinates Forward (+)

11725019 .. 11726519

Gene Structure 1501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g07200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGCCTTTTAATAAATTGAGTCATCACATTCACTTCTTTTGGTCCATTTGGAATTTGCAACTGAATGGTATCCCTGTTGAGCCTGCAGACGCCCCAACATTGTCATCAAGCTTTGGTCATAAAAAGACGCTTGAAACTCCCAAGAATTTCAGTTGGAACTTGCTCTGTATAATAAGCTCCAAAGTCTTTCTCTATTTCTTTTTCATTTTTTTCTTTTCCAGGATGGCCGTCCAAAACCCATACATCCTTCCGCACATACCCAATTCAGCAATCCCTCTCTCTCAAACAATGGACAAATTAGCTCCCTTGATCCCAGAAAGCCCAAAACTTGAGCAATACAACCAAAATCACCATAAAACCCACCTCTCTCTGGCTCTCATCGAAGCCAAATGCATAGCCAACATAGCTTTCCCAATGGTATTGACAGGTCTATTACTCTACTCTCGCTCAATGATCTCCATGCTCTTCCTAGGCCGCCTCGGCGAGCTTTCATTGGCGGGTGGCTCGCTTGCTATAGGCTTTGCCAACATCACAGGCTTTTCTGTTCTCTCTGGCCTTGCCATGGGGATGGAACCCATTTGCGGCCAAGCTTACGGGGCCAAAAGATTCAAACTTTTAGGCCAAACCCTGCAGAGAACAGTCATTCTTCTTTTCTTAACTTCAATCCCAATTGCGTTTCTGTGGTTAAACATGAAAAGAATTTTGCTTTCTTGTGGCCAACAAGATGAGATTGCAACTGAGGCTTATTCTTACATTCTGTACTCTCTTCCTGACCTCATTGCTCAAAGCCTTTTGCACCCCTTGCGAATTTATCTCCGAACTCAATCCATAACCGTGCCTCTCACATTCTGTGCAGCTTTGGCTATTCTTCTTCACATTCCCGTCAATTACCTTCTTGTTCATGTTCTCAATCTCGGGATCAAGGGCGTGGCGCTAAGCGGGGTTTGGACTAATGTCAACCTCGTAGGGTCATTGATTGCTTACATTGCAATCTCGGGTGTGTACAAGAAAACTTGGGGTGGTTTTTCCAAAGAGTGCTTCAAAGGGTGGAAGAATCTAATGAATTTGGCCATTCCAAGTTGTATCTCGGTTTGTTTAGAATGGTGGTGGTATGAGATCATGATTTTGCTATGTGGTTTGTTGCTTAACCCTCAAGCAACAGTTGCTTCAATGGGAATTCTGATCCAAACCACAGCTTTGATATACATTTTCCCATCTTCTTTAAGCTTTGGTGTGTCAACAAGGGTGGGAAATGAGCTTGGTGCTAACCGCCCAGAAAGAGCAAGACTTGCAACAATCGTAGGCCTATCTTATAGCTTCATATTGGGATTTTCAGCATTGTTGTTTGCCGTGACTGTGAGGAACATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

457

Amino Acids

50.6

Weight (kDa)

