Rh6AG480200

F-box protein GID2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015383
Physical Location & Seq
Reverse (-)
66156878 .. 66158296
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG480200.1

Sequence Viewer

Length: 561 bp
ATGAAGCGTGGGTTGTCCATGGCGGAGGAGGGCGATAATAAGATGAAGAAGTTAAAGGTGGAAGAAGAAGAGGAAGACAAGATTGAGCAGCAGCAAGAAGAGGAGGTTGTCATCGTTCAAGGCCCGGGCTTTACGAATCTGGACGATAATCTGATATTCGAGGTGTTTAAGCACGTTGATGCCAGAACACTGGGAATGGCGTCGTGTGTGAGCAAGCAGTGGCACAAGACCGCCCAGGACGAGCGGCTCTGGGAGCTCATCTGCACCCGCCACTGGGCTAACATCGGCTGCGGTAATCAGCAGCTGAGATCTGTCGTCCTCGCCCTCGGTGGCTTCCGGAGGCTCCACTCCCTCTACATCTGGCCTCTCACTAAGCCTTCTCCGTCCTCTCTATCGTCCTTGTCTTCTTCGTCGTCGTCGTGGGCGGCTCCGCTGAAGCCGATGGTGGCCGCCAAGCCGCACGCTAGGTGGGGGAAGGATGAGGTGAATCTTTCGCTCTCGCTTCTCTCGATTCGGTTTTATGAGAAGATGAATTACAGCAACAGAGGCCCAGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box

Protein Analysis

186

Amino Acids

21.1

Weight (kDa)

8.42

Isoelectric Point (pI)

