AT4G24210

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015383
Physical Location & Seq
Forward (+)
12563279 .. 12564482
1204 bp
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UTR
Exon/CDS
Intron
AT4G24210.1

Sequence Viewer

Length: 456 bp
ATGAAGCGCAGTACTACCGACTCTGATTTGGCCGGTGATGCTCACAACGAGACAAACAAGAAGATGAAGAGTACAGAGGAAGAAGAAATCGGATTCTCCAATTTAGACGAGAATCTAGTGTACGAGGTGTTGAAACACGTCGACGCAAAGACCTTAGCTATGTCATCTTGCGTGAGCAAGATCTGGCACAAAACGGCACAAGACGAGCGGCTTTGGGAGCTGATCTGTACTCGTCACTGGACTAACATCGGCTGCGGGCAGAACCAGCTCAGATCTGTTGTGTTGGCGCTTGGTGGCTTCCGAAGACTCCACTCTCTTTACCTCTGGCCTCTCTCTAAACCCAATCCGCGTGCTAGGTTCGGTAAGGACGAGCTTAAACTCACTCTTTCTCTTCTCTCAATTCGATACTACGAGAAGATGAGTTTCACTAAGAGACCTCTTCCAGAATCCAAATAA

Protein Analysis

151

Amino Acids

17.45

Weight (kDa)

9.15

Isoelectric Point (pI)

