Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008631

Physical Location & Seq

Genomic Coordinates Forward (+)

4952274 .. 4956622

Gene Structure 4349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08600.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGACGGCGAGGAGTTGACTGAACAGGAGACCGCTCTTTACGATCGCCAAATTAGGGTTTGGGGCGCTGATGCTCAGAGAAGGCTGAGCAAAGCTCATATACTAGTCTGTGGAATTAATGGGACTACTGCCGAGTTTTGCAAGAACATTGTACTAGCAGGAGTCGGTAGTTTGACACTGGTGGATGATCGGGTAGCGACCGAAGAGGCCCTTTCTGCTAACTTTTTGATACCTTGTGATGAAAGCGTGTATGGTGGGAAAACTCTAACCGAGCTTTGTCGCGATTCTCTGAAAGATTTCAATCCGATGGTTCGTGTTTCTGTGGAGAAAGGTGACTTGTCAAACTTTGGTGGTGAGTTCTACAGCAACTTTGATGTTGTGGTCATCAGTTGTTGCTCTCTCTCTACAAAAAAACTGATCAATGAAAAATGCCGAAAGTTATCAAAGCGGGTTGCATTTTACACAGTTGATTGTAGAGACTCTTGTGGTGAAATTTTTGTTGATCTGCAACTCCATAAATACTCAAAGCAAAAACTGGAGGAAACAATTGAATGTGAGCACAATTATCCAAGTTTTGAGGATTCAATTTCAGTACCTTGGAAAGCACTTCCCAGAAAAATGTCAAAGCTGTACTTTGCTATGCGAGTGATAGAGAGGTTTGAAGAAGCTGAGCAACGTAAACCCGGAGAAGTATCAATTGCAGATCTTCCTGGTGTTCTGAAATTGAAGAAGGAATTCTGTGAATCACAGTCGTTGAAGGAATCTCATATTCCTGATGCCCTCCTTGAAAGATTGGTGACAGATCCAAGAGAATTTCCTCCTGTTTGTCCCATCATTGGTGGGATTCTGGGGCAGGAGGTTATCAAAGCAATATCAGGCAAAGGAGAACCTCTCAAGAATTTCTTCTTCTTTGATGCTATGGATGGAAAGGGCATCATAGAGGACCTATCAAACTTTAGCACCGGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0019948 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

ThiF

Protein Analysis

324

Amino Acids

36.15

Weight (kDa)

5.16

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiF	PF00899	14 - 310	1.1e-23	ThiF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24940 AT5G50580 AT5G50580 AT5G50680 AT5G50680
fragaria_vesca	FvH4_5g08600 FvH4_5g08600 FvH4_5g08600 FvH4_5g08600
malus_domestica	MD06G1138700.v1.1 MD14G1154700.v1.1
prunus_persica	Prupe.5G148900_v2.0.a1 Prupe.5G148900_v2.0.a1
pyrus_communis	pycom06g12980 pycom14g12870
rosa_chinensis	RchiOBHm_Chr7g0189801
rosa_laevigata	RLG00000004589
rosa_multiflora	Rmu_sc0014337.1_g000003
rosa_roxburghii	Rroxscaffold_3G00265150
rosa_rugosa	Rorug06G0500000
rosa_samantha	Rh7AG105100 Rh7CG109700
rosa_wichuraiana	Rw7G009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	35
AccII	CGCG	1 cut(s)	282
AciI	CCGC	2 cut(s)	33, 448
AclWI	GGATC	1 cut(s)	797
AcsI	RAATTY	4 cut(s)	492, 734, 812, 898
AfaI	GTAC	3 cut(s)	153, 594, 632
AfiI	CCNNNNNNNGG	2 cut(s)	55, 836
AgsI	TTSAA	7 cut(s)	301, 551, 585, 662, 727, 757, 788
AhlI	ACTAGT	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	709
AluBI	AGCT	5 cut(s)	95, 274, 628, 668, 969
AluI	AGCT	5 cut(s)	95, 274, 628, 668, 969
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	2 cut(s)	23, 471
AlwI	GGATC	1 cut(s)	797
AoxI	GGCC	1 cut(s)	207
ApoI	RAATTY	4 cut(s)	492, 734, 812, 898
AseI	ATTAAT	1 cut(s)	117
Asp700I	GAANNNNTTC	3 cut(s)	296, 734, 902
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	208, 943
AsuC2I	CCSGG	1 cut(s)	684
AsuHPI	GGTGA	4 cut(s)	