Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002987

Physical Location & Seq

Genomic Coordinates Forward (+)

3780331 .. 3781267

Gene Structure 937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0053400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGGCCAAAGCATTTTTGGGCAGTAGAGGAGTGCTGCCGTTGGTGTATACTTCTCCACAGAGACCCAAATCCATGGCTGCCCGGACACCGATCCGCGCAGCTAACAAAACTGTTAGCTCCAAAAAGAATTCGACTCAAGTGAAGCTACTGACAAGGGTGGAGCAACTGAAGCTGCTGACCAAGGCCGAGAAAGCTGGTCTGCTATCGGCGGCAGAGAATTCCGGACTCTCACTGTCGGCAATAGAGAAGCTCGGTCTGCTGTCAAAGGCTGAAAAATTTGGAGTCCTATCGGCGGCCACTGACCCTGGAACTCCGGGGGCATTGCTGACTCTGAGCTTCGGACTACTGCTTTTGGGTCCATTGTCTGTTTTTCTTGTGCCTGAGGATTACCCTTGGGAGGTTGTTGTACAAGCTGTGGTTGCTGCTGTTTCTGTGGTGGGTGGTTCTGCGGCTTTTGGTGCATCAAATTTTGTATCCAACTTGCAGAAATCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

166

Amino Acids

17.24

Weight (kDa)

9.94

Isoelectric Point (pI)