60.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 32 - 73 2.9e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24210
fragaria_vesca FvH4_2g33690
malus_domestica MD08G1091700.v1.1 MD15G1075800.v1.1
prunus_persica Prupe.1G429300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0308861
rosa_laevigata RLG00000010612
rosa_multiflora Rmu_co8338391.1_g000002 Rmu_sc0004046.1_g000011
rosa_roxburghii Rroxscaffold_7G00159850
rosa_rugosa Rorug06G0368700
rosa_samantha Rh6AG480200 Rh6BG489700 Rh6CG495100 Rh6DG480500
rosa_wichuraiana Rw6G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 208
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 349
AciI CCGC 3 cut(s) 208, 255, 347
AcoI YGGCCR 1 cut(s) 30
AfaI GTAC 4 cut(s) 13, 73, 122, 229
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 1 cut(s) 133
AjiI CACGTC 1 cut(s) 139
AluBI AGCT 4 cut(s) 158, 220, 268, 373
AluI AGCT 4 cut(s) 158, 220, 268, 373
Alw26I GTCTC 2 cut(s) 44, 427
AoxI GGCC 2 cut(s) 30, 326
ApeKI GCWGC 1 cut(s) 252
AspLEI GCGC 2 cut(s) 9, 289
AsuHPI GGTGA 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 310
BbvI GCAGC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 44, 427
BfaI CTAG 2 cut(s) 116, 354
BfoI RGCGCY 1 cut(s) 290
BglII AGATCT 2 cut(s) 180, 272
BisI GCNGC 2 cut(s) 209, 253
BlsI GCNGC 2 cut(s) 210, 254
BmcAI AGTACT 1 cut(s) 13
BmgBI CACGTC 1 cut(s) 139
BmsI GCATC 1 cut(s) 28
BpiI GAAGAC 1 cut(s) 310
Bpu10I CCTNAGC 1 cut(s) 154
BsaI GGTCTC 1 cut(s) 427
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 283
BseNI ACTGG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 349
BshFI GGCC 2 cut(s) 32, 328
BsiSI CCGG 1 cut(s) 33
BsmAI GTCTC 2 cut(s) 44, 427
BsnI GGCC 2 cut(s) 32, 328
Bso31I GGTCTC 1 cut(s) 427
Bsp143I GATC 3 cut(s) 180, 222, 272
BspACI CCGC 3 cut(s) 208, 255, 347
BspANI GGCC 2 cut(s) 32, 328
BspCNI CTCAG 1 cut(s) 282
BspFNI CGCG 1 cut(s) 349
BspTNI GGTCTC 1 cut(s) 427
BsrBI CCGCTC 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 32
BssMI GATC 3 cut(s) 180, 222, 272
Bst6I CTCTTC 3 cut(s) 62, 396, 444
BstC8I GCNNGC 2 cut(s) 257, 351
BstDEI CTNAG 3 cut(s) 154, 269, 429
BstFNI CGCG 1 cut(s) 349
BstH2I RGCGCY 1 cut(s) 290
BstHHI GCGC 2 cut(s) 9, 289
BstKTI GATC 3 cut(s) 183, 225, 275
BstMAI GTCTC 2 cut(s) 44, 427
BstMBI GATC 3 cut(s) 180, 222, 272
BstMWI GCNNNNNNNGC 3 cut(s) 38, 217, 265
BstUI CGCG 1 cut(s) 349
BstV1I GCAGC 1 cut(s) 239
BstV2I GAAGAC 1 cut(s) 310
BstX2I RGATCY 2 cut(s) 180, 272
BstYI RGATCY 2 cut(s) 180, 272
BsuRI GGCC 2 cut(s) 32, 328
BtrI CACGTC 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 257, 351
CfoI GCGC 2 cut(s) 9, 289
Cfr10I RCCGGY 1 cut(s) 32
CseI GACGC 1 cut(s) 152
Csp6I GTAC 4 cut(s) 12, 72, 121, 228
CviJI RGCY 9 cut(s) 32, 158, 211, 220, 252, 268, 297, 328, 373
CviKI_1 RGCY 9 cut(s) 32, 158, 211, 220, 252, 268, 297, 328, 373
CviQI GTAC 4 cut(s) 12, 72, 121, 228
DdeI CTNAG 3 cut(s) 154, 269, 429
DpnI GATC 3 cut(s) 182, 224, 274
DpnII GATC 3 cut(s) 180, 222, 272
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 3 cut(s) 62, 396, 444
EarI CTCTTC 3 cut(s) 62, 396, 444
Eco31I GGTCTC 1 cut(s) 427
FaiI YATR 1 cut(s) 161
FauI CCCGC 1 cut(s) 248
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 209, 253
Fsp4HI GCNGC 2 cut(s) 209, 253
FspBI CTAG 2 cut(s) 116, 354
GlaI GCGC 2 cut(s) 8, 288
GluI GCNGC 2 cut(s) 209, 253
HaeII RGCGCY 1 cut(s) 290
HaeIII GGCC 2 cut(s) 32, 328
HapII CCGG 1 cut(s) 33
HgaI GACGC 1 cut(s) 152
HhaI GCGC 2 cut(s) 9, 289
Hin6I GCGC 2 cut(s) 7, 287
HinP1I GCGC 2 cut(s) 7, 287
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 5 cut(s) 20, 93, 112, 306, 446
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 121, 142
Hpy188I TCNGA 4 cut(s) 25, 92, 272, 302
Hpy188III TCNNGA 1 cut(s) 443
Hpy8I GTNNAC 2 cut(s) 121, 142
Hpy99I CGWCG 2 cut(s) 143, 146
HpyCH4IV ACGT 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 217, 265
HpyF3I CTNAG 3 cut(s) 154, 269, 429
HpySE526I ACGT 1 cut(s) 138
HspAI GCGC 2 cut(s) 7, 287
Kzo9I GATC 3 cut(s) 180, 222, 272
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 5 cut(s) 46, 169, 223, 278, 310
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 1 cut(s) 28
MaeI CTAG 2 cut(s) 116, 354
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 233
MalI GATC 3 cut(s) 182, 224, 274
MbiI CCGCTC 1 cut(s) 208
MboI GATC 3 cut(s) 180, 222, 272
MboII GAAGA 8 cut(s) 73, 79, 92, 95, 315, 383, 427, 431
MflI RGATCY 2 cut(s) 180, 272
MluCI AATT 2 cut(s) 100, 399
MlyI GAGTC 2 cut(s) 14, 300
MnlI CCTC 5 cut(s) 70, 118, 332, 339, 447
MseI TTAA 1 cut(s) 375
MspI CCGG 1 cut(s) 33
MvnI CGCG 1 cut(s) 349
MwoI GCNNNNNNNGC 3 cut(s) 38, 217, 265
NdeII GATC 3 cut(s) 180, 222, 272
NmuCI GTSAC 1 cut(s) 233
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PfeI GAWTC 3 cut(s) 93, 112, 446
PkrI GCNGC 2 cut(s) 210, 254
PleI GAGTC 2 cut(s) 14, 300
PpsI GAGTC 2 cut(s) 14, 300
PsuI RGATCY 2 cut(s) 180, 272
RsaI GTAC 4 cut(s) 13, 73, 122, 229
RsaNI GTAC 4 cut(s) 12, 72, 121, 228
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 2 cut(s) 209, 253
Sau3AI GATC 3 cut(s) 180, 222, 272
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 2 cut(s) 14, 300
SfaNI GCATC 1 cut(s) 28
SgrDI CGTCGACG 1 cut(s) 140
Sse9I AATT 2 cut(s) 100, 399
SsiI CCGC 3 cut(s) 208, 255, 347
SspMI CTAG 2 cut(s) 116, 354
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 141, 403
TasI AATT 2 cut(s) 100, 399
TatI WGTACW 3 cut(s) 11, 71, 227
TauI GCSGC 1 cut(s) 211
TfiI GAWTC 3 cut(s) 93, 112, 446
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 1 cut(s) 242
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 252
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 17, 80
TspRI CASTG 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 2 cut(s) 116, 354
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.