Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008631

Physical Location & Seq

Genomic Coordinates Forward (+)

12823496 .. 12826209

Gene Structure 2714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G24940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGACGGAGAAGAGCTTACCGAGCAGGAGACTGCCTTGTACGACCGCCAGATTAGGGTTTGGGGCGCTAATGCTCAGAGAAGATTGACCAAAGCTCATATCTTGGTATCTGGAATTAAGGGGACTGTTGCTGAGTTTTGCAAGAACATTGTGCTGGCAGGAGTTGGTTCAGTGACTTTAATGGATGATCGTTTAGCAAACATGGAGGCCTTGAACGCTAACTTTTTGATTCCGCCTGATGAAAATGTTTACAGTGGCAAAACTGTGGCTGAGATTTGTAGTGATTCACTCAAGGATTTCAACCCTATGGTCCGTGTTTCCGTAGAGAAAGGTGATTTGTCAATGCTTGGCACTGATTTTTTTGAGCAGTTTGATGTCGTAGTTATAGGCTATGGTTCTCGTGCTACCAAAAAATATGTCAATGAAAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTATACAGTCGATTGTAGAGACTCATGTGGTGAAATCTTTGTGGACCTCCAAGATTACAAGTACACAAAGAAAAAGCTTGAAGAGATGGTGGAATGCGAACTAAATTTTCCAAGTTTTCAGGAAGCTATATCGGTACCATGGAAACCGATTCCTCGGAGAACAGCAAAGCTCTACTTTGCTATGAGAGTAATAGAAGTGTTTGAAGAGAGTGAAGGGCGTAAACATGGAGAATGTTCGCTACTCGATCTTGCCAGAGTCTTGGAAATCAAAAAGCAACTCTGTGAGGCAAACTCTGTGAGCGAGAGCCATATACCAGATATTCTCTTGGAGAGACTTATCACTGGTACTACTGAATTCCCGCCAGTTTGTGCCATTGTGGGAGGAATATTAGCACAGGAGGTGATCAAAGCAGTATCAGGCAAAGGAGACCCGTTGAAAAACTTCTTCTACTATGATGGTGAAGATGGGAAAGGTGTGATGGAAGACATTTCCGACTCTTTTACCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0019948 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

ThiF

Protein Analysis

322

Amino Acids

36.12

Weight (kDa)

