Prupe.1G429300_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015383
Physical Location & Seq
Forward (+)
36839635 .. 36842568
2934 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G429300.1

Sequence Viewer

Length: 561 bp
ATGAAACGCGCATCATCGGGGGACGATTCGATGGCGGCGACCTCAGCTGATGTGAAGATGAAGAAGATGAAGGTTGAGGGTGAAGAAGAAGAGGTGGAGGTTGACCAGATTGACCAGGTTGTGGAAGGGGCTGGGTTTGTGAATCTGGACGACAATCTCATATTCGAGGTGTTTAAGCACGTGGACGCTAGGACGCTGGGGATGGCGTCGTGCGTGAACAAGCAGTGGCACAAGACGGCGCAGGACGAGCGGCTTTGGGAGCTCATCTGCACCAGGCACTGGGCCAACATCGGCTGCGGCAACCAGCAGCTGAGATCTGTGGTCCTCGCTCTCGGCGGCTTTCGTCGGCTTCACTCCCACTTTATCTGGCCTCTCAGCAAGCCTTCCTCCAGCTCTTCTTCTTCCTCATCGTCGTCAGCTTCGCCTTGGGCATCTCCGTTGAAGCCCATGCTCGGCTCCAAGCCTAGCGCTCGTTGGGGAAAAGACGAGGTGAATCTATCACTCTCGCTTCTCTCGATTCGTTTTTACGAGAAGATGAATTACGCTAACAGAGGCAGATGA

Protein Analysis

187

Amino Acids

20.73

Weight (kDa)

8.44

Isoelectric Point (pI)