63.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 45 - 85 6.4e-08 F-box domain
F-box-like PF12937 51 - 89 1e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24210
fragaria_vesca FvH4_2g33690
malus_domestica MD08G1091700.v1.1 MD15G1075800.v1.1
prunus_persica Prupe.1G429300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0308861
rosa_laevigata RLG00000010612
rosa_multiflora Rmu_co8338391.1_g000002 Rmu_sc0004046.1_g000011
rosa_roxburghii Rroxscaffold_7G00159850
rosa_rugosa Rorug06G0368700
rosa_samantha Rh6AG480200 Rh6BG489700 Rh6CG495100 Rh6DG480500
rosa_wichuraiana Rw6G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 244
AccIII TCCGGA 1 cut(s) 336
AciI CCGC 9 cut(s) 23, 231, 244, 268, 291, 425, 431, 450, 458
AcoI YGGCCR 1 cut(s) 447
AcuI CTGAAG 1 cut(s) 455
AcyI GRCGYC 1 cut(s) 200
AfiI CCNNNNNNNGG 2 cut(s) 273, 274
AgsI TTSAA 1 cut(s) 119
AjnI CCWGG 2 cut(s) 234, 550
AluBI AGCT 2 cut(s) 256, 304
AluI AGCT 2 cut(s) 256, 304
Alw21I GWGCWC 1 cut(s) 258
AlwNI CAGNNNCTG 1 cut(s) 304
Ama87I CYCGRG 1 cut(s) 124
Aor13HI TCCGGA 1 cut(s) 336
AoxI GGCC 4 cut(s) 121, 362, 447, 547
ApeKI GCWGC 4 cut(s) 88, 91, 288, 301
AspS9I GGNCC 2 cut(s) 122, 548
AsuC2I CCSGG 2 cut(s) 125, 126
AsuHPI GGTGA 1 cut(s) 496
AvaI CYCGRG 1 cut(s) 124
BanII GRGCYC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 518, 550
BbsI GAAGAC 2 cut(s) 81, 396
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 4 cut(s) 100, 103, 275, 313
BccI CCATC 1 cut(s) 436
BciT130I CCWGG 2 cut(s) 236, 552
BcnI CCSGG 2 cut(s) 125, 126
BfaI CTAG 1 cut(s) 465
BglII AGATCT 1 cut(s) 308
BisI GCNGC 8 cut(s) 89, 92, 245, 289, 302, 426, 450, 458
BlsI GCNGC 8 cut(s) 90, 93, 246, 290, 303, 427, 451, 459
Bme1390I CCNGG 4 cut(s) 125, 126, 236, 552
BmeT110I CYCGRG 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 122, 548
BmiI GGNNCC 2 cut(s) 344, 429
BmrFI CCNGG 4 cut(s) 125, 126, 236, 552
BmrI ACTGGG 2 cut(s) 200, 283
BmsI GCATC 1 cut(s) 169
BmuI ACTGGG 2 cut(s) 200, 283
BpiI GAAGAC 2 cut(s) 81, 396
BpuMI CCSGG 2 cut(s) 125, 126
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 5 cut(s) 18, 124, 234, 325, 550
BsaWI WCCGGW 1 cut(s) 336
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 274
Bse1I ACTGG 2 cut(s) 195, 278
BseAI TCCGGA 1 cut(s) 336
BseBI CCWGG 2 cut(s) 236, 552
BseDI CCNNGG 5 cut(s) 18, 124, 234, 325, 550
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 2 cut(s) 273, 274
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 2 cut(s) 195, 278
BseRI GAGGAG 2 cut(s) 41, 116
BseXI GCAGC 4 cut(s) 100, 103, 275, 313
BsgI GTGCAG 1 cut(s) 247
BshFI GGCC 4 cut(s) 123, 364, 449, 549
BsiHKAI GWGCWC 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 2 cut(s) 125, 337
BslI CCNNNNNNNGG 2 cut(s) 273, 274
BsnI GGCC 4 cut(s) 123, 364, 449, 549
BsoBI CYCGRG 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 258
Bsp13I TCCGGA 1 cut(s) 336
Bsp143I GATC 1 cut(s) 308
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 9 cut(s) 23, 231, 244, 268, 291, 425, 431, 450, 458
BspANI GGCC 4 cut(s) 123, 364, 449, 549
BspCNI CTCAG 1 cut(s) 297
BspEI TCCGGA 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 344, 429
BsrBI CCGCTC 1 cut(s) 244
BsrI ACTGG 2 cut(s) 195, 278
BssECI CCNNGG 5 cut(s) 18, 124, 234, 325, 550
BssMI GATC 1 cut(s) 308
BssNI GRCGYC 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 236, 552
Bst6I CTCTTC 2 cut(s) 63, 93
BstACI GRCGYC 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 215, 462
BstDEI CTNAG 2 cut(s) 305, 372
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 484
BstKTI GATC 1 cut(s) 311
BstMBI GATC 1 cut(s) 308
BstMWI GCNNNNNNNGC 2 cut(s) 253, 546
BstNI CCWGG 2 cut(s) 236, 552
BstSCI CCNGG 4 cut(s) 123, 124, 234, 550
BstV1I GCAGC 4 cut(s) 100, 103, 275, 313
BstV2I GAAGAC 2 cut(s) 81, 396
BstX2I RGATCY 1 cut(s) 308
BstXI CCANNNNNNTGG 1 cut(s) 190
BstYI RGATCY 1 cut(s) 308
