Rh6DG480500

F-box protein GID2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015383
Physical Location & Seq
Reverse (-)
64502809 .. 64505133
2325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG480500.1

Sequence Viewer

Length: 594 bp
ATGAAGCGTGGGTTTTCCATGGCGGAGGAGGGCGATAATAAGATGAAGAAGTTAAAGGTGGAAGAAGAAGAAGGGGAAGACAAGATTGAGCAGCAGCAGCAAGAAGAGGAGGTTGTCATCGTTCAAGGCCCGGGCTTTACGAATCTGGACGATAATCTGATATTCGAGGTGTTTAAGCACGTTGATGCCAGAACACTGGGAATGGCGTCGTGTGTGAGCAAGCAGTGGCACAAGACCGCCCAGGACGAGCGGCTCTGGGAGCTCATCTGCACCCGCCACTGGGCTAACATCGGCTGCGGTAATCAGCAGCTGAGATCTGTCGTCCTCGCCCTCGGTGGCTTCCGGAGGCTCCACTCCCTCTACATCTGGCCTCTCACTAGGCCTTCTCCGTCCTCTTTATCGTCCTTGTCTTCTTCTTCTTCTTCGTCGGCTCCGTCGTCTTCTTCGTCGTCGTGGGCGGCTCCGCTGAAGCCGGTGGTGGCCGCCAAGCCGCACGCTAGGTGGGGGAAGGATGAGGTGAATCTTTCGCTCTCGCTTCTGTCGATTCGGTTTTATGAGAAGATGAATTACAGCAACAGAGGCCCAGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box

Protein Analysis

197

Amino Acids

22.09

Weight (kDa)

8.43

Isoelectric Point (pI)

