Rh6BG489700

F-box protein GID2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0015383
Physical Location & Seq
Reverse (-)
69349457 .. 69351641
2185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG489700.1

Sequence Viewer

Length: 600 bp
ATGAAGCGTGGGTTTTCCATGGCGGAGGAGGGCGATAATAAGATGAAGAAGTTAAAGGTGGAAGAAGAAGAAGGGGAAGACAAGATTGAGCAGCAGCAGCAGGAAGAGGAGGTTGTCATCGTTCAAGGCCCGGGCTTTACGAATCTGGACGATAATCTGATATTCGAGGTGTTTAAGCACGTTGATGCCAGAACACTGGGAATGGCGTCGTGTGTGAGCAAGCAGTGGCACAAGACCGCCCAGGACGAGCGGCTCTGGGAGCTCATCTGCACCCGCCACTGGGCTAACATCGGCTGCGGTAATCAGCAGCTGAGATCTGTCGTCCTCGCCCTCGGTGGCTTCCGGAGGCTCCACTCCCTCTACATCTGGCCTCTCACTAAGCCTTCTCCGTCCTCTTTATCGTCCTTGTCTTCTTCTTCTTCTTCTTCTTCGTCGGCTCCGTCGTCTTCTTCGTCGTCGTGGGCGGCTCCGCTGAAGCCGATGGTGGCCGCCAAGCCGCACGCTAGGTGGGGGAAGGATGAGGTGAATCTTTCGCTCTCGCTTCTGTCGATTCGGTTTTATGAGAAGATGAATTACAGCAACAGAGGCCCAGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box

Protein Analysis

199

Amino Acids

22.27

Weight (kDa)

8.42

Isoelectric Point (pI)