5.09

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiF	PF00899	14 - 308	1.1e-24	ThiF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24940 AT5G50580 AT5G50580 AT5G50680 AT5G50680
fragaria_vesca	FvH4_5g08600 FvH4_5g08600 FvH4_5g08600 FvH4_5g08600
malus_domestica	MD06G1138700.v1.1 MD14G1154700.v1.1
prunus_persica	Prupe.5G148900_v2.0.a1 Prupe.5G148900_v2.0.a1
pyrus_communis	pycom06g12980 pycom14g12870
rosa_chinensis	RchiOBHm_Chr7g0189801
rosa_laevigata	RLG00000004589
rosa_multiflora	Rmu_sc0014337.1_g000003
rosa_roxburghii	Rroxscaffold_3G00265150
rosa_rugosa	Rorug06G0500000
rosa_samantha	Rh7AG105100 Rh7CG109700
rosa_wichuraiana	Rw7G009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	592
AccB1I	GGYRCC	1 cut(s)	592
AciI	CCGC	3 cut(s)	46, 233, 818
AcsI	RAATTY	2 cut(s)	562, 812
AfaI	GTAC	4 cut(s)	41, 521, 594, 805
AfiI	CCNNNNNNNGG	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	5 cut(s)	214, 301, 539, 662, 895
AluBI	AGCT	5 cut(s)	16, 95, 535, 584, 628
AluI	AGCT	5 cut(s)	16, 95, 535, 584, 628
Alw26I	GTCTC	4 cut(s)	23, 471, 784, 879
AoxI	GGCC	1 cut(s)	207
ApoI	RAATTY	2 cut(s)	562, 812
ArsI	GACNNNNNNTTYG	2 cut(s)	402, 434
Asp700I	GAANNNNTTC	1 cut(s)	899
Asp718I	GGTACC	1 cut(s)	592
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	310, 502
AsuHPI	GGTGA	4 cut(s)	344, 500, 871, 929
AvaII	GGWCC	2 cut(s)	310, 502
BanI	GGYRCC	1 cut(s)	592
BauI	CACGAG	1 cut(s)	399
BbsI	GAAGAC	1 cut(s)	948
BccI	CCATC	4 cut(s)	538, 908, 917, 931
BclI	TGATCA	1 cut(s)	861
BcoDI	GTCTC	4 cut(s)	23, 471, 784, 879
BfoI	RGCGCY	1 cut(s)	69
Bme18I	GGWCC	2 cut(s)	310, 502
BmgT120I	GGNCC	2 cut(s)	310, 502
BmiI	GGNNCC	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	948
BplI	GAGNNNNNCTC	2 cut(s)	734, 766
BpuEI	CTTGAG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	879
BsaJI	CCNNGG	2 cut(s)	596, 611
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	805, 821
BseDI	CCNNGG	2 cut(s)	596, 611
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	3 cut(s)	89, 123, 261
BseNI	ACTGG	2 cut(s)	805, 821
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	592
BsiEI	CGRYCG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	4 cut(s)	23, 471, 784, 879
BsmFI	GGGAC	1 cut(s)	136
BsmI	GAATGC	2 cut(s)	455, 557
BsnI	GGCC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	879
Bsp143I	GATC	3 cut(s)	187, 703, 861
Bsp19I	CCATGG	1 cut(s)	596
BspACI	CCGC	3 cut(s)	46, 233, 818
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	3 cut(s)	88, 124, 262
BspLI	GGNNCC	1 cut(s)	594
BspQI	GCTCTTC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	879
BsrI	ACTGG	2 cut(s)	805, 821
BssECI	CCNNGG	2 cut(s)	596, 611
BssMI	GATC	3 cut(s)	187, 703, 861
BssSI	CACGAG	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	596
Bst2BI	CACGAG	1 cut(s)	399
Bst4CI	ACNGT	4 cut(s)	127, 254, 265, 466
Bst6I	CTCTTC	3 cut(s)	6, 534, 657
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	3 cut(s)	75, 132, 270
BstDSI	CCRYGG	1 cut(s)	596
BstF5I	GGATG	1 cut(s)	190
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	3 cut(s)	190, 706, 864
BstMAI	GTCTC	4 cut(s)	23, 471, 784, 879
BstMBI	GATC	3 cut(s)	187, 703, 861
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 215
BstV2I	GAAGAC	1 cut(s)	948
BstXI	CCANNNNNNTGG	1 cut(s)	718
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	596
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	4 cut(s)	177, 259, 351, 798
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	310, 502
Csp6I	GTAC	4 cut(s)	40, 520, 593, 804
