FvH4_2g33690

F-box protein GID2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015383
Physical Location & Seq
Forward (+)
25196957 .. 25197529
573 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33690.t1

Sequence Viewer

Length: 573 bp
ATGAAGCGTGGGTTTGCTTCCATGGCCGAGGAGGACGATTACAAGATGAAGAAGCTAAAGGTCGAGGAAGACGAGATCGAACCAGAGAAAGAAGAAGAGGGTGTGATCGTTGAAGGACCAGGGTTTACGAGTCTGGATGATAATCTGATATTCGAGGTGTTTAAGCACGTTGATGCCAGAACACTAGGGATGGTGTCGTGTGTGAGCAAACAGTGGCACAAGACGGCCCAGGACGAGCGGCTCTGGGAGCTCATGTGTACTCGTCACTGGGTTAACATCGGCTGCGGTAATCAGCAGCTGAGATCTGTCGTTCTTGCCCTCGGTGGCTTCCGAAGGCTCCACTCGCTCTACATCTGGCCTTTCACTAAGCCTCAGTCCTCTCCTTCATCGTCTTCCTCTGCTTCTGCTTCTTCTGCTCCTTCGTCACCCTGGGCGGCGGCTCCGCTGAAGCCGATGATGGCCGCGAAGCCGCACGCTAGGTGGGGGAAGGATGAGGTGAATCTCTCGCTGTCGCTCTTGTCGATTCGGTTTTACGAGAAGATGAATTACAGCAACCGGAGCCAAGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box

Protein Analysis

191

Amino Acids

21.5

Weight (kDa)

7.73

Isoelectric Point (pI)

