Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008631

Physical Location & Seq

Genomic Coordinates Forward (+)

60538243 .. 60542150

Gene Structure 3908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004589

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAAGAAGCGTCGAAAATCAAAATTCCTCAATTCCAATTGTGGAGAAGTAGTGCTAAAACCCTCGTCTCCGTCGTTCAATTTCTCAGCTTTCAGGAGGTTGCGGTTGAAAATGGACGGTGAGGAGTTGACTGAGCAGGAGACCGCTCTTTACGATCGCCAAATTAGGGTTTGGGGCGCTGATGCTCAGAGAAGACTGAGCAAAGCTCATATACTAGTCTGTGGAATTAATGGGACTACTGCCGAGTTTTGCAAGAACATTGTACTAGCAGGAGTTGGTAGTTTGACACTGGTGGATGATCGGGTAGCGACTGAAGAAGCCCTTTCTGCTAACTTTTTGATACCTTCTGATGAAAGTGTGTATGGGGGGAAAACTCTAACTGAGCTTTGTCGCGATTCTCTGAAAGACTTCAATCCGATGGTTCGGGTTTCTGTGGAGAAAGGTGACTTGTCAAACTTTGGCGGTGAGTTCTATAGCAAGTTTGATGTTGTGGTTATCAGTTGTTGCTCTCTCTCTACAAAAAAGCTGATCAATGAAAAATGCCGAAAGTTATCAAAGCGGGTAGCATTTTACACAGTTGATTGTAGAGACTCTTGTGGTGAAATTTTCGTTGATCTGCAACTCCATAAATATTCGAAGCAAAAACTGGAGGAAACAATTGAATGTCAACACAATTATCCAAGTTTTGAGGAATCAATTTCAGTACCTTGGAAAGCACTTCCCAGGAAAATGTCAAAGTTGTACTTTGCTATGCGAGTGATAGAAAGGTTTGAAGATGCTGAGCAACGTAAACCTGGAGAAGTATCAATTGCAGATCTTCCCGGTGTTCTGAAATTGAAGAATGAGTTCTGTGAAGCACAGTCATTGAAGGAATCTCATATTCCTGATGCCCTCCTAGAAAGATTGGTGACAGATCCAGGAGAATTTCCTCCAGTTTGTCCCATCATTGGGGGAATTCTTGGGCAGGAGGTTATCAAAGCAATATCAGGCAAAGGAGAGCCTCTCAAGAATTTCTTCTTCTTTGATGCTATGGATGGAAAGGGCATAATAGAGGACCTATCAAACAACACTGGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0019948 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

ThiF

Protein Analysis

360

Amino Acids

40.24

Weight (kDa)

