Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002987

Physical Location & Seq

Genomic Coordinates Forward (+)

11726565 .. 11726966

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g07210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTGTTGCCAATTATCGGCCTATGCGAGCTCGGAAACTGCCCACAAACAACAGGTTGTGGTGTTTTGAGGGGAACTGCTAGGCCTACATTGGGAGCAAACATAAACTTAGGTTGCTTTTATCTTGTGGGAATGCCTGTTGCTGTGTGGTTGAGTTTTTATGCAGGGTTTGATTTTAGAGGACTTTGGCTTGGTCTTCTGGCAGCCCAAGGCTCATGTGTTTTGACCATGTTAATTGTTTTGCTTAGAACCAATTGGGATCTTCAAGGCCAGAGAGCCAAGGAGCTCACAGGAACTTTCACCATTGATGGCGATGATGATTTTCAAGATATTGATGAAGCTAGTGAGTCTTTGAGTCCATCACCAAACACACAAGAATGCAACAAATTATCACTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

134

Amino Acids

14.33

Weight (kDa)

4.29

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23030 AT5G52050
fragaria_vesca	FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_7g29000
malus_domestica	MD01G1196800.v1.1 MD04G1067600.v1.1 MD06G1072600.v1.1 MD07G1264100.v1.1
prunus_persica	Prupe.2G290200_v2.0.a1 Prupe.5G091200_v2.0.a1
pyrus_communis	pycom06g07200 pycom06g07210 pycom07g24280
rosa_chinensis	RchiOBHm_Chr1g0376711 RchiOBHm_Chr7g0199211
rosa_laevigata	RLG00000003806 RLG00000026577
rosa_multiflora	Rmu_sc0000950.1_g000021 Rmu_sc0006266.1_g000073 Rmu_sc0009691.1_g000001 Rmu_sc0017062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281860
rosa_rugosa	Rorug01G0397700.1 Rorug07G0053400
rosa_samantha	Rh1AG414800 Rh1BG374200 Rh1CG388100 Rh1DG405000 Rh7AG177100 Rh7BG180600 Rh7CG186300 Rh7DG180300
rosa_wichuraiana	Rw1G036380 Rw7G015590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	267
AfiI	CCNNNNNNNGG	2 cut(s)	17, 92
AgsI	TTSAA	2 cut(s)	266, 326
AluBI	AGCT	3 cut(s)	31, 286, 341
AluI	AGCT	3 cut(s)	31, 286, 341
Alw21I	GWGCWC	2 cut(s)	33, 288
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	3 cut(s)	19, 83, 268
ApeKI	GCWGC	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	292, 354
BanII	GRGCYC	2 cut(s)	33, 288
BbsI	GAAGAC	1 cut(s)	188
Bbv12I	GWGCWC	2 cut(s)	33, 288
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	2 cut(s)	302, 367
BfaI	CTAG	2 cut(s)	81, 342
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	208, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 92
Bse1I	ACTGG	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	208, 279
BseLI	CCNNNNNNNGG	2 cut(s)	17, 92
BseNI	ACTGG	1 cut(s)	399
BseXI	GCAGC	1 cut(s)	215
BshFI	GGCC	3 cut(s)	21, 85, 270
BsiHKAI	GWGCWC	2 cut(s)	33, 288
BslI	CCNNNNNNNGG	2 cut(s)	17, 92
BsmI	GAATGC	2 cut(s)	138, 383
BsnI	GGCC	3 cut(s)	21, 85, 270
Bsp1286I	GDGCHC	2 cut(s)	33, 288
Bsp143I	GATC	1 cut(s)	259
BspANI	GGCC	3 cut(s)	21, 85, 270
BspPI	GGATC	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	208, 279
BssMI	GATC	1 cut(s)	259
BssT1I	CCWWGG	2 cut(s)	208, 279
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	2 cut(s)	109, 245
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	21, 85, 270
BtgZI	GCGATG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	29
CviAII	CATG	2 cut(s)	216, 229
DdeI	CTNAG	2 cut(s)	109, 245
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Ecl136II	GAGCTC	2 cut(s)	31, 286
Eco130I	CCWWGG	2 cut(s)	208, 279
Eco147I	AGGCCT	1 cut(s)	85
Eco24I	GRGCYC	2 cut(s)	33, 288
Eco53kI	GAGCTC	2 cut(s)	31, 286
EcoICRI	GAGCTC	2 cut(s)	31, 286
EcoT14I	CCWWGG	2 cut(s)	208, 279
EcoT38I	GRGCYC	2 cut(s)	33, 288
ErhI	CCWWGG	2 cut(s)	208, 279
FaeI	CATG	2 cut(s)	219, 232
FaiI	YATR	6 cut(s)	25, 104, 162, 217, 230, 400
FatI	CATG	2 cut(s)	215, 228
Fnu4HI	GCNGC	1 cut(s)	204
FriOI	GRGCYC	2 cut(s)	33, 288
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	2 cut(s)	81, 342
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	21, 85, 270
Hin1II	CATG	2 cut(s)	219, 232
HinfI	GANTC	2 cut(s)	347, 355
HphI	GGTGA	2 cut(s)	292, 354
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	1 cut(s)	326
HpyCH4V	TGCA	2 cut(s)	164, 381
HpyF3I	CTNAG	2 cut(s)	109, 245
Hsp92II	CATG	2 cut(s)	219, 232
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	95, 283
LpnPI	CCDG	7 cut(s)	39, 150, 150, 185, 276, 284, 380
Lsp1109I	GCAGC	1 cut(s)	215
MaeI	CTAG	2 cut(s)	81, 342
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	188, 254
MfeI	CAATTG	1 cut(s)	253
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	33, 288
MluCI	AATT	4 cut(s)	12, 234, 253, 386
MlyI	GAGTC	2 cut(s)	356, 364
MnlI	CCTC	2 cut(s)	63, 173
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	2 cut(s)	376, 397
MunI	CAATTG	1 cut(s)	253
Mva1269I	GAATGC	2 cut(s)	138, 383
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	2 cut(s)	219, 232
PceI	AGGCCT	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	2 cut(s)	138, 383
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	2 cut(s)	355, 363
PpsI	GAGTC	2 cut(s)	355, 363
Psp124BI	GAGCTC	2 cut(s)	33, 288
PsuI	RGATCY	1 cut(s)	259
RseI	CAYNNNNRTG	2 cut(s)	376, 397
SacI	GAGCTC	2 cut(s)	33, 288
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	259
SchI	GAGTC	2 cut(s)	356, 364
SduI	GDGCHC	2 cut(s)	33, 288
SetI	ASST	5 cut(s)	33, 58, 115, 288, 343
SmiMI	CAYNNNNRTG	2 cut(s)	376, 397
Sse9I	AATT	4 cut(s)	12, 234, 253, 386
SseBI	AGGCCT	1 cut(s)	85
SspMI	CTAG	2 cut(s)	81, 342
SstI	GAGCTC	2 cut(s)	33, 288
StuI	AGGCCT	1 cut(s)	85
StyI	CCWWGG	2 cut(s)	208, 279
TasI	AATT	4 cut(s)	12, 234, 253, 386
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	399
XspI	CTAG	2 cut(s)	81, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.