69.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 43 - 83 2.4e-07 F-box domain
F-box-like PF12937 49 - 87 1.6e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24210
fragaria_vesca FvH4_2g33690
malus_domestica MD08G1091700.v1.1 MD15G1075800.v1.1
prunus_persica Prupe.1G429300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0308861
rosa_laevigata RLG00000010612
rosa_multiflora Rmu_co8338391.1_g000002 Rmu_sc0004046.1_g000011
rosa_roxburghii Rroxscaffold_7G00159850
rosa_rugosa Rorug06G0368700
rosa_samantha Rh6AG480200 Rh6BG489700 Rh6CG495100 Rh6DG480500
rosa_wichuraiana Rw6G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 238
AccII CGCG 1 cut(s) 464
AciI CCGC 7 cut(s) 238, 285, 434, 437, 443, 462, 470
AcoI YGGCCR 2 cut(s) 24, 459
AcuI CTGAAG 1 cut(s) 467
AfaI GTAC 1 cut(s) 259
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 3 cut(s) 118, 228, 428
AluBI AGCT 3 cut(s) 55, 250, 298
AluI AGCT 3 cut(s) 55, 250, 298
Alw21I GWGCWC 1 cut(s) 252
AlwNI CAGNNNCTG 1 cut(s) 298
AoxI GGCC 4 cut(s) 24, 225, 356, 459
ApeKI GCWGC 2 cut(s) 282, 295
AspS9I GGNCC 2 cut(s) 116, 226
AsuHPI GGTGA 2 cut(s) 417, 508
AvaII GGWCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 252
BarI GAAGNNNNNNTAC 2 cut(s) 530, 562
BbsI GAAGAC 2 cut(s) 75, 384
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 269, 307
BccI CCATC 2 cut(s) 184, 451
BceAI ACGGC 1 cut(s) 240
BciT130I CCWGG 3 cut(s) 120, 230, 430
BfaI CTAG 2 cut(s) 185, 477
BglII AGATCT 1 cut(s) 302
BisI GCNGC 7 cut(s) 239, 283, 296, 435, 438, 462, 470
BlsI GCNGC 7 cut(s) 240, 284, 297, 436, 439, 463, 471
Bme1390I CCNGG 3 cut(s) 120, 230, 430
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 116, 226
BmiI GGNNCC 3 cut(s) 338, 441, 560
BmrFI CCNGG 3 cut(s) 120, 230, 430
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 163
BmuI ACTGGG 1 cut(s) 277
BpiI GAAGAC 2 cut(s) 75, 384
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 8 cut(s) 21, 27, 119, 228, 319, 428, 429, 562
BsaWI WCCGGW 1 cut(s) 555
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bse1I ACTGG 1 cut(s) 272
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 3 cut(s) 120, 230, 430
BseDI CCNNGG 8 cut(s) 21, 27, 119, 228, 319, 428, 429, 562
BseGI GGATG 3 cut(s) 142, 195, 496
BseJI GATNNNNATC 1 cut(s) 141
BseMII CTCAG 2 cut(s) 290, 386
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 2 cut(s) 269, 307
Bsh1236I CGCG 1 cut(s) 464
BshFI GGCC 4 cut(s) 26, 227, 358, 461
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 556
BsnI GGCC 4 cut(s) 26, 227, 358, 461
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 3 cut(s) 75, 105, 302
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 7 cut(s) 238, 285, 434, 437, 443, 462, 470
BspANI GGCC 4 cut(s) 26, 227, 358, 461
BspCNI CTCAG 2 cut(s) 291, 385
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 3 cut(s) 338, 441, 560
BsrBI CCGCTC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 8 cut(s) 21, 27, 119, 228, 319, 428, 429, 562
BssMI GATC 3 cut(s) 75, 105, 302
BssT1I CCWWGG 2 cut(s) 21, 562
Bst2UI CCWGG 3 cut(s) 120, 230, 430
Bst4CI ACNGT 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 3 cut(s) 299, 366, 372
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 3 cut(s) 142, 195, 496
BstFNI CGCG 1 cut(s) 464
BstKTI GATC 3 cut(s) 78, 108, 305
BstMBI GATC 3 cut(s) 75, 105, 302
BstMWI GCNNNNNNNGC 5 cut(s) 23, 247, 343, 413, 558
BstNI CCWGG 3 cut(s) 120, 230, 430
BstSCI CCNGG 3 cut(s) 118, 228, 428
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 2 cut(s) 269, 307
BstV2I GAAGAC 2 cut(s) 75, 384
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BsuRI GGCC 4 cut(s) 26, 227, 358, 461
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 3 cut(s) 142, 195, 496
BtsIMutI CAGTG 2 cut(s) 218, 265
Cac8I GCNNGC 1 cut(s) 474
CaiI CAGNNNCTG 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 116, 226
Csp6I GTAC 1 cut(s) 258
CviAII CATG 2 cut(s) 22, 253
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 3 cut(s) 299, 366, 372