CviAII	CATG	4 cut(s)	202, 483, 597, 683
CviJI	RGCY	9 cut(s)	16, 95, 209, 269, 390, 535, 584, 628, 765
CviKI_1	RGCY	9 cut(s)	16, 95, 209, 269, 390, 535, 584, 628, 765
CviQI	GTAC	4 cut(s)	40, 520, 593, 804
DdeI	CTNAG	3 cut(s)	75, 132, 270
DpnI	GATC	3 cut(s)	189, 705, 863
DpnII	GATC	3 cut(s)	187, 703, 861
Eam1104I	CTCTTC	3 cut(s)	6, 534, 657
EarI	CTCTTC	3 cut(s)	6, 534, 657
EciI	GGCGGA	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	596
Eco147I	AGGCCT	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	879
Eco47I	GGWCC	2 cut(s)	310, 502
EcoRI	GAATTC	1 cut(s)	812
EcoT14I	CCWWGG	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	4 cut(s)	205, 486, 600, 686
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	4 cut(s)	201, 482, 596, 682
FauI	CCCGC	1 cut(s)	825
FbaI	TGATCA	1 cut(s)	861
FokI	GGATG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	4 cut(s)	205, 486, 600, 686
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	6 cut(s)	229, 284, 479, 607, 714, 953
HphI	GGTGA	4 cut(s)	344, 500, 871, 929
Hpy166II	GTNNAC	4 cut(s)	250, 502, 522, 680
Hpy188I	TCNGA	4 cut(s)	78, 435, 615, 952
Hpy188III	TCNNGA	2 cut(s)	111, 578
Hpy8I	GTNNAC	4 cut(s)	250, 502, 522, 680
HpyAV	CCTTC	1 cut(s)	665
HpyCH4III	ACNGT	4 cut(s)	127, 254, 265, 466
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 215
HpyF3I	CTNAG	3 cut(s)	75, 132, 270
HpySE526I	ACGT	1 cut(s)	448
Hsp92II	CATG	4 cut(s)	205, 486, 600, 686
HspAI	GCGC	1 cut(s)	66
KpnI	GGTACC	1 cut(s)	596
Ksp22I	TGATCA	1 cut(s)	861
Kzo9I	GATC	3 cut(s)	187, 703, 861
LguI	GCTCTTC	1 cut(s)	6
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	189, 705, 863
MboI	GATC	3 cut(s)	187, 703, 861
MboII	GAAGA	7 cut(s)	23, 93, 551, 674, 895, 932, 953
MluCI	AATT	3 cut(s)	114, 562, 812
MlyI	GAGTC	3 cut(s)	473, 723, 947
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	6 cut(s)	199, 515, 621, 736, 833, 850
MroXI	GAANNNNTTC	1 cut(s)	899
MseI	TTAA	4 cut(s)	117, 179, 440, 967
Mva1269I	GAATGC	2 cut(s)	455, 557
MwoI	GCNNNNNNNGC	2 cut(s)	22, 215
NcoI	CCATGG	1 cut(s)	596
NdeII	GATC	3 cut(s)	187, 703, 861
NlaIII	CATG	4 cut(s)	205, 486, 600, 686
NlaIV	GGNNCC	1 cut(s)	594
NmuCI	GTSAC	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	6
PctI	GAATGC	2 cut(s)	455, 557
PdmI	GAANNNNTTC	1 cut(s)	899
PfeI	GAWTC	3 cut(s)	229, 284, 607
PleI	GAGTC	3 cut(s)	473, 722, 947
PpsI	GAGTC	3 cut(s)	473, 722, 947
PspN4I	GGNNCC	1 cut(s)	594
PspPI	GGNCC	2 cut(s)	310, 502
RsaI	GTAC	4 cut(s)	41, 521, 594, 805
RsaNI	GTAC	4 cut(s)	40, 520, 593, 804
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	4 cut(s)	117, 179, 440, 967
Sau3AI	GATC	3 cut(s)	187, 703, 861
Sau96I	GGNCC	2 cut(s)	310, 502
SchI	GAGTC	3 cut(s)	473, 723, 947
SinI	GGWCC	2 cut(s)	310, 502
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	3 cut(s)	114, 562, 812
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	3 cut(s)	46, 233, 818
SspI	AATATT	1 cut(s)	846
StuI	AGGCCT	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	4 cut(s)	127, 254, 265, 466
TaiI	ACGT	1 cut(s)	451
TaqI	TCGA	2 cut(s)	468, 702
TasI	AATT	3 cut(s)	114, 562, 812
TatI	WGTACW	1 cut(s)	519
TfiI	GAWTC	3 cut(s)	229, 284, 607
Tru1I	TTAA	4 cut(s)	117, 179, 440, 967
Tru9I	TTAA	4 cut(s)	117, 179, 440, 967
TscAI	CASTG	4 cut(s)	177, 259, 358, 805
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	255, 438
TspGWI	ACGGA	3 cut(s)	21, 302, 310
TspRI	CASTG	4 cut(s)	177, 259, 358, 805
VpaK11BI	GGWCC	2 cut(s)	310, 502
XapI	RAATTY	2 cut(s)	562, 812
XmnI	GAANNNNTTC	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.