68.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 47 - 87 7.2e-08 F-box domain
F-box-like PF12937 53 - 91 1.2e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24210
fragaria_vesca FvH4_2g33690
malus_domestica MD08G1091700.v1.1 MD15G1075800.v1.1
prunus_persica Prupe.1G429300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0308861
rosa_laevigata RLG00000010612
rosa_multiflora Rmu_co8338391.1_g000002 Rmu_sc0004046.1_g000011
rosa_roxburghii Rroxscaffold_7G00159850
rosa_rugosa Rorug06G0368700
rosa_samantha Rh6AG480200 Rh6BG489700 Rh6CG495100 Rh6DG480500
rosa_wichuraiana Rw6G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 250
AccIII TCCGGA 1 cut(s) 342
AciI CCGC 9 cut(s) 23, 237, 250, 274, 297, 464, 470, 489, 497
AcoI YGGCCR 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 206
AfiI CCNNNNNNNGG 2 cut(s) 279, 280
AgsI TTSAA 1 cut(s) 125
AjnI CCWGG 2 cut(s) 240, 589
AluBI AGCT 2 cut(s) 262, 310
AluI AGCT 2 cut(s) 262, 310
Alw21I GWGCWC 1 cut(s) 264
AlwNI CAGNNNCTG 1 cut(s) 310
Ama87I CYCGRG 1 cut(s) 130
Aor13HI TCCGGA 1 cut(s) 342
AoxI GGCC 4 cut(s) 127, 368, 486, 586
ApeKI GCWGC 5 cut(s) 91, 94, 97, 294, 307
AspS9I GGNCC 2 cut(s) 128, 587
AsuC2I CCSGG 2 cut(s) 131, 132
AsuHPI GGTGA 1 cut(s) 535
AvaI CYCGRG 1 cut(s) 130
BanII GRGCYC 1 cut(s) 264
BarI GAAGNNNNNNTAC 2 cut(s) 557, 589
BbsI GAAGAC 3 cut(s) 84, 402, 438
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 5 cut(s) 103, 106, 109, 281, 319
BccI CCATC 1 cut(s) 475
BciT130I CCWGG 2 cut(s) 242, 591
BcnI CCSGG 2 cut(s) 131, 132
BfaI CTAG 1 cut(s) 504
BglII AGATCT 1 cut(s) 314
BisI GCNGC 9 cut(s) 92, 95, 98, 251, 295, 308, 465, 489, 497
BlsI GCNGC 9 cut(s) 93, 96, 99, 252, 296, 309, 466, 490, 498
Bme1390I CCNGG 4 cut(s) 131, 132, 242, 591
BmeT110I CYCGRG 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 128, 587
BmiI GGNNCC 3 cut(s) 350, 438, 468
BmrFI CCNGG 4 cut(s) 131, 132, 242, 591
BmrI ACTGGG 2 cut(s) 206, 289
BmsI GCATC 1 cut(s) 175
BmuI ACTGGG 2 cut(s) 206, 289
BpiI GAAGAC 3 cut(s) 84, 402, 438
BpuMI CCSGG 2 cut(s) 131, 132
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 5 cut(s) 18, 130, 240, 331, 589
BsaWI WCCGGW 1 cut(s) 342
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 280
Bse1I ACTGG 2 cut(s) 201, 284
BseAI TCCGGA 1 cut(s) 342
BseBI CCWGG 2 cut(s) 242, 591
BseDI CCNNGG 5 cut(s) 18, 130, 240, 331, 589
BseGI GGATG 1 cut(s) 523
BseLI CCNNNNNNNGG 2 cut(s) 279, 280
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 2 cut(s) 201, 284
BseRI GAGGAG 2 cut(s) 41, 122
BseXI GCAGC 5 cut(s) 103, 106, 109, 281, 319
BsgI GTGCAG 1 cut(s) 253
BshFI GGCC 4 cut(s) 129, 370, 488, 588
BsiHKAI GWGCWC 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 130
BsiSI CCGG 2 cut(s) 131, 343
BslI CCNNNNNNNGG 2 cut(s) 279, 280
BsnI GGCC 4 cut(s) 129, 370, 488, 588
BsoBI CYCGRG 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 264
Bsp13I TCCGGA 1 cut(s) 342
Bsp143I GATC 1 cut(s) 314
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 9 cut(s) 23, 237, 250, 274, 297, 464, 470, 489, 497
BspANI GGCC 4 cut(s) 129, 370, 488, 588
BspCNI CTCAG 1 cut(s) 303
BspEI TCCGGA 1 cut(s) 342
BspLI GGNNCC 3 cut(s) 350, 438, 468
BsrBI CCGCTC 1 cut(s) 250
BsrI ACTGG 2 cut(s) 201, 284
BssECI CCNNGG 5 cut(s) 18, 130, 240, 331, 589
BssMI GATC 1 cut(s) 314
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 242, 591
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 221, 501
BstDEI CTNAG 2 cut(s) 311, 378
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 523
BstKTI GATC 1 cut(s) 317
BstMBI GATC 1 cut(s) 314
BstMWI GCNNNNNNNGC 3 cut(s) 97, 259, 585
BstNI CCWGG 2 cut(s) 242, 591
BstSCI CCNGG 4 cut(s) 129, 130, 240, 589
BstV1I GCAGC 5 cut(s) 103, 106, 109, 281, 319
BstV2I GAAGAC 3 cut(s) 84, 402, 438
BstX2I RGATCY 1 cut(s) 314
BstXI CCANNNNNNTGG 1 cut(s) 196
BstYI RGATCY 1 cut(s) 314
BsuRI GGCC 4 cut(s) 129, 370, 488, 588