DpnI GATC 3 cut(s) 77, 107, 304
DpnII GATC 3 cut(s) 75, 105, 302
EaeI YGGCCR 2 cut(s) 24, 459
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 250
Eco130I CCWWGG 2 cut(s) 21, 562
Eco24I GRGCYC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 467
EcoICRI GAGCTC 1 cut(s) 250
EcoRII CCWGG 3 cut(s) 118, 228, 428
EcoT14I CCWWGG 2 cut(s) 21, 562
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 2 cut(s) 21, 562
FaeI CATG 2 cut(s) 25, 256
FaiI YATR 2 cut(s) 23, 254
FatI CATG 2 cut(s) 21, 252
Fnu4HI GCNGC 7 cut(s) 239, 283, 296, 435, 438, 462, 470
FokI GGATG 3 cut(s) 149, 202, 503
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 7 cut(s) 239, 283, 296, 435, 438, 462, 470
FspBI CTAG 2 cut(s) 185, 477
GluI GCNGC 7 cut(s) 239, 283, 296, 435, 438, 462, 470
HaeIII GGCC 4 cut(s) 26, 227, 358, 461
HapII CCGG 1 cut(s) 556
Hin1II CATG 2 cut(s) 25, 256
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 3 cut(s) 130, 499, 523
HpaI GTTAAC 1 cut(s) 274
HpaII CCGG 1 cut(s) 556
HphI GGTGA 2 cut(s) 417, 508
Hpy166II GTNNAC 3 cut(s) 126, 258, 274
Hpy188I TCNGA 2 cut(s) 147, 332
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 3 cut(s) 126, 258, 274
HpyAV CCTTC 5 cut(s) 107, 327, 393, 429, 481
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4IV ACGT 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 247, 343, 413, 558
HpyF3I CTNAG 3 cut(s) 299, 366, 372
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 2 cut(s) 25, 256
KspAI GTTAAC 1 cut(s) 274
Kzo9I GATC 3 cut(s) 75, 105, 302
LmnI GCTCC 5 cut(s) 247, 342, 421, 445, 558
Lsp1109I GCAGC 2 cut(s) 269, 307
LweI GCATC 1 cut(s) 163
MaeI CTAG 2 cut(s) 185, 477
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 263, 423
MalI GATC 3 cut(s) 77, 107, 304
MbiI CCGCTC 1 cut(s) 238
MboI GATC 3 cut(s) 75, 105, 302
MboII GAAGA 7 cut(s) 61, 80, 104, 107, 384, 402, 550
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 544
MlyI GAGTC 1 cut(s) 139
MseI TTAA 2 cut(s) 162, 273
MslI CAYNNNNRTG 1 cut(s) 171
MspA1I CMGCKG 2 cut(s) 298, 445
MspI CCGG 1 cut(s) 556
MspR9I CCNGG 3 cut(s) 120, 230, 430
MvaI CCWGG 3 cut(s) 120, 230, 430
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 5 cut(s) 23, 247, 343, 413, 558
NcoI CCATGG 1 cut(s) 21
NdeII GATC 3 cut(s) 75, 105, 302
NlaIII CATG 2 cut(s) 25, 256
NlaIV GGNNCC 3 cut(s) 338, 441, 560
NmeAIII GCCGAG 1 cut(s) 52
NmuCI GTSAC 2 cut(s) 263, 423
PasI CCCWGGG 1 cut(s) 429
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 518
PfeI GAWTC 2 cut(s) 499, 523
PkrI GCNGC 7 cut(s) 240, 284, 297, 436, 439, 463, 471
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 3 cut(s) 118, 228, 428
PspGI CCWGG 3 cut(s) 118, 228, 428
PspN4I GGNNCC 3 cut(s) 338, 441, 560
PspPI GGNCC 2 cut(s) 116, 226
PstNI CAGNNNCTG 1 cut(s) 298
PsuI RGATCY 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 171
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 162, 273
SatI GCNGC 7 cut(s) 239, 283, 296, 435, 438, 462, 470
Sau3AI GATC 3 cut(s) 75, 105, 302
Sau96I GGNCC 2 cut(s) 116, 226
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 3 cut(s) 120, 230, 430
SduI GDGCHC 1 cut(s) 252
SetI ASST 8 cut(s) 57, 63, 159, 171, 252, 300, 482, 498
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 1 cut(s) 544
SsiI CCGC 7 cut(s) 238, 285, 434, 437, 443, 462, 470
SspMI CTAG 2 cut(s) 185, 477
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 3 cut(s) 118, 228, 428
StyI CCWWGG 2 cut(s) 21, 562
TaaI ACNGT 1 cut(s) 213
TaiI ACGT 1 cut(s) 171
TaqI TCGA 4 cut(s) 63, 78, 153, 521
TasI AATT 1 cut(s) 544
TatI WGTACW 1 cut(s) 257
TauI GCSGC 5 cut(s) 241, 437, 440, 464, 472
TfiI GAWTC 2 cut(s) 499, 523
Tru1I TTAA 2 cut(s) 162, 273
Tru9I TTAA 2 cut(s) 162, 273
TscAI CASTG 2 cut(s) 218, 272
TseFI GTSAC 2 cut(s) 263, 423
TseI GCWGC 2 cut(s) 282, 295
Tsp45I GTSAC 2 cut(s) 263, 423
TspDTI ATGAA 4 cut(s) 17, 62, 375, 557
TspRI CASTG 2 cut(s) 218, 272
VpaK11BI GGWCC 1 cut(s) 116
XspI CTAG 2 cut(s) 185, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.