23.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1118	PF06549	53 - 165	2.5e-46	Protein of unknown function (DUF1118)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23030 AT5G52050
fragaria_vesca	FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_5g01490 FvH4_7g29000
malus_domestica	MD01G1196800.v1.1 MD04G1067600.v1.1 MD06G1072600.v1.1 MD07G1264100.v1.1
prunus_persica	Prupe.2G290200_v2.0.a1 Prupe.5G091200_v2.0.a1
pyrus_communis	pycom06g07200 pycom06g07210 pycom07g24280
rosa_chinensis	RchiOBHm_Chr1g0376711 RchiOBHm_Chr7g0199211
rosa_laevigata	RLG00000003806 RLG00000026577
rosa_multiflora	Rmu_sc0000950.1_g000021 Rmu_sc0006266.1_g000073 Rmu_sc0009691.1_g000001 Rmu_sc0017062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281860
rosa_rugosa	Rorug01G0397700.1 Rorug07G0053400
rosa_samantha	Rh1AG414800 Rh1BG374200 Rh1CG388100 Rh1DG405000 Rh7AG177100 Rh7BG180600 Rh7CG186300 Rh7DG180300
rosa_wichuraiana	Rw1G036380 Rw7G015590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	50
AccII	CGCG	1 cut(s)	99
AccIII	TCCGGA	1 cut(s)	224
AciI	CCGC	4 cut(s)	97, 212, 296, 452
AclWI	GGATC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	4 cut(s)	130, 220, 278, 469
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	2 cut(s)	295, 400
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	8 cut(s)	104, 120, 148, 175, 197, 253, 339, 416
AluI	AGCT	8 cut(s)	104, 120, 148, 175, 197, 253, 339, 416
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	88
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	3 cut(s)	6, 186, 297
ApeKI	GCWGC	5 cut(s)	37, 80, 101, 175, 425
ApoI	RAATTY	4 cut(s)	130, 220, 278, 469
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	359
AsuC2I	CCSGG	2 cut(s)	85, 318
AvaII	GGWCC	1 cut(s)	359
AxyI	CCTNAGG	1 cut(s)	384
BbvI	GCAGC	5 cut(s)	24, 67, 113, 162, 412
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	309
BciVI	GTATCC	1 cut(s)	487
BcnI	CCSGG	2 cut(s)	85, 318
BcoDI	GTCTC	1 cut(s)	58
BfuI	GTATCC	1 cut(s)	487
BisI	GCNGC	8 cut(s)	38, 81, 102, 176, 213, 297, 426, 453
BlsI	GCNGC	8 cut(s)	39, 82, 103, 177, 214, 298, 427, 454
Bme1390I	CCNGG	3 cut(s)	85, 309, 318
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	3 cut(s)	85, 309, 318
BmsI	GCATC	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	123
BpuMI	CCSGG	2 cut(s)	85, 318
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	5 cut(s)	75, 183, 307, 317, 395
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 400
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	323
BseAI	TCCGGA	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	5 cut(s)	75, 183, 307, 317, 395
BseLI	CCNNNNNNNGG	2 cut(s)	295, 400
BseMI	GCAATG	1 cut(s)	323
BseMII	CTCAG	2 cut(s)	326, 375
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	5 cut(s)	24, 67, 113, 162, 412
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	8, 188, 299
BsiSI	CCGG	3 cut(s)	85, 225, 317
BslI	CCNNNNNNNGG	2 cut(s)	295, 400
BsmAI	GTCTC	1 cut(s)	58
BsnI	GGCC	3 cut(s)	8, 188, 299
Bso31I	GGTCTC	1 cut(s)	58
Bsp13I	TCCGGA	1 cut(s)	224
Bsp1407I	TGTACA	1 cut(s)	409
Bsp143I	GATC	1 cut(s)	93
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	4 cut(s)	97, 212, 296, 452
BspANI	GGCC	3 cut(s)	8, 188, 299
BspCNI	CTCAG	2 cut(s)	327, 376
BspEI	TCCGGA	1 cut(s)	224
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	409
BssECI	CCNNGG	5 cut(s)	75, 183, 307, 317, 395
BssMI	GATC	1 cut(s)	93
BssNAI	GTATAC	1 cut(s)	51
BssT1I	CCWWGG	3 cut(s)	75, 183, 395
Bst1107I	GTATAC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	115, 237
BstAUI	TGTACA	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	335, 384
BstDSI	CCRYGG	1 cut(s)	75
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	5 cut(s)	172, 194, 259, 422, 461
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	3 cut(s)	83, 307, 316
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	5 cut(s)	24, 67, 113, 162, 412
BstXI	CCANNNNNNTGG	1 cut(s)	76
BstZ17I	GTATAC	1 cut(s)	51
Bsu36I	CCTNAGG	1 cut(s)	384
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	3 cut(s)	8, 188, 299
BtgI	CCRYGG	1 cut(s)	75
BtsIMutI	CAGTG	2 cut(s)	233, 300
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	1 cut(s)	76
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	2 cut(s)	335, 384
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
EaeI	YGGCCR	1 cut(s)	297
Eco130I	CCWWGG	3 cut(s)	75, 183, 395
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	191
Eco81I	CCTNAGG	1 cut(s)	384
EcoRI	GAATTC	2 cut(s)	130, 220
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	3 cut(s)	75, 183, 395
ErhI	CCWWGG	3 cut(s)	75, 183, 395
FaeI	CATG	1 cut(s)	79
FaiI	YATR	2 cut(s)	51, 77
FatI	CATG	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	8 cut(s)	38, 81, 102, 176, 213, 297, 426, 453
Fsp4HI	GCNGC	8 cut(s)	38, 81, 102, 176, 213, 297, 426, 453
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	8 cut(s)	38, 81, 102, 176, 213, 297, 426, 453
HaeIII	GGCC	3 cut(s)	8, 188, 299
HapII	CCGG	3 cut(s)	85, 225, 317
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HinfI	GANTC	4 cut(s)	136, 228, 285, 331
HpaII	CCGG	3 cut(s)	85, 225, 317
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	336, 344
Hpy188III	TCNNGA	1 cut(s)	225
Hpy8I	GTNNAC	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	115, 237
HpyCH4V	TGCA	2 cut(s)	464, 487
HpyF10VI	GCNNNNNNNGC	5 cut(s)	172, 194, 259, 422, 461
HpyF3I	CTNAG	2 cut(s)	335, 384
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	99
Kpn2I	TCCGGA	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	2 cut(s)	125, 163
LpnPI	CCDG	7 cut(s)	98, 183, 238, 294, 321, 330, 396
Lsp1109I	GCAGC	5 cut(s)	24, 67, 113, 162, 412
LweI	GCATC	1 cut(s)	473
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MluCI	AATT	5 cut(s)	130, 220, 278, 469, 496
MlyI	GAGTC	4 cut(s)	130, 222, 294, 325
MnlI	CCTC	3 cut(s)	23, 379, 394
MroI	TCCGGA	1 cut(s)	224
MspI	CCGG	3 cut(s)	85, 225, 317
MspR9I	CCNGG	3 cut(s)	85, 309, 318
MvaI	CCWGG	1 cut(s)	309
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	5 cut(s)	172, 194, 259, 422, 461
NciI	CCSGG	2 cut(s)	85, 318
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	360
NmeAIII	GCCGAG	1 cut(s)	214
PkrI	GCNGC	8 cut(s)	39, 82, 103, 177, 214, 298, 427, 454
PleI	GAGTC	4 cut(s)	130, 222, 293, 325
PpsI	GAGTC	4 cut(s)	130, 222, 293, 325
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	1 cut(s)	359
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SatI	GCNGC	8 cut(s)	38, 81, 102, 176, 213, 297, 426, 453
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	4 cut(s)	130, 222, 294, 325
ScrFI	CCNGG	3 cut(s)	85, 309, 318
SetI	ASST	9 cut(s)	106, 122, 150, 177, 199, 255, 341, 405, 418
SfaNI	GCATC	1 cut(s)	473
SinI	GGWCC	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	5 cut(s)	130, 220, 278, 469, 496
SsiI	CCGC	4 cut(s)	97, 212, 296, 452
StyD4I	CCNGG	3 cut(s)	83, 307, 316
StyI	CCWWGG	3 cut(s)	75, 183, 395
TaaI	ACNGT	2 cut(s)	115, 237
TaqI	TCGA	1 cut(s)	134
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	5 cut(s)	130, 220, 278, 469, 496
TatI	WGTACW	1 cut(s)	409
TauI	GCSGC	3 cut(s)	215, 299, 455
TscAI	CASTG	2 cut(s)	240, 307
TseI	GCWGC	5 cut(s)	37, 80, 101, 175, 425
TspRI	CASTG	2 cut(s)	240, 307
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	4 cut(s)	130, 220, 278, 469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.