9.33

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23030 AT5G52050
fragaria_vesca	FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_7g29000
malus_domestica	MD01G1196800.v1.1 MD04G1067600.v1.1 MD06G1072600.v1.1 MD07G1264100.v1.1
prunus_persica	Prupe.2G290200_v2.0.a1 Prupe.5G091200_v2.0.a1
pyrus_communis	pycom06g07200 pycom06g07210 pycom07g24280
rosa_chinensis	RchiOBHm_Chr1g0376711 RchiOBHm_Chr7g0199211
rosa_laevigata	RLG00000003806 RLG00000026577
rosa_multiflora	Rmu_sc0000950.1_g000021 Rmu_sc0006266.1_g000073 Rmu_sc0009691.1_g000001 Rmu_sc0017062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281860
rosa_rugosa	Rorug01G0397700.1 Rorug07G0053400
rosa_samantha	Rh1AG414800 Rh1BG374200 Rh1CG388100 Rh1DG405000 Rh7AG177100 Rh7BG180600 Rh7CG186300 Rh7DG180300
rosa_wichuraiana	Rw1G036380 Rw7G015590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	251, 475, 497, 582, 939, 1270
AclWI	GGATC	3 cut(s)	304, 926, 1177
AcoI	YGGCCR	4 cut(s)	225, 583, 715, 1068
AcsI	RAATTY	6 cut(s)	52, 145, 699, 807, 1063, 1176
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	2 cut(s)	761, 1004
AfiI	CCNNNNNNNGG	3 cut(s)	370, 562, 581
AgsI	TTSAA	5 cut(s)	134, 610, 663, 1042, 1170
AjnI	CCWGG	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	4 cut(s)	392, 424, 1022, 1054
AlwI	GGATC	3 cut(s)	304, 926, 1177
Ama87I	CYCGRG	2 cut(s)	914, 994
AoxI	GGCC	9 cut(s)	225, 472, 553, 583, 597, 619, 715, 1068, 1303
ApeKI	GCWGC	1 cut(s)	854
ApoI	RAATTY	6 cut(s)	52, 145, 699, 807, 1063, 1176
AspA2I	CCTAGG	1 cut(s)	469
AspLEI	GCGC	1 cut(s)	934
AspS9I	GGNCC	2 cut(s)	42, 597
AsuHPI	GGTGA	1 cut(s)	341
AvaI	CYCGRG	2 cut(s)	914, 994
AvaII	GGWCC	1 cut(s)	42
AvrII	CCTAGG	1 cut(s)	469
BalI	TGGCCA	2 cut(s)	717, 1070
BbvI	GCAGC	1 cut(s)	866
BccI	CCATC	3 cut(s)	217, 562, 1222
BceAI	ACGGC	2 cut(s)	212, 1334
BciT130I	CCWGG	1 cut(s)	220
BciVI	GTATCC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	3 cut(s)	84, 513, 629
BfoI	RGCGCY	1 cut(s)	935
BfuI	GTATCC	1 cut(s)	80
BglI	GCCNNNNNGGC	1 cut(s)	480
BisI	GCNGC	3 cut(s)	475, 583, 855
BlnI	CCTAGG	1 cut(s)	469
BlpI	GCTNAGC	1 cut(s)	935
BlsI	GCNGC	3 cut(s)	476, 584, 856
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	42
BmeT110I	CYCGRG	2 cut(s)	914, 994
BmgT120I	GGNCC	2 cut(s)	42, 597
BmiI	GGNNCC	2 cut(s)	573, 598
BmrFI	CCNGG	1 cut(s)	220
BoxI	GACNNNNGTC	1 cut(s)	953
Bpu1102I	GCTNAGC	1 cut(s)	935
BpuEI	CTTGAG	2 cut(s)	350, 1137
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	469, 478, 561
Bsc4I	CCNNNNNNNGG	3 cut(s)	370, 562, 581
Bse3DI	GCAATG	2 cut(s)	777, 984
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	3 cut(s)	469, 478, 561
BseGI	GGATG	3 cut(s)	228, 243, 573
BseLI	CCNNNNNNNGG	3 cut(s)	370, 562, 581
BseMI	GCAATG	2 cut(s)	777, 984
BseMII	CTCAG	1 cut(s)	729
BseXI	GCAGC	1 cut(s)	866
BsgI	GTGCAG	1 cut(s)	873
BshFI	GGCC	9 cut(s)	227, 474, 555, 585, 599, 621, 717, 1070, 1305
BsiHKCI	CYCGRG	2 cut(s)	914, 994
BslI	CCNNNNNNNGG	3 cut(s)	370, 562, 581
BsnI	GGCC	9 cut(s)	227, 474, 555, 585, 599, 621, 717, 1070, 1305
BsoBI	CYCGRG	2 cut(s)	914, 994
Bsp1407I	TGTACA	1 cut(s)	1002
Bsp143I	GATC	5 cut(s)	309, 453, 918, 1116, 1182
Bsp1720I	GCTNAGC	1 cut(s)	935