58.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24210
fragaria_vesca FvH4_2g33690
malus_domestica MD08G1091700.v1.1 MD15G1075800.v1.1
prunus_persica Prupe.1G429300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0308861
rosa_laevigata RLG00000010612
rosa_multiflora Rmu_co8338391.1_g000002 Rmu_sc0004046.1_g000011
rosa_roxburghii Rroxscaffold_7G00159850
rosa_rugosa Rorug06G0368700
rosa_samantha Rh6AG480200 Rh6BG489700 Rh6CG495100 Rh6DG480500
rosa_wichuraiana Rw6G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 121, 279
AccBSI CCGCTC 1 cut(s) 250
AccII CGCG 1 cut(s) 9
AciI CCGC 4 cut(s) 35, 250, 297, 336
AcvI CACGTG 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 206
AfeI AGCGCT 1 cut(s) 469
AfiI CCNNNNNNNGG 3 cut(s) 121, 279, 452
AgsI TTSAA 1 cut(s) 442
AjnI CCWGG 2 cut(s) 114, 272
AluBI AGCT 5 cut(s) 47, 262, 310, 393, 419
AluI AGCT 5 cut(s) 47, 262, 310, 393, 419
Alw21I GWGCWC 1 cut(s) 264
AlwNI CAGNNNCTG 2 cut(s) 279, 310
Aor51HI AGCGCT 1 cut(s) 469
AoxI GGCC 2 cut(s) 282, 368
ApeKI GCWGC 2 cut(s) 294, 307
AspLEI GCGC 3 cut(s) 11, 241, 470
AspS9I GGNCC 2 cut(s) 282, 322
AsuHPI GGTGA 2 cut(s) 92, 502
AvaII GGWCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 264
BarI GAAGNNNNNNTAC 2 cut(s) 524, 556
BbrPI CACGTG 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 264
BbvCI CCTCAGC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 281, 319
BccI CCATC 2 cut(s) 25, 196
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 2 cut(s) 116, 274
BfaI CTAG 2 cut(s) 189, 465
BfoI RGCGCY 1 cut(s) 471
BglII AGATCT 1 cut(s) 314
BisI GCNGC 6 cut(s) 36, 251, 295, 298, 308, 337
BlsI GCNGC 6 cut(s) 37, 252, 296, 299, 309, 338
Bme1390I CCNGG 2 cut(s) 116, 274
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 282, 322
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 2 cut(s) 116, 274
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 2 cut(s) 20, 440
BmuI ACTGGG 1 cut(s) 289
BpmI CTGGAG 1 cut(s) 373
Bpu10I CCTNAGC 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 181
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 425
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 279, 452
Bse1I ACTGG 1 cut(s) 284
BseBI CCWGG 2 cut(s) 116, 274
BseDI CCNNGG 1 cut(s) 425
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 3 cut(s) 121, 279, 452
BseMII CTCAG 3 cut(s) 57, 302, 388
BseNI ACTGG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 281, 319
BseYI CCCAGC 2 cut(s) 131, 196
BsgI GTGCAG 1 cut(s) 253
Bsh1236I CGCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 284, 370
BsiHKAI GWGCWC 1 cut(s) 264
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 3 cut(s) 121, 279, 452
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 2 cut(s) 284, 370
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 1 cut(s) 314
BspACI CCGC 4 cut(s) 35, 250, 297, 336
BspANI GGCC 2 cut(s) 284, 370
BspCNI CTCAG 3 cut(s) 56, 303, 387
BspFNI CGCG 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 457
BspQI GCTCTTC 1 cut(s) 400
BsrBI CCGCTC 1 cut(s) 250
BsrI ACTGG 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 1 cut(s) 314
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 425
Bst2UI CCWGG 2 cut(s) 116, 274
Bst6I CTCTTC 2 cut(s) 84, 400
BstACI GRCGYC 1 cut(s) 206
BstBAI YACGTR 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 3 cut(s) 43, 311, 374
BstF5I GGATG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 9
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 3 cut(s) 11, 241, 470
BstKTI GATC 1 cut(s) 317
BstMBI GATC 1 cut(s) 314
BstMWI GCNNNNNNNGC 3 cut(s) 44, 247, 259
BstNI CCWGG 2 cut(s) 116, 274
BstSCI CCNGG 2 cut(s) 114, 272
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 281, 319
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
BsuRI GGCC 2 cut(s) 284, 370
BtsCI GGATG 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 2 cut(s) 230, 277
Cac8I GCNNGC 1 cut(s) 380
CaiI CAGNNNCTG 2 cut(s) 279, 310
CfoI GCGC 3 cut(s) 11, 241, 470
Cfr13I GGNCC 2 cut(s) 282, 322