BsuRI GGCC 4 cut(s) 123, 364, 449, 549
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 484
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 3 cut(s) 188, 224, 271
Cac8I GCNNGC 2 cut(s) 215, 462
CaiI CAGNNNCTG 1 cut(s) 304
Cfr13I GGNCC 2 cut(s) 122, 548
Cfr9I CCCGGG 1 cut(s) 124
CseI GACGC 1 cut(s) 189
CviAII CATG 1 cut(s) 19
DdeI CTNAG 2 cut(s) 305, 372
DpnI GATC 1 cut(s) 310
DpnII GATC 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 2 cut(s) 63, 93
EarI CTCTTC 2 cut(s) 63, 93
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 256
EcoRII CCWGG 2 cut(s) 234, 550
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 22
FaiI YATR 2 cut(s) 20, 522
FatI CATG 1 cut(s) 18
FauI CCCGC 1 cut(s) 275
Fnu4HI GCNGC 8 cut(s) 89, 92, 245, 289, 302, 426, 450, 458
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 8 cut(s) 89, 92, 245, 289, 302, 426, 450, 458
FspBI CTAG 1 cut(s) 465
GluI GCNGC 8 cut(s) 89, 92, 245, 289, 302, 426, 450, 458
HaeIII GGCC 4 cut(s) 123, 364, 449, 549
HapII CCGG 2 cut(s) 125, 337
HgaI GACGC 1 cut(s) 189
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 1 cut(s) 22
HinfI GANTC 3 cut(s) 136, 487, 511
HpaII CCGG 2 cut(s) 125, 337
HphI GGTGA 1 cut(s) 496
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 3 cut(s) 140, 337, 508
Hpy99I CGWCG 4 cut(s) 205, 415, 418, 421
HpyAV CCTTC 2 cut(s) 387, 469
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 546
HpyF3I CTNAG 2 cut(s) 305, 372
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 1 cut(s) 22
Kpn2I TCCGGA 1 cut(s) 336
Kzo9I GATC 1 cut(s) 308
LmnI GCTCC 3 cut(s) 253, 348, 433
Lsp1109I GCAGC 4 cut(s) 100, 103, 275, 313
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 465
MaeII ACGT 1 cut(s) 174
MalI GATC 1 cut(s) 310
MbiI CCGCTC 1 cut(s) 244
MboI GATC 1 cut(s) 308
MboII GAAGA 9 cut(s) 58, 74, 77, 80, 86, 110, 396, 399, 538
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 1 cut(s) 532
MroI TCCGGA 1 cut(s) 336
MseI TTAA 2 cut(s) 53, 168
MslI CAYNNNNRTG 1 cut(s) 177
MspA1I CMGCKG 2 cut(s) 304, 433
MspI CCGG 2 cut(s) 125, 337
MspR9I CCNGG 4 cut(s) 125, 126, 236, 552
MvaI CCWGG 2 cut(s) 236, 552
MwoI GCNNNNNNNGC 2 cut(s) 253, 546
NciI CCSGG 2 cut(s) 125, 126
NcoI CCATGG 1 cut(s) 18
NdeII GATC 1 cut(s) 308
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 2 cut(s) 344, 429
PcsI WCGNNNNNNNCGW 2 cut(s) 416, 506
PfeI GAWTC 3 cut(s) 136, 487, 511
PkrI GCNGC 8 cut(s) 90, 93, 246, 290, 303, 427, 451, 459
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 2 cut(s) 234, 550
PspGI CCWGG 2 cut(s) 234, 550
PspN4I GGNNCC 2 cut(s) 344, 429
PspPI GGNCC 2 cut(s) 122, 548
PstNI CAGNNNCTG 1 cut(s) 304
PsuI RGATCY 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 177
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 2 cut(s) 53, 168
SatI GCNGC 8 cut(s) 89, 92, 245, 289, 302, 426, 450, 458
Sau3AI GATC 1 cut(s) 308
Sau96I GGNCC 2 cut(s) 122, 548
ScrFI CCNGG 4 cut(s) 125, 126, 236, 552
SduI GDGCHC 1 cut(s) 258
SetI ASST 8 cut(s) 60, 108, 165, 177, 258, 306, 470, 486
SfaNI GCATC 1 cut(s) 169
SmaI CCCGGG 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 177
SrfI GCCCGGGC 1 cut(s) 126
Sse9I AATT 1 cut(s) 532
SsiI CCGC 9 cut(s) 23, 231, 244, 268, 291, 425, 431, 450, 458
SspMI CTAG 1 cut(s) 465
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 4 cut(s) 123, 124, 234, 550
StyI CCWWGG 1 cut(s) 18
TaiI ACGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 159, 509
TasI AATT 1 cut(s) 532
TauI GCSGC 4 cut(s) 247, 428, 452, 460
TfiI GAWTC 3 cut(s) 136, 487, 511
Tru1I TTAA 2 cut(s) 53, 168
Tru9I TTAA 2 cut(s) 53, 168
TscAI CASTG 3 cut(s) 195, 224, 278
TseI GCWGC 4 cut(s) 88, 91, 288, 301
TspDTI ATGAA 3 cut(s) 17, 59, 545
TspGWI ACGGA 1 cut(s) 372
TspMI CCCGGG 1 cut(s) 124
TspRI CASTG 3 cut(s) 195, 224, 278
XmaI CCCGGG 1 cut(s) 124
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.