Bsp19I	CCATGG	1 cut(s)	561
BspACI	CCGC	6 cut(s)	251, 475, 497, 582, 939, 1270
BspANI	GGCC	9 cut(s)	227, 474, 555, 585, 599, 621, 717, 1070, 1305
BspCNI	CTCAG	1 cut(s)	730
BspHI	TCATGA	1 cut(s)	1119
BspLI	GGNNCC	2 cut(s)	573, 598
BspMAI	CTGCAG	2 cut(s)	88, 633
BspPI	GGATC	3 cut(s)	304, 926, 1177
BspQI	GCTCTTC	1 cut(s)	470
BsrDI	GCAATG	2 cut(s)	777, 984
BsrGI	TGTACA	1 cut(s)	1002
BssECI	CCNNGG	3 cut(s)	469, 478, 561
BssMI	GATC	5 cut(s)	309, 453, 918, 1116, 1182
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	469, 561
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	4 cut(s)	640, 835, 1162, 1357
Bst6I	CTCTTC	2 cut(s)	470, 771
BstACI	GRCGYC	1 cut(s)	90
BstAPI	GCANNNNNTGC	3 cut(s)	802, 1163, 1289
BstAUI	TGTACA	1 cut(s)	1002
BstC8I	GCNNGC	4 cut(s)	84, 485, 506, 510
BstDEI	CTNAG	2 cut(s)	738, 935
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	3 cut(s)	228, 243, 573
BstH2I	RGCGCY	1 cut(s)	935
BstHHI	GCGC	1 cut(s)	934
BstKTI	GATC	5 cut(s)	312, 456, 921, 1119, 1185
BstMBI	GATC	5 cut(s)	309, 453, 918, 1116, 1182
BstMWI	GCNNNNNNNGC	9 cut(s)	404, 480, 596, 740, 802, 860, 986, 1163, 1289
BstNI	CCWGG	1 cut(s)	220
BstPAI	GACNNNNGTC	1 cut(s)	953
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	3 cut(s)	84, 513, 629
BstV1I	GCAGC	1 cut(s)	866
BstXI	CCANNNNNNTGG	1 cut(s)	568
BsuI	GTATCC	1 cut(s)	80
BsuRI	GGCC	9 cut(s)	227, 474, 555, 585, 599, 621, 717, 1070, 1305
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	3 cut(s)	228, 243, 573
Cac8I	GCNNGC	4 cut(s)	84, 485, 506, 510
CciI	TCATGA	1 cut(s)	1119
CfoI	GCGC	1 cut(s)	934
Cfr13I	GGNCC	2 cut(s)	42, 597
CseI	GACGC	2 cut(s)	98, 136
Csp6I	GTAC	2 cut(s)	760, 1003
CspCI	CAANNNNNGTGG	2 cut(s)	1227, 1262
CviAII	CATG	5 cut(s)	460, 562, 691, 902, 1120
CviQI	GTAC	2 cut(s)	760, 1003
DdeI	CTNAG	2 cut(s)	738, 935
DpnI	GATC	5 cut(s)	311, 455, 920, 1118, 1184
DpnII	GATC	5 cut(s)	309, 453, 918, 1116, 1182
EaeI	YGGCCR	4 cut(s)	225, 583, 715, 1068
Eam1104I	CTCTTC	2 cut(s)	470, 771
EarI	CTCTTC	2 cut(s)	470, 771
Eco130I	CCWWGG	2 cut(s)	469, 561
Eco147I	AGGCCT	1 cut(s)	1305
Eco47I	GGWCC	1 cut(s)	42
Eco88I	CYCGRG	2 cut(s)	914, 994
EcoRI	GAATTC	1 cut(s)	1176
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	2 cut(s)	469, 561
EcoT22I	ATGCAT	1 cut(s)	395
ErhI	CCWWGG	2 cut(s)	469, 561
FaeI	CATG	5 cut(s)	463, 565, 694, 905, 1123
FatI	CATG	5 cut(s)	459, 561, 690, 901, 1119
FauI	CCCGC	2 cut(s)	490, 932
Fnu4HI	GCNGC	3 cut(s)	475, 583, 855
FokI	GGATG	3 cut(s)	230, 235, 580
Fsp4HI	GCNGC	3 cut(s)	475, 583, 855
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	1 cut(s)	933
GluI	GCNGC	3 cut(s)	475, 583, 855
HaeII	RGCGCY	1 cut(s)	935
HaeIII	GGCC	9 cut(s)	227, 474, 555, 585, 599, 621, 717, 1070, 1305
HgaI	GACGC	2 cut(s)	98, 136
HhaI	GCGC	1 cut(s)	934
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	5 cut(s)	463, 565, 694, 905, 1123
Hin6I	GCGC	1 cut(s)	932
HinP1I	GCGC	1 cut(s)	932
HincII	GTYRAC	2 cut(s)	958, 1239
HindII	GTYRAC	2 cut(s)	958, 1239
HindIII	AAGCTT	3 cut(s)	109, 588, 1225
HinfI	GANTC	3 cut(s)	19, 606, 1054
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	3 cut(s)	958, 1003, 1239
Hpy188I	TCNGA	2 cut(s)	818, 1182
Hpy188III	TCNNGA	3 cut(s)	770, 916, 1120