CseI GACGC 3 cut(s) 194, 195, 202
CsiI ACCWGGT 1 cut(s) 114
CviAII CATG 1 cut(s) 448
DdeI CTNAG 3 cut(s) 43, 311, 374
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
Eam1104I CTCTTC 2 cut(s) 84, 400
EarI CTCTTC 2 cut(s) 84, 400
Ecl136II GAGCTC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 425
Eco24I GRGCYC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 322
Eco47III AGCGCT 1 cut(s) 469
Eco53kI GAGCTC 1 cut(s) 262
Eco72I CACGTG 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 262
EcoRII CCWGG 2 cut(s) 114, 272
EcoT14I CCWWGG 1 cut(s) 425
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 425
FaeI CATG 1 cut(s) 451
FaiI YATR 2 cut(s) 161, 449
FaqI GGGAC 1 cut(s) 35
FatI CATG 1 cut(s) 447
Fnu4HI GCNGC 6 cut(s) 36, 251, 295, 298, 308, 337
FokI GGATG 1 cut(s) 214
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 6 cut(s) 36, 251, 295, 298, 308, 337
FspBI CTAG 2 cut(s) 189, 465
GlaI GCGC 3 cut(s) 10, 240, 469
GluI GCNGC 6 cut(s) 36, 251, 295, 298, 308, 337
GsaI CCCAGC 2 cut(s) 135, 200
GsuI CTGGAG 1 cut(s) 373
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 2 cut(s) 284, 370
HgaI GACGC 3 cut(s) 194, 195, 202
HhaI GCGC 3 cut(s) 11, 241, 470
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 3 cut(s) 9, 239, 468
HinP1I GCGC 3 cut(s) 9, 239, 468
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 4 cut(s) 26, 142, 493, 517
HphI GGTGA 2 cut(s) 92, 502
Hpy166II GTNNAC 3 cut(s) 103, 184, 217
Hpy188III TCNNGA 2 cut(s) 146, 514
Hpy8I GTNNAC 3 cut(s) 103, 184, 217
Hpy99I CGWCG 3 cut(s) 211, 348, 415
HpyAV CCTTC 3 cut(s) 64, 119, 393
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 247, 259
HpyF3I CTNAG 3 cut(s) 43, 311, 374
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 3 cut(s) 9, 239, 468
Kzo9I GATC 1 cut(s) 314
LguI GCTCTTC 1 cut(s) 400
LmnI GCTCC 2 cut(s) 259, 461
Lsp1109I GCAGC 2 cut(s) 281, 319
LweI GCATC 2 cut(s) 20, 440
MabI ACCWGGT 1 cut(s) 114
MaeI CTAG 2 cut(s) 189, 465
MaeII ACGT 1 cut(s) 180
MalI GATC 1 cut(s) 316
MbiI CCGCTC 1 cut(s) 250
MboI GATC 1 cut(s) 314
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 1 cut(s) 538
MseI TTAA 1 cut(s) 174
MspA1I CMGCKG 2 cut(s) 47, 310
MspR9I CCNGG 2 cut(s) 116, 274
MvaI CCWGG 2 cut(s) 116, 274
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 3 cut(s) 44, 247, 259
NdeII GATC 1 cut(s) 314
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 1 cut(s) 457
NmeAIII GCCGAG 2 cut(s) 312, 432
PciSI GCTCTTC 1 cut(s) 400
PcsI WCGNNNNNNNCGW 2 cut(s) 35, 512
PfeI GAWTC 4 cut(s) 26, 142, 493, 517
PflMI CCANNNNNTGG 2 cut(s) 121, 279
PkrI GCNGC 6 cut(s) 37, 252, 296, 299, 309, 338
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 264
Psp6I CCWGG 2 cut(s) 114, 272
PspCI CACGTG 1 cut(s) 181
PspFI CCCAGC 2 cut(s) 131, 196
PspGI CCWGG 2 cut(s) 114, 272
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 2 cut(s) 282, 322
PstNI CAGNNNCTG 2 cut(s) 279, 310
PsuI RGATCY 1 cut(s) 314
PvuII CAGCTG 2 cut(s) 47, 310
SacI GAGCTC 1 cut(s) 264
SapI GCTCTTC 1 cut(s) 400
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 6 cut(s) 36, 251, 295, 298, 308, 337
Sau3AI GATC 1 cut(s) 314
Sau96I GGNCC 2 cut(s) 282, 322
ScrFI CCNGG 2 cut(s) 116, 274
SduI GDGCHC 1 cut(s) 264
SexAI ACCWGGT 1 cut(s) 114
SfaNI GCATC 2 cut(s) 20, 440
SinI GGWCC 1 cut(s) 322
Sse9I AATT 1 cut(s) 538
SsiI CCGC 4 cut(s) 35, 250, 297, 336
SspMI CTAG 2 cut(s) 189, 465
SstI GAGCTC 1 cut(s) 264
StyD4I CCNGG 2 cut(s) 114, 272
StyI CCWWGG 1 cut(s) 425
TaiI ACGT 1 cut(s) 183
TaqI TCGA 3 cut(s) 29, 165, 515
TasI AATT 1 cut(s) 538
TauI GCSGC 4 cut(s) 38, 253, 300, 339
TfiI GAWTC 4 cut(s) 26, 142, 493, 517
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 2 cut(s) 230, 284
TseI GCWGC 2 cut(s) 294, 307
TspDTI ATGAA 4 cut(s) 17, 74, 83, 551
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 2 cut(s) 230, 284
Van91I CCANNNNNTGG 2 cut(s) 121, 279
VpaK11BI GGWCC 1 cut(s) 322
XspI CTAG 2 cut(s) 189, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.