6.9

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiF	PF00899	51 - 347	2.5e-24	ThiF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24940 AT5G50580 AT5G50580 AT5G50680 AT5G50680
fragaria_vesca	FvH4_5g08600 FvH4_5g08600 FvH4_5g08600 FvH4_5g08600
malus_domestica	MD06G1138700.v1.1 MD14G1154700.v1.1
prunus_persica	Prupe.5G148900_v2.0.a1 Prupe.5G148900_v2.0.a1
pyrus_communis	pycom06g12980 pycom14g12870
rosa_chinensis	RchiOBHm_Chr7g0189801
rosa_laevigata	RLG00000004589
rosa_multiflora	Rmu_sc0014337.1_g000003
rosa_roxburghii	Rroxscaffold_3G00265150
rosa_rugosa	Rorug06G0500000
rosa_samantha	Rh7AG105100 Rh7CG109700
rosa_wichuraiana	Rw7G009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	146
AccII	CGCG	1 cut(s)	393
AciI	CCGC	4 cut(s)	103, 144, 462, 559
AclWI	GGATC	1 cut(s)	908
AcsI	RAATTY	5 cut(s)	23, 603, 923, 954, 1009
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	3 cut(s)	264, 705, 743
AfiI	CCNNNNNNNGG	3 cut(s)	166, 947, 948
AgsI	TTSAA	7 cut(s)	79, 109, 412, 662, 773, 838, 868
AhlI	ACTAGT	1 cut(s)	214
AjnI	CCWGG	3 cut(s)	722, 793, 916
AluBI	AGCT	5 cut(s)	89, 206, 385, 526, 1077
AluI	AGCT	5 cut(s)	89, 206, 385, 526, 1077
Alw26I	GTCTC	3 cut(s)	72, 134, 582
AlwI	GGATC	1 cut(s)	908
ApoI	RAATTY	5 cut(s)	23, 603, 923, 954, 1009
AseI	ATTAAT	1 cut(s)	228
Asp700I	GAANNNNTTC	3 cut(s)	407, 845, 1013
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	1054
AsuC2I	CCSGG	1 cut(s)	822
AsuHPI	GGTGA	5 cut(s)	131, 455, 476, 611, 919
AsuII	TTCGAA	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	1054
BbsI	GAAGAC	1 cut(s)	199
BccI	CCATC	3 cut(s)	412, 950, 1028
BciT130I	CCWGG	3 cut(s)	724, 795, 918
BclI	TGATCA	1 cut(s)	528
BcnI	CCSGG	1 cut(s)	822
BcoDI	GTCTC	3 cut(s)	72, 134, 582
BcuI	ACTAGT	1 cut(s)	214
BfaI	CTAG	3 cut(s)	215, 266, 896
BfmI	CTRYAG	1 cut(s)	472
BfoI	RGCGCY	1 cut(s)	180
BglII	AGATCT	1 cut(s)	814
BlpI	GCTNAGC	1 cut(s)	780
Bme1390I	CCNGG	4 cut(s)	724, 795, 822, 918
Bme18I	GGWCC	1 cut(s)	1054
BmgT120I	GGNCC	1 cut(s)	1054
BmrFI	CCNGG	4 cut(s)	724, 795, 822, 918
BmsI	GCATC	4 cut(s)	172, 766, 877, 1015
BpiI	GAAGAC	1 cut(s)	199
BplI	GAGNNNNNCTC	4 cut(s)	190, 222, 987, 1019
BpmI	CTGGAG	3 cut(s)	668, 816, 915
Bpu1102I	GCTNAGC	1 cut(s)	780
Bpu14I	TTCGAA	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	989
BpuMI	CCSGG	1 cut(s)	822
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	707, 722
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 947, 948
Bse1I	ACTGG	4 cut(s)	294, 651, 932, 1075
BseBI	CCWGG	3 cut(s)	724, 795, 918
BseDI	CCNNGG	2 cut(s)	707, 722
BseGI	GGATG	2 cut(s)	301, 1039
BseLI	CCNNNNNNNGG	3 cut(s)	166, 947, 948
BseMII	CTCAG	6 cut(s)	99, 123, 188, 200, 372, 771
BseNI	ACTGG	4 cut(s)	294, 651, 932, 1075
BseRI	GAGGAG	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	393
Bsh1285I	CGRYCG	1 cut(s)	157
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	822
BslFI	GGGAC	2 cut(s)	247, 924
BslI	CCNNNNNNNGG	3 cut(s)	166, 947, 948