Hpy8I	GTNNAC	3 cut(s)	958, 1003, 1239
HpyAV	CCTTC	2 cut(s)	257, 902
HpyCH4III	ACNGT	4 cut(s)	640, 835, 1162, 1357
HpyCH4V	TGCA	9 cut(s)	58, 86, 393, 631, 734, 796, 854, 989, 1292
HpyF10VI	GCNNNNNNNGC	9 cut(s)	404, 480, 596, 740, 802, 860, 986, 1163, 1289
HpyF3I	CTNAG	2 cut(s)	738, 935
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	5 cut(s)	463, 565, 694, 905, 1123
HspAI	GCGC	1 cut(s)	932
Kzo9I	GATC	5 cut(s)	309, 453, 918, 1116, 1182
LguI	GCTCTTC	1 cut(s)	470
LmnI	GCTCC	2 cut(s)	182, 307
Lsp1109I	GCAGC	1 cut(s)	866
MaeI	CTAG	1 cut(s)	470
MaeIII	GTNAC	1 cut(s)	1351
MalI	GATC	5 cut(s)	311, 455, 920, 1118, 1184
MboI	GATC	5 cut(s)	309, 453, 918, 1116, 1182
MboII	GAAGA	7 cut(s)	457, 638, 758, 860, 863, 1063, 1209
MfeI	CAATTG	1 cut(s)	669
MlsI	TGGCCA	2 cut(s)	717, 1070
MluNI	TGGCCA	2 cut(s)	717, 1070
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	9 cut(s)	285, 374, 488, 733, 785, 849, 971, 1161, 1353
Mox20I	TGGCCA	2 cut(s)	717, 1070
Mph1103I	ATGCAT	1 cut(s)	395
MscI	TGGCCA	2 cut(s)	717, 1070
MseI	TTAA	5 cut(s)	9, 656, 686, 1146, 1223
MslI	CAYNNNNRTG	2 cut(s)	566, 833
Msp20I	TGGCCA	2 cut(s)	717, 1070
MspR9I	CCNGG	1 cut(s)	220
MunI	CAATTG	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	9 cut(s)	404, 480, 596, 740, 802, 860, 986, 1163, 1289
NcoI	CCATGG	1 cut(s)	561
NdeII	GATC	5 cut(s)	309, 453, 918, 1116, 1182
NlaIII	CATG	5 cut(s)	463, 565, 694, 905, 1123
NlaIV	GGNNCC	2 cut(s)	573, 598
NmeAIII	GCCGAG	1 cut(s)	459
NmuCI	GTSAC	1 cut(s)	1351
NsiI	ATGCAT	1 cut(s)	395
PagI	TCATGA	1 cut(s)	1119
PceI	AGGCCT	1 cut(s)	1305
PciSI	GCTCTTC	1 cut(s)	470
PfeI	GAWTC	2 cut(s)	606, 1054
PfoI	TCCNGGA	1 cut(s)	218
PkrI	GCNGC	3 cut(s)	476, 584, 856
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PshAI	GACNNNNGTC	1 cut(s)	953
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	573, 598
PspPI	GGNCC	2 cut(s)	42, 597
PstI	CTGCAG	2 cut(s)	88, 633
RsaI	GTAC	2 cut(s)	761, 1004
RsaNI	GTAC	2 cut(s)	760, 1003
RseI	CAYNNNNRTG	2 cut(s)	566, 833
SapI	GCTCTTC	1 cut(s)	470
SaqAI	TTAA	5 cut(s)	9, 656, 686, 1146, 1223
SatI	GCNGC	3 cut(s)	475, 583, 855
Sau3AI	GATC	5 cut(s)	309, 453, 918, 1116, 1182
Sau96I	GGNCC	2 cut(s)	42, 597
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	220
SfcI	CTRYAG	3 cut(s)	84, 513, 629
SinI	GGWCC	1 cut(s)	42
SmiMI	CAYNNNNRTG	2 cut(s)	566, 833
SmlI	CTYRAG	2 cut(s)	329, 1152
SmoI	CTYRAG	2 cut(s)	329, 1152
SseBI	AGGCCT	1 cut(s)	1305
SsiI	CCGC	6 cut(s)	251, 475, 497, 582, 939, 1270
SspMI	CTAG	1 cut(s)	470
StuI	AGGCCT	1 cut(s)	1305
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	2 cut(s)	469, 561
TaaI	ACNGT	4 cut(s)	640, 835, 1162, 1357
TaqI	TCGA	1 cut(s)	381
TatI	WGTACW	2 cut(s)	759, 1002
TauI	GCSGC	2 cut(s)	477, 585
TfiI	GAWTC	2 cut(s)	606, 1054
Tru1I	TTAA	5 cut(s)	9, 656, 686, 1146, 1223
Tru9I	TTAA	5 cut(s)	9, 656, 686, 1146, 1223
TseFI	GTSAC	1 cut(s)	1351
TseI	GCWGC	1 cut(s)	854
Tsp45I	GTSAC	1 cut(s)	1351
TspDTI	ATGAA	6 cut(s)	193, 480, 707, 890, 1076, 1309
VpaK11BI	GGWCC	1 cut(s)	42
XapI	RAATTY	6 cut(s)	52, 145, 699, 807, 1063, 1176
XmaJI	CCTAGG	1 cut(s)	469
XspI	CTAG	1 cut(s)	470
Zsp2I	ATGCAT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.