MD08G1091700.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0015383
Physical Location & Seq
Forward (+)
7627458 .. 7628048
591 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1091700.v1.1.491

Sequence Viewer

Length: 591 bp
ATGAAGCGAGCATCATCGGGGGACGATTCGATGGCGGCGACGGAGAGCTTGGCGGATGTGAAGATGAAGAGGGTTAAGGTGGAGGAGGAGGAGGTGGAGGTGGCTGACTGCGTTGACATGGATGAGCTGAAAGGGGCGGGGTTTTCGAATCTGGACGACAATCTGATCTTCGAGGTGTTCAAGCACGTGGATGCGCGGACGTTGGGGATGGCGTCGTGCGTGAGCAAGCAGTGGCACAAGACGGCGGAGGATGAGCGGCTCTGGGAGCTGATATGCACCAGGCACTGGGCCAACACGGGCTGCGGCAGCCAGCAGCTGAGATCTGTGGTCCTCGCTCTCGGTGGGTTCCGGCGGCTTCACGCCCACTACATCTGGCGTCTCAGCAAGGCCTCCTCCTCCTCGAGCTCCGTCCCTTCATTCTCGTCGGCGGCGTCCTCCTCTGATTCGCCTTGGGCGGCGGCTCCGGTGAAGCCGATGCTGAACCCGAAGCCGCCGAGCGCTCGGTGGGGAAAGGACGAGGTGAATCTGTCCCTCTCGCTCTTCTCGATTCGGTTTTACGAGAAGATGAACTACGCAAACAGAGGAAGATGA

Protein Analysis

197

Amino Acids

21.79

Weight (kDa)

7.7

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 48 - 89 2.5e-08 F-box domain
F-box-like PF12937 54 - 93 8.8e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24210
fragaria_vesca FvH4_2g33690
malus_domestica MD08G1091700.v1.1 MD15G1075800.v1.1
prunus_persica Prupe.1G429300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0308861
rosa_laevigata RLG00000010612
rosa_multiflora Rmu_co8338391.1_g000002 Rmu_sc0004046.1_g000011
rosa_roxburghii Rroxscaffold_7G00159850
rosa_rugosa Rorug06G0368700
rosa_samantha Rh6AG480200 Rh6BG489700 Rh6CG495100 Rh6DG480500
rosa_wichuraiana Rw6G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 285
AccBSI CCGCTC 1 cut(s) 256
AccII CGCG 1 cut(s) 196
AcvI CACGTG 1 cut(s) 187
AcyI GRCGYC 3 cut(s) 212, 376, 431
AfeI AGCGCT 1 cut(s) 499
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 1 cut(s) 181
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 5 cut(s) 48, 127, 268, 316, 405
AluI AGCT 5 cut(s) 48, 127, 268, 316, 405
Alw21I GWGCWC 1 cut(s) 407
Alw26I GTCTC 1 cut(s) 383
AlwNI CAGNNNCTG 2 cut(s) 285, 316
Ama87I CYCGRG 1 cut(s) 400
Aor51HI AGCGCT 1 cut(s) 499
AoxI GGCC 2 cut(s) 288, 387
ApeKI GCWGC 3 cut(s) 300, 306, 313
AspLEI GCGC 2 cut(s) 196, 500
AspS9I GGNCC 2 cut(s) 288, 328
AsuHPI GGTGA 2 cut(s) 478, 532
AsuII TTCGAA 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 400
AvaII GGWCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 407
BarI GAAGNNNNNNTAC 2 cut(s) 554, 586
BbrPI CACGTG 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 407
BbvI GCAGC 3 cut(s) 287, 318, 325
BccI CCATC 2 cut(s) 25, 202
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 383
BfoI RGCGCY 1 cut(s) 501
BglII AGATCT 1 cut(s) 320
Bme1390I CCNGG 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 328
BmeT110I CYCGRG 1 cut(s) 400
BmgT120I GGNCC 2 cut(s) 288, 328
BmiI GGNNCC 2 cut(s) 347, 462
BmrFI CCNGG 1 cut(s) 280
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 3 cut(s) 20, 181, 465
BmuI ACTGGG 1 cut(s) 295
Bpu14I TTCGAA 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 187
BsaHI GRCGYC 3 cut(s) 212, 376, 431
BsaJI CCNNGG 1 cut(s) 449
BsaWI WCCGGW 1 cut(s) 463
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 290
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 449
BseGI GGATG 5 cut(s) 61, 127, 196, 213, 256
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMII CTCAG 2 cut(s) 308, 394
BseNI ACTGG 1 cut(s) 290
BseRI GAGGAG 7 cut(s) 98, 101, 104, 382, 385, 388, 427
BseXI GCAGC 3 cut(s) 287, 318, 325
Bsh1236I CGCG 1 cut(s) 196
BshFI GGCC 2 cut(s) 290, 389
BsiHKAI GWGCWC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 400
BsiSI CCGG 2 cut(s) 349, 464
BslFI GGGAC 3 cut(s) 35, 395, 514
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 383
BsmBI CGTCTC 1 cut(s) 383
BsmFI GGGAC 3 cut(s) 35, 395, 514
BsnI GGCC 2 cut(s) 290, 389
BsoBI CYCGRG 1 cut(s) 400
Bsp119I TTCGAA 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 407
Bsp143I GATC 2 cut(s) 165, 320
BspANI GGCC 2 cut(s) 290, 389
BspCNI CTCAG 2 cut(s) 309, 393
BspFNI CGCG 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 347, 462
BspQI GCTCTTC 1 cut(s) 545
BspT104I TTCGAA 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 256
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 449
BssMI GATC 2 cut(s) 165, 320
BssNI GRCGYC 3 cut(s) 212, 376, 431
BssT1I CCWWGG 1 cut(s) 449
Bst2UI CCWGG 1 cut(s) 280
Bst6I CTCTTC 2 cut(s) 62, 545
BstACI GRCGYC 3 cut(s) 212, 376, 431
BstBAI YACGTR 1 cut(s) 187
BstBI TTCGAA 1 cut(s) 146
BstC8I GCNNGC 3 cut(s) 9, 227, 311
BstDEI CTNAG 2 cut(s) 317, 380
BstF5I GGATG 5 cut(s) 61, 127, 196, 213, 256
BstFNI CGCG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 2 cut(s) 196, 500
BstKTI GATC 2 cut(s) 168, 323
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 2 cut(s) 165, 320
BstMWI GCNNNNNNNGC 2 cut(s) 265, 306
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 278
BstUI CGCG 1 cut(s) 196
BstV1I GCAGC 3 cut(s) 287, 318, 325
BstX2I RGATCY 1 cut(s) 320
BstYI RGATCY 1 cut(s) 320
BsuRI GGCC 2 cut(s) 290, 389
BtsCI GGATG 5 cut(s) 61, 127, 196, 213, 256
BtsI GCAGTG 1 cut(s) 236
BtsIMutI CAGTG 2 cut(s) 236, 283
Cac8I GCNNGC 3 cut(s) 9, 227, 311
CaiI CAGNNNCTG 2 cut(s) 285, 316
CfoI GCGC 2 cut(s) 196, 500
Cfr13I GGNCC 2 cut(s) 288, 328
CseI GACGC 3 cut(s) 201, 365, 420
CviAII CATG 1 cut(s) 118
DdeI CTNAG 2 cut(s) 317, 380
DpnI GATC 2 cut(s) 167, 322
DpnII GATC 2 cut(s) 165, 320
Eam1104I CTCTTC 2 cut(s) 62, 545
EarI CTCTTC 2 cut(s) 62, 545
EciI GGCGGA 2 cut(s) 68, 260
Ecl136II GAGCTC 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 449
Eco147I AGGCCT 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 328
Eco47III AGCGCT 1 cut(s) 499
Eco53kI GAGCTC 1 cut(s) 405
Eco72I CACGTG 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 449
EcoT38I GRGCYC 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 449
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 1 cut(s) 121
FaiI YATR 2 cut(s) 119, 274
FaqI GGGAC 3 cut(s) 35, 395, 514
FatI CATG 1 cut(s) 117
FauI CCCGC 1 cut(s) 130
FokI GGATG 5 cut(s) 68, 134, 203, 220, 263
FriOI GRGCYC 1 cut(s) 407
GlaI GCGC 2 cut(s) 195, 499
HaeII RGCGCY 1 cut(s) 501
HaeIII GGCC 2 cut(s) 290, 389
HapII CCGG 2 cut(s) 349, 464
HgaI GACGC 3 cut(s) 201, 365, 420
HhaI GCGC 2 cut(s) 196, 500
Hin1I GRCGYC 3 cut(s) 212, 376, 431
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 2 cut(s) 194, 498
HinP1I GCGC 2 cut(s) 194, 498
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 5 cut(s) 26, 148, 443, 523, 547
HpaII CCGG 2 cut(s) 349, 464
HphI GGTGA 2 cut(s) 478, 532
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 165, 442
Hpy188III TCNNGA 2 cut(s) 152, 544
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 3 cut(s) 43, 217, 427
HpyAV CCTTC 1 cut(s) 423
HpyCH4IV ACGT 2 cut(s) 186, 200
HpyCH4V TGCA 1 cut(s) 276
HpyF10VI GCNNNNNNNGC 2 cut(s) 265, 306
HpyF3I CTNAG 2 cut(s) 317, 380
HpySE526I ACGT 2 cut(s) 186, 200
Hsp92I GRCGYC 3 cut(s) 212, 376, 431
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 2 cut(s) 194, 498
Kzo9I GATC 2 cut(s) 165, 320
LguI GCTCTTC 1 cut(s) 545
LmnI GCTCC 3 cut(s) 265, 410, 466
LpnPI CCDG 9 cut(s) 137, 247, 265, 271, 292, 323, 358, 362, 477
Lsp1109I GCAGC 3 cut(s) 287, 318, 325
LweI GCATC 3 cut(s) 20, 181, 465
MaeII ACGT 2 cut(s) 186, 200
MalI GATC 2 cut(s) 167, 322
MbiI CCGCTC 1 cut(s) 256
MboI GATC 2 cut(s) 165, 320
MboII GAAGA 5 cut(s) 73, 79, 160, 532, 574
MflI RGATCY 1 cut(s) 320
MhlI GDGCHC 1 cut(s) 407
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 316
MspI CCGG 2 cut(s) 349, 464
MspR9I CCNGG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 280
MvnI CGCG 1 cut(s) 196
MwoI GCNNNNNNNGC 2 cut(s) 265, 306
NdeII GATC 2 cut(s) 165, 320
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 2 cut(s) 347, 462
NmeAIII GCCGAG 1 cut(s) 519
NspV TTCGAA 1 cut(s) 146
PaeR7I CTCGAG 1 cut(s) 400
PceI AGGCCT 1 cut(s) 389
PciSI GCTCTTC 1 cut(s) 545
PcsI WCGNNNNNNNCGW 3 cut(s) 35, 428, 542
PfeI GAWTC 5 cut(s) 26, 148, 443, 523, 547
PflMI CCANNNNNTGG 1 cut(s) 285
PmaCI CACGTG 1 cut(s) 187
PmlI CACGTG 1 cut(s) 187
Ppu21I YACGTR 1 cut(s) 187
Psp124BI GAGCTC 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 278
PspCI CACGTG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 347, 462
PspPI GGNCC 2 cut(s) 288, 328
PspXI VCTCGAGB 1 cut(s) 400
PstNI CAGNNNCTG 2 cut(s) 285, 316
PsuI RGATCY 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 189
SacI GAGCTC 1 cut(s) 407
SapI GCTCTTC 1 cut(s) 545
SaqAI TTAA 1 cut(s) 75
Sau3AI GATC 2 cut(s) 165, 320
Sau96I GGNCC 2 cut(s) 288, 328
ScrFI CCNGG 1 cut(s) 280
SduI GDGCHC 1 cut(s) 407
SfaNI GCATC 3 cut(s) 20, 181, 465
Sfr274I CTCGAG 1 cut(s) 400
SfuI TTCGAA 1 cut(s) 146
SinI GGWCC 1 cut(s) 328
SlaI CTCGAG 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 400
SmoI CTYRAG 1 cut(s) 400
SseBI AGGCCT 1 cut(s) 389
SstI GAGCTC 1 cut(s) 407
StuI AGGCCT 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 449
TaiI ACGT 2 cut(s) 189, 203
TaqI TCGA 5 cut(s) 29, 146, 171, 401, 545
TauI GCSGC 8 cut(s) 38, 259, 306, 355, 431, 458, 461, 493
TfiI GAWTC 5 cut(s) 26, 148, 443, 523, 547
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 2 cut(s) 236, 290
TseI GCWGC 3 cut(s) 300, 306, 313
TspDTI ATGAA 4 cut(s) 17, 80, 405, 581
TspGWI ACGGA 2 cut(s) 56, 397
TspRI CASTG 2 cut(s) 236, 290
Van91I CCANNNNNTGG 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 328
XhoI CTCGAG 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.