70.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 47 - 87 7.1e-08 F-box domain
F-box-like PF12937 53 - 91 1.1e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24210
fragaria_vesca FvH4_2g33690
malus_domestica MD08G1091700.v1.1 MD15G1075800.v1.1
prunus_persica Prupe.1G429300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0308861
rosa_laevigata RLG00000010612
rosa_multiflora Rmu_co8338391.1_g000002 Rmu_sc0004046.1_g000011
rosa_roxburghii Rroxscaffold_7G00159850
rosa_rugosa Rorug06G0368700
rosa_samantha Rh6AG480200 Rh6BG489700 Rh6CG495100 Rh6DG480500
rosa_wichuraiana Rw6G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 250
AccIII TCCGGA 1 cut(s) 342
AciI CCGC 9 cut(s) 23, 237, 250, 274, 297, 458, 464, 483, 491
AcoI YGGCCR 1 cut(s) 480
AcuI CTGAAG 1 cut(s) 488
AcyI GRCGYC 1 cut(s) 206
AfiI CCNNNNNNNGG 2 cut(s) 279, 280
AgsI TTSAA 1 cut(s) 125
AjnI CCWGG 2 cut(s) 240, 583
AluBI AGCT 2 cut(s) 262, 310
AluI AGCT 2 cut(s) 262, 310
Alw21I GWGCWC 1 cut(s) 264
AlwNI CAGNNNCTG 1 cut(s) 310
Ama87I CYCGRG 1 cut(s) 130
Aor13HI TCCGGA 1 cut(s) 342
AoxI GGCC 5 cut(s) 127, 368, 380, 480, 580
ApeKI GCWGC 5 cut(s) 91, 94, 97, 294, 307
AspS9I GGNCC 2 cut(s) 128, 581
AsuC2I CCSGG 2 cut(s) 131, 132
AsuHPI GGTGA 1 cut(s) 529
AvaI CYCGRG 1 cut(s) 130
BanII GRGCYC 1 cut(s) 264
BarI GAAGNNNNNNTAC 2 cut(s) 551, 583
BbsI GAAGAC 3 cut(s) 84, 402, 432
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 5 cut(s) 103, 106, 109, 281, 319
BciT130I CCWGG 2 cut(s) 242, 585
BcnI CCSGG 2 cut(s) 131, 132
BfaI CTAG 2 cut(s) 378, 498
BglII AGATCT 1 cut(s) 314
BisI GCNGC 9 cut(s) 92, 95, 98, 251, 295, 308, 459, 483, 491
BlsI GCNGC 9 cut(s) 93, 96, 99, 252, 296, 309, 460, 484, 492
Bme1390I CCNGG 4 cut(s) 131, 132, 242, 585
BmeT110I CYCGRG 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 128, 581
BmiI GGNNCC 3 cut(s) 350, 432, 462
BmrFI CCNGG 4 cut(s) 131, 132, 242, 585
BmrI ACTGGG 2 cut(s) 206, 289
BmsI GCATC 1 cut(s) 175
BmuI ACTGGG 2 cut(s) 206, 289
BpiI GAAGAC 3 cut(s) 84, 402, 432
BpuMI CCSGG 2 cut(s) 131, 132
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 5 cut(s) 18, 130, 240, 331, 583
BsaWI WCCGGW 1 cut(s) 342
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 280
Bse118I RCCGGY 1 cut(s) 472
Bse1I ACTGG 2 cut(s) 201, 284
BseAI TCCGGA 1 cut(s) 342
BseBI CCWGG 2 cut(s) 242, 585
BseDI CCNNGG 5 cut(s) 18, 130, 240, 331, 583
BseGI GGATG 1 cut(s) 517
BseLI CCNNNNNNNGG 2 cut(s) 279, 280
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 2 cut(s) 201, 284
BseRI GAGGAG 2 cut(s) 41, 122
BseXI GCAGC 5 cut(s) 103, 106, 109, 281, 319
BsgI GTGCAG 1 cut(s) 253
BshFI GGCC 5 cut(s) 129, 370, 382, 482, 582
BsiHKAI GWGCWC 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 130
BsiSI CCGG 3 cut(s) 131, 343, 473
BslI CCNNNNNNNGG 2 cut(s) 279, 280
BsnI GGCC 5 cut(s) 129, 370, 382, 482, 582
BsoBI CYCGRG 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 264
Bsp13I TCCGGA 1 cut(s) 342
Bsp143I GATC 1 cut(s) 314
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 9 cut(s) 23, 237, 250, 274, 297, 458, 464, 483, 491
BspANI GGCC 5 cut(s) 129, 370, 382, 482, 582
BspCNI CTCAG 1 cut(s) 303
BspEI TCCGGA 1 cut(s) 342
BspLI GGNNCC 3 cut(s) 350, 432, 462
BsrBI CCGCTC 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 472
BsrI ACTGG 2 cut(s) 201, 284
BssAI RCCGGY 1 cut(s) 472
BssECI CCNNGG 5 cut(s) 18, 130, 240, 331, 583
BssMI GATC 1 cut(s) 314
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 242, 585
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 221, 495
BstDEI CTNAG 1 cut(s) 311
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 517
BstKTI GATC 1 cut(s) 317
BstMBI GATC 1 cut(s) 314
BstMWI GCNNNNNNNGC 3 cut(s) 97, 259, 579
BstNI CCWGG 2 cut(s) 242, 585
BstSCI CCNGG 4 cut(s) 129, 130, 240, 583
BstV1I GCAGC 5 cut(s) 103, 106, 109, 281, 319
BstV2I GAAGAC 3 cut(s) 84, 402, 432
BstX2I RGATCY 1 cut(s) 314
BstXI CCANNNNNNTGG 1 cut(s) 196
BstYI RGATCY 1 cut(s) 314
BsuRI GGCC 5 cut(s) 129, 370, 382, 482, 582