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 523
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 3 cut(s) 194, 230, 277
Cac8I GCNNGC 2 cut(s) 221, 501
CaiI CAGNNNCTG 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 128, 587
Cfr9I CCCGGG 1 cut(s) 130
CseI GACGC 1 cut(s) 195
CviAII CATG 1 cut(s) 19
DdeI CTNAG 2 cut(s) 311, 378
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
EaeI YGGCCR 1 cut(s) 486
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 264
Eco53kI GAGCTC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 262
EcoRII CCWGG 2 cut(s) 240, 589
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 22
FaiI YATR 2 cut(s) 20, 561
FatI CATG 1 cut(s) 18
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 9 cut(s) 92, 95, 98, 251, 295, 308, 465, 489, 497
FokI GGATG 1 cut(s) 530
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 9 cut(s) 92, 95, 98, 251, 295, 308, 465, 489, 497
FspBI CTAG 1 cut(s) 504
GluI GCNGC 9 cut(s) 92, 95, 98, 251, 295, 308, 465, 489, 497
HaeIII GGCC 4 cut(s) 129, 370, 488, 588
HapII CCGG 2 cut(s) 131, 343
HgaI GACGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 1 cut(s) 22
HinfI GANTC 3 cut(s) 142, 526, 550
HpaII CCGG 2 cut(s) 131, 343
HphI GGTGA 1 cut(s) 535
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 2 cut(s) 146, 343
Hpy99I CGWCG 5 cut(s) 211, 436, 445, 457, 460
HpyAV CCTTC 3 cut(s) 65, 393, 508
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 259, 585
HpyF3I CTNAG 2 cut(s) 311, 378
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 1 cut(s) 22
Kpn2I TCCGGA 1 cut(s) 342
Kzo9I GATC 1 cut(s) 314
LmnI GCTCC 4 cut(s) 259, 354, 442, 472
Lsp1109I GCAGC 5 cut(s) 103, 106, 109, 281, 319
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 504
MaeII ACGT 1 cut(s) 180
MalI GATC 1 cut(s) 316
MbiI CCGCTC 1 cut(s) 250
MboI GATC 1 cut(s) 314
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 1 cut(s) 571
MroI TCCGGA 1 cut(s) 342
MseI TTAA 2 cut(s) 53, 174
MslI CAYNNNNRTG 1 cut(s) 183
MspA1I CMGCKG 2 cut(s) 310, 472
MspI CCGG 2 cut(s) 131, 343
MspR9I CCNGG 4 cut(s) 131, 132, 242, 591
MvaI CCWGG 2 cut(s) 242, 591
MwoI GCNNNNNNNGC 3 cut(s) 97, 259, 585
NciI CCSGG 2 cut(s) 131, 132
NcoI CCATGG 1 cut(s) 18
NdeII GATC 1 cut(s) 314
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 3 cut(s) 350, 438, 468
PcsI WCGNNNNNNNCGW 4 cut(s) 437, 440, 449, 545
PfeI GAWTC 3 cut(s) 142, 526, 550
PkrI GCNGC 9 cut(s) 93, 96, 99, 252, 296, 309, 466, 490, 498
Psp124BI GAGCTC 1 cut(s) 264
Psp6I CCWGG 2 cut(s) 240, 589
PspGI CCWGG 2 cut(s) 240, 589
PspN4I GGNNCC 3 cut(s) 350, 438, 468
PspPI GGNCC 2 cut(s) 128, 587
PstNI CAGNNNCTG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 314
PvuII CAGCTG 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 183
SacI GAGCTC 1 cut(s) 264
SaqAI TTAA 2 cut(s) 53, 174
SatI GCNGC 9 cut(s) 92, 95, 98, 251, 295, 308, 465, 489, 497
Sau3AI GATC 1 cut(s) 314
Sau96I GGNCC 2 cut(s) 128, 587
ScrFI CCNGG 4 cut(s) 131, 132, 242, 591
SduI GDGCHC 1 cut(s) 264
SetI ASST 8 cut(s) 60, 114, 171, 183, 264, 312, 509, 525
SfaNI GCATC 1 cut(s) 175
SmaI CCCGGG 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 183
SrfI GCCCGGGC 1 cut(s) 132
Sse9I AATT 1 cut(s) 571
SsiI CCGC 9 cut(s) 23, 237, 250, 274, 297, 464, 470, 489, 497
SspMI CTAG 1 cut(s) 504
SstI GAGCTC 1 cut(s) 264
StyD4I CCNGG 4 cut(s) 129, 130, 240, 589
StyI CCWWGG 1 cut(s) 18
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 165, 548
TasI AATT 1 cut(s) 571
TauI GCSGC 4 cut(s) 253, 467, 491, 499
TfiI GAWTC 3 cut(s) 142, 526, 550
Tru1I TTAA 2 cut(s) 53, 174
Tru9I TTAA 2 cut(s) 53, 174
TscAI CASTG 3 cut(s) 201, 230, 284
TseI GCWGC 5 cut(s) 91, 94, 97, 294, 307
TspDTI ATGAA 3 cut(s) 17, 59, 584
TspGWI ACGGA 2 cut(s) 378, 429
TspMI CCCGGG 1 cut(s) 130
TspRI CASTG 3 cut(s) 201, 230, 284
XmaI CCCGGG 1 cut(s) 130
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.