BsmAI	GTCTC	3 cut(s)	72, 134, 582
BsmBI	CGTCTC	1 cut(s)	72
BsmFI	GGGAC	2 cut(s)	247, 924
Bso31I	GGTCTC	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	635
Bsp143I	GATC	6 cut(s)	154, 298, 528, 613, 814, 913
Bsp1720I	GCTNAGC	1 cut(s)	780
Bsp68I	TCGCGA	1 cut(s)	393
BspACI	CCGC	4 cut(s)	103, 144, 462, 559
BspCNI	CTCAG	6 cut(s)	98, 124, 189, 199, 373, 772
BspFNI	CGCG	1 cut(s)	393
BspPI	GGATC	1 cut(s)	908
BspT104I	TTCGAA	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	134
BsrBI	CCGCTC	1 cut(s)	146
BsrI	ACTGG	4 cut(s)	294, 651, 932, 1075
BssECI	CCNNGG	2 cut(s)	707, 722
BssMI	GATC	6 cut(s)	154, 298, 528, 613, 814, 913
BssT1I	CCWWGG	1 cut(s)	707
Bst2UI	CCWGG	3 cut(s)	724, 795, 918
Bst4CI	ACNGT	3 cut(s)	119, 577, 861
BstBI	TTCGAA	1 cut(s)	635
BstDEI	CTNAG	6 cut(s)	85, 132, 186, 197, 381, 780
BstF5I	GGATG	2 cut(s)	301, 1039
BstFNI	CGCG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	6 cut(s)	157, 301, 531, 616, 817, 916
BstMAI	GTCTC	3 cut(s)	72, 134, 582
BstMBI	GATC	6 cut(s)	154, 298, 528, 613, 814, 913
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	3 cut(s)	724, 795, 918
BstSCI	CCNGG	4 cut(s)	722, 793, 820, 916
BstSFI	CTRYAG	1 cut(s)	472
BstUI	CGCG	1 cut(s)	393
BstV2I	GAAGAC	1 cut(s)	199
BstX2I	RGATCY	2 cut(s)	814, 913
BstYI	RGATCY	2 cut(s)	814, 913
BtsCI	GGATG	2 cut(s)	301, 1039
BtsIMutI	CAGTG	2 cut(s)	287, 1068
BtuMI	TCGCGA	1 cut(s)	393
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	1054
Csp6I	GTAC	3 cut(s)	263, 704, 742
CviJI	RGCY	7 cut(s)	89, 206, 320, 385, 526, 1000, 1077
CviKI_1	RGCY	7 cut(s)	89, 206, 320, 385, 526, 1000, 1077
CviQI	GTAC	3 cut(s)	263, 704, 742
DdeI	CTNAG	6 cut(s)	85, 132, 186, 197, 381, 780
DpnI	GATC	6 cut(s)	156, 300, 530, 615, 816, 915
DpnII	GATC	6 cut(s)	154, 298, 528, 613, 814, 913
Eco130I	CCWWGG	1 cut(s)	707
Eco31I	GGTCTC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	1054
Eco57I	CTGAAG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	1054
EcoRI	GAATTC	1 cut(s)	954
EcoRII	CCWGG	3 cut(s)	722, 793, 916
EcoT14I	CCWWGG	1 cut(s)	707
ErhI	CCWWGG	1 cut(s)	707
Esp3I	CGTCTC	1 cut(s)	72
FaiI	YATR	9 cut(s)	210, 212, 363, 474, 627, 752, 879, 1031, 1046
FalI	AAGNNNNNCTT	6 cut(s)	306, 338, 728, 760, 998, 1030
FaqI	GGGAC	2 cut(s)	247, 924
FauI	CCCGC	1 cut(s)	552
FbaI	TGATCA	1 cut(s)	528
FokI	GGATG	2 cut(s)	308, 1046
FspBI	CTAG	3 cut(s)	215, 266, 896
GlaI	GCGC	1 cut(s)	178
GsuI	CTGGAG	3 cut(s)	668, 816, 915
HaeII	RGCGCY	1 cut(s)	180
HapII	CCGG	1 cut(s)	822
HhaI	GCGC	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	2 cut(s)	129, 668
HindII	GTYRAC	2 cut(s)	129, 668
HinfI	GANTC	4 cut(s)	395, 590, 692, 872
HpaII	CCGG	1 cut(s)	822
HphI	GGTGA	5 cut(s)	131, 455, 476, 611, 919
Hpy166II	GTNNAC	3 cut(s)	129, 668, 791
Hpy188I	TCNGA	5 cut(s)	189, 349, 402, 417, 831
Hpy188III	TCNNGA	4 cut(s)	94, 392, 884, 1006
Hpy8I	GTNNAC	3 cut(s)	129, 668, 791
Hpy99I	CGWCG	2 cut(s)	15, 76
HpyAV	CCTTC	2 cut(s)	354, 862
HpyCH4III	ACNGT	3 cut(s)	119, 577, 861
HpyCH4IV	ACGT	1 cut(s)	787
HpyCH4V	TGCA	3 cut(s)	252, 619, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	6 cut(s)	85, 132, 186, 197, 381, 780
HpySE526I	ACGT	1 cut(s)	787
HspAI	GCGC	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	6 cut(s)	154, 298, 528, 613, 814, 913
LweI	GCATC	4 cut(s)	172, 766, 877, 1015
MaeI	CTAG	3 cut(s)	215, 266, 896
MaeII	ACGT	1 cut(s)	787
MaeIII	GTNAC	2 cut(s)	443, 907
MalI	GATC	6 cut(s)	156, 300, 530, 615, 816, 915
MbiI	CCGCTC	1 cut(s)	146
MboI	GATC	6 cut(s)	154, 298, 528, 613, 814, 913
MboII	GAAGA	8 cut(s)	16, 204, 326, 785, 809, 850, 1006, 1009
MfeI	CAATTG	3 cut(s)	37, 657, 807
MflI	RGATCY	2 cut(s)	814, 913
MlyI	GAGTC	1 cut(s)	584
MroXI	GAANNNNTTC	3 cut(s)	407, 845, 1013
MseI	TTAA	1 cut(s)	228
MspI	CCGG	1 cut(s)	822
MspR9I	CCNGG	4 cut(s)	724, 795, 822, 918
MunI	CAATTG	3 cut(s)	37, 657, 807
MvaI	CCWGG	3 cut(s)	724, 795, 918
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	326
NciI	CCSGG	1 cut(s)	822
NdeII	GATC	6 cut(s)	154, 298, 528, 613, 814, 913
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	2 cut(s)	443, 907
NruI	TCGCGA	1 cut(s)	393
NspV	TTCGAA	1 cut(s)	635
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PdmI	GAANNNNTTC	3 cut(s)	407, 845, 1013
PfeI	GAWTC	3 cut(s)	395, 692, 872
PfoI	TCCNGGA	1 cut(s)	916
Ple19I	CGATCG	1 cut(s)	157
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
PpuMI	RGGWCCY	1 cut(s)	1054
PshBI	ATTAAT	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	1054
Psp6I	CCWGG	3 cut(s)	722, 793, 916
PspGI	CCWGG	3 cut(s)	722, 793, 916
PspPI	GGNCC	1 cut(s)	1054
PspPPI	RGGWCCY	1 cut(s)	1054
PsuI	RGATCY	2 cut(s)	814, 913
PvuI	CGATCG	1 cut(s)	157
RruI	TCGCGA	1 cut(s)	393
RsaI	GTAC	3 cut(s)	264, 705, 743
RsaNI	GTAC	3 cut(s)	263, 704, 742
SaqAI	TTAA	1 cut(s)	228
Sau3AI	GATC	6 cut(s)	154, 298, 528, 613, 814, 913
Sau96I	GGNCC	1 cut(s)	1054
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	4 cut(s)	724, 795, 822, 918
SfaNI	GCATC	4 cut(s)	172, 766, 877, 1015
SfcI	CTRYAG	1 cut(s)	472
SfuI	TTCGAA	1 cut(s)	635
SinI	GGWCC	1 cut(s)	1054
SmlI	CTYRAG	1 cut(s)	1004
SmoI	CTYRAG	1 cut(s)	1004
SpeI	ACTAGT	1 cut(s)	214
SsiI	CCGC	4 cut(s)	103, 144, 462, 559
SspI	AATATT	1 cut(s)	632
SspMI	CTAG	3 cut(s)	215, 266, 896
StyD4I	CCNGG	4 cut(s)	722, 793, 820, 916
StyI	CCWWGG	1 cut(s)	707
TaaI	ACNGT	3 cut(s)	119, 577, 861
TaiI	ACGT	1 cut(s)	790
TaqI	TCGA	2 cut(s)	13, 635
TatI	WGTACW	2 cut(s)	262, 741
TfiI	GAWTC	3 cut(s)	395, 692, 872
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	2 cut(s)	294, 1075
TseFI	GTSAC	2 cut(s)	443, 907
Tsp45I	GTSAC	2 cut(s)	443, 907
TspDTI	ATGAA	3 cut(s)	17, 366, 549
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	294, 1075
VpaK11BI	GGWCC	1 cut(s)	1054
VspI	ATTAAT	1 cut(s)	228
XapI	RAATTY	5 cut(s)	23, 603, 923, 954, 1009
XmnI	GAANNNNTTC	3 cut(s)	407, 845, 1013
XspI	CTAG	3 cut(s)	215, 266, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.