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 517
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 3 cut(s) 194, 230, 277
Cac8I GCNNGC 2 cut(s) 221, 495
CaiI CAGNNNCTG 1 cut(s) 310
Cfr10I RCCGGY 1 cut(s) 472
Cfr13I GGNCC 2 cut(s) 128, 581
Cfr9I CCCGGG 1 cut(s) 130
CseI GACGC 1 cut(s) 195
CviAII CATG 1 cut(s) 19
DdeI CTNAG 1 cut(s) 311
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 18
Eco147I AGGCCT 1 cut(s) 382
Eco24I GRGCYC 1 cut(s) 264
Eco53kI GAGCTC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 262
EcoRII CCWGG 2 cut(s) 240, 583
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 22
FaiI YATR 2 cut(s) 20, 555
FatI CATG 1 cut(s) 18
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 9 cut(s) 92, 95, 98, 251, 295, 308, 459, 483, 491
FokI GGATG 1 cut(s) 524
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 9 cut(s) 92, 95, 98, 251, 295, 308, 459, 483, 491
FspBI CTAG 2 cut(s) 378, 498
GluI GCNGC 9 cut(s) 92, 95, 98, 251, 295, 308, 459, 483, 491
HaeIII GGCC 5 cut(s) 129, 370, 382, 482, 582
HapII CCGG 3 cut(s) 131, 343, 473
HgaI GACGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 1 cut(s) 22
HinfI GANTC 3 cut(s) 142, 520, 544
HpaII CCGG 3 cut(s) 131, 343, 473
HphI GGTGA 1 cut(s) 529
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 2 cut(s) 146, 343
Hpy99I CGWCG 5 cut(s) 211, 430, 439, 451, 454
HpyAV CCTTC 3 cut(s) 65, 393, 502
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 259, 579
HpyF3I CTNAG 1 cut(s) 311
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 1 cut(s) 22
Kpn2I TCCGGA 1 cut(s) 342
Kzo9I GATC 1 cut(s) 314
LmnI GCTCC 4 cut(s) 259, 354, 436, 466
Lsp1109I GCAGC 5 cut(s) 103, 106, 109, 281, 319
LweI GCATC 1 cut(s) 175
MaeI CTAG 2 cut(s) 378, 498
MaeII ACGT 1 cut(s) 180
MalI GATC 1 cut(s) 316
MbiI CCGCTC 1 cut(s) 250
MboI GATC 1 cut(s) 314
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 1 cut(s) 565
MroI TCCGGA 1 cut(s) 342
MseI TTAA 2 cut(s) 53, 174
MslI CAYNNNNRTG 1 cut(s) 183
MspA1I CMGCKG 2 cut(s) 310, 466
MspI CCGG 3 cut(s) 131, 343, 473
MspR9I CCNGG 4 cut(s) 131, 132, 242, 585
MvaI CCWGG 2 cut(s) 242, 585
MwoI GCNNNNNNNGC 3 cut(s) 97, 259, 579
NciI CCSGG 2 cut(s) 131, 132
NcoI CCATGG 1 cut(s) 18
NdeII GATC 1 cut(s) 314
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 3 cut(s) 350, 432, 462
PceI AGGCCT 1 cut(s) 382
PcsI WCGNNNNNNNCGW 4 cut(s) 431, 434, 443, 539
PfeI GAWTC 3 cut(s) 142, 520, 544
PkrI GCNGC 9 cut(s) 93, 96, 99, 252, 296, 309, 460, 484, 492
Psp124BI GAGCTC 1 cut(s) 264
Psp6I CCWGG 2 cut(s) 240, 583
PspGI CCWGG 2 cut(s) 240, 583
PspN4I GGNNCC 3 cut(s) 350, 432, 462
PspPI GGNCC 2 cut(s) 128, 581
PstNI CAGNNNCTG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 314
PvuII CAGCTG 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 183
SacI GAGCTC 1 cut(s) 264
SaqAI TTAA 2 cut(s) 53, 174
SatI GCNGC 9 cut(s) 92, 95, 98, 251, 295, 308, 459, 483, 491
Sau3AI GATC 1 cut(s) 314
Sau96I GGNCC 2 cut(s) 128, 581
ScrFI CCNGG 4 cut(s) 131, 132, 242, 585
SduI GDGCHC 1 cut(s) 264
SetI ASST 8 cut(s) 60, 114, 171, 183, 264, 312, 503, 519
SfaNI GCATC 1 cut(s) 175
SmaI CCCGGG 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 183
SrfI GCCCGGGC 1 cut(s) 132
Sse9I AATT 1 cut(s) 565
SseBI AGGCCT 1 cut(s) 382
SsiI CCGC 9 cut(s) 23, 237, 250, 274, 297, 458, 464, 483, 491
SspMI CTAG 2 cut(s) 378, 498
SstI GAGCTC 1 cut(s) 264
StuI AGGCCT 1 cut(s) 382
StyD4I CCNGG 4 cut(s) 129, 130, 240, 583
StyI CCWWGG 1 cut(s) 18
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 165, 542
TasI AATT 1 cut(s) 565
TauI GCSGC 4 cut(s) 253, 461, 485, 493
TfiI GAWTC 3 cut(s) 142, 520, 544
Tru1I TTAA 2 cut(s) 53, 174
Tru9I TTAA 2 cut(s) 53, 174
TscAI CASTG 3 cut(s) 201, 230, 284
TseI GCWGC 5 cut(s) 91, 94, 97, 294, 307
TspDTI ATGAA 3 cut(s) 17, 59, 578
TspGWI ACGGA 2 cut(s) 378, 423
TspMI CCCGGG 1 cut(s) 130
TspRI CASTG 3 cut(s) 201, 230, 284
XmaI CCCGGG 1 cut(s) 130
XspI CTAG 2 cut(s) 378, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.