Rmu_co8338391.1_g000002

F-box protein GID2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8338391.1
OG0015383
Physical Location & Seq
Forward (+)
578 .. 999
422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8338391.1_g000002.1.cds

Sequence Viewer

Length: 422 bp
atgaagcgtgggttttccatggcggaggagggcgataataagatgaagaagttaaaggtggaagaagaaggggaagacaagattgagcagcagcagcaagaagaggaggttgtcatcgttcaaggcccgggctttacgaatctggacgataatctgatattcgaggtgtttaagcacgttgatgccagaacactgggaatggcgtcgtgtgtgagcaagcagtggcacaagaccgcccaggacgagcggctctgggagctcatctgcacccgccagtgggctaacatcggctgcggtaatcagcagctgagatctgtcgtcctcgccctcggtggcttccggaggctccactccctctacatctggcctctcactaagtcttctccgtgctctttatcgtccttgtcttcttcttcttcttc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box

Protein Analysis

141

Amino Acids

15.95

Weight (kDa)

5.93

Isoelectric Point (pI)

70.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24210
fragaria_vesca FvH4_2g33690
malus_domestica MD08G1091700.v1.1 MD15G1075800.v1.1
prunus_persica Prupe.1G429300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0308861
rosa_laevigata RLG00000010612
rosa_multiflora Rmu_co8338391.1_g000002 Rmu_sc0004046.1_g000011
rosa_roxburghii Rroxscaffold_7G00159850
rosa_rugosa Rorug06G0368700
rosa_samantha Rh6AG480200 Rh6BG489700 Rh6CG495100 Rh6DG480500
rosa_wichuraiana Rw6G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 247
AccIII TCCGGA 1 cut(s) 339
AciI CCGC 5 cut(s) 23, 234, 247, 271, 294
AcyI GRCGYC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 276, 277
AgsI TTSAA 1 cut(s) 122
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 2 cut(s) 259, 307
AluI AGCT 2 cut(s) 259, 307
Alw21I GWGCWC 2 cut(s) 261, 392
AlwNI CAGNNNCTG 1 cut(s) 307
Ama87I CYCGRG 1 cut(s) 127
Aor13HI TCCGGA 1 cut(s) 339
AoxI GGCC 2 cut(s) 124, 365
ApeKI GCWGC 5 cut(s) 88, 91, 94, 291, 304
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 2 cut(s) 128, 129
AvaI CYCGRG 1 cut(s) 127
BanII GRGCYC 1 cut(s) 261
BbsI GAAGAC 3 cut(s) 81, 372, 399
Bbv12I GWGCWC 2 cut(s) 261, 392
BbvI GCAGC 5 cut(s) 100, 103, 106, 278, 316
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 2 cut(s) 128, 129
BglII AGATCT 1 cut(s) 311
BisI GCNGC 6 cut(s) 89, 92, 95, 248, 292, 305
BlsI GCNGC 6 cut(s) 90, 93, 96, 249, 293, 306
Bme1390I CCNGG 3 cut(s) 128, 129, 239
BmeT110I CYCGRG 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 347
BmrFI CCNGG 3 cut(s) 128, 129, 239
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 172
BmuI ACTGGG 1 cut(s) 203
BpiI GAAGAC 3 cut(s) 81, 372, 399
BpuMI CCSGG 2 cut(s) 128, 129
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 4 cut(s) 18, 127, 237, 328
BsaWI WCCGGW 1 cut(s) 339
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 277
Bse1I ACTGG 2 cut(s) 198, 274
BseAI TCCGGA 1 cut(s) 339
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 4 cut(s) 18, 127, 237, 328
BseLI CCNNNNNNNGG 2 cut(s) 276, 277
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 2 cut(s) 198, 274
BseRI GAGGAG 2 cut(s) 41, 119
BseXI GCAGC 5 cut(s) 100, 103, 106, 278, 316
BsgI GTGCAG 1 cut(s) 250
BshFI GGCC 2 cut(s) 126, 367
BsiHKAI GWGCWC 2 cut(s) 261, 392
BsiHKCI CYCGRG 1 cut(s) 127
BsiSI CCGG 2 cut(s) 128, 340
BslI CCNNNNNNNGG 2 cut(s) 276, 277
BsnI GGCC 2 cut(s) 126, 367
BsoBI CYCGRG 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 261, 392
Bsp13I TCCGGA 1 cut(s) 339
Bsp143I GATC 1 cut(s) 311
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 5 cut(s) 23, 234, 247, 271, 294
BspANI GGCC 2 cut(s) 126, 367
BspCNI CTCAG 1 cut(s) 300
BspEI TCCGGA 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 347
BsrBI CCGCTC 1 cut(s) 247
BsrI ACTGG 2 cut(s) 198, 274
BssECI CCNNGG 4 cut(s) 18, 127, 237, 328
BssMI GATC 1 cut(s) 311
BssNI GRCGYC 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 2 cut(s) 308, 375
BstDSI CCRYGG 1 cut(s) 18
BstKTI GATC 1 cut(s) 314
BstMBI GATC 1 cut(s) 311
BstMWI GCNNNNNNNGC 2 cut(s) 94, 256
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 3 cut(s) 126, 127, 237
BstV1I GCAGC 5 cut(s) 100, 103, 106, 278, 316
BstV2I GAAGAC 3 cut(s) 81, 372, 399
BstX2I RGATCY 1 cut(s) 311
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 1 cut(s) 311
BsuRI GGCC 2 cut(s) 126, 367
BtgI CCRYGG 1 cut(s) 18
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 3 cut(s) 191, 227, 281
Cac8I GCNNGC 1 cut(s) 218
CaiI CAGNNNCTG 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 125
Cfr9I CCCGGG 1 cut(s) 127
CseI GACGC 1 cut(s) 192
CviAII CATG 1 cut(s) 19
DdeI CTNAG 2 cut(s) 308, 375
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 261
Eco53kI GAGCTC 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 22
FaiI YATR 1 cut(s) 20
FatI CATG 1 cut(s) 18
FauI CCCGC 1 cut(s) 278
Fnu4HI GCNGC 6 cut(s) 89, 92, 95, 248, 292, 305
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 6 cut(s) 89, 92, 95, 248, 292, 305
GluI GCNGC 6 cut(s) 89, 92, 95, 248, 292, 305
HaeIII GGCC 2 cut(s) 126, 367
HapII CCGG 2 cut(s) 128, 340
HgaI GACGC 1 cut(s) 192
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 1 cut(s) 22
HinfI GANTC 1 cut(s) 139
HpaII CCGG 2 cut(s) 128, 340
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 2 cut(s) 143, 340
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 1 cut(s) 62
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 267
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 256
HpyF3I CTNAG 2 cut(s) 308, 375
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 1 cut(s) 22
Kpn2I TCCGGA 1 cut(s) 339
Kzo9I GATC 1 cut(s) 311
LmnI GCTCC 2 cut(s) 256, 351
Lsp1109I GCAGC 5 cut(s) 100, 103, 106, 278, 316
LweI GCATC 1 cut(s) 172
MaeII ACGT 1 cut(s) 177
MalI GATC 1 cut(s) 313
MbiI CCGCTC 1 cut(s) 247
MboI GATC 1 cut(s) 311
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 2 cut(s) 261, 392
MroI TCCGGA 1 cut(s) 339
MseI TTAA 2 cut(s) 53, 171
MslI CAYNNNNRTG 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 2 cut(s) 128, 340
MspR9I CCNGG 3 cut(s) 128, 129, 239
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 2 cut(s) 94, 256
NciI CCSGG 2 cut(s) 128, 129
NcoI CCATGG 1 cut(s) 18
NdeII GATC 1 cut(s) 311
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 347
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 6 cut(s) 90, 93, 96, 249, 293, 306
Psp124BI GAGCTC 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 1 cut(s) 125
PstNI CAGNNNCTG 1 cut(s) 307
PsuI RGATCY 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 180
SacI GAGCTC 1 cut(s) 261
SaqAI TTAA 2 cut(s) 53, 171
SatI GCNGC 6 cut(s) 89, 92, 95, 248, 292, 305
Sau3AI GATC 1 cut(s) 311
Sau96I GGNCC 1 cut(s) 125
ScrFI CCNGG 3 cut(s) 128, 129, 239
SduI GDGCHC 2 cut(s) 261, 392
SetI ASST 6 cut(s) 60, 111, 168, 180, 261, 309
SfaNI GCATC 1 cut(s) 172
SmaI CCCGGG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 180
SrfI GCCCGGGC 1 cut(s) 129
SsiI CCGC 5 cut(s) 23, 234, 247, 271, 294
SstI GAGCTC 1 cut(s) 261
StyD4I CCNGG 3 cut(s) 126, 127, 237
StyI CCWWGG 1 cut(s) 18
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 162
TauI GCSGC 1 cut(s) 250
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 2 cut(s) 53, 171
Tru9I TTAA 2 cut(s) 53, 171
TscAI CASTG 3 cut(s) 198, 227, 281
TseI GCWGC 5 cut(s) 88, 91, 94, 291, 304
TspDTI ATGAA 2 cut(s) 17, 59
TspGWI ACGGA 1 cut(s) 375
TspMI CCCGGG 1 cut(s) 127
TspRI CASTG 3 cut(s) 198, 227, 281
XmaI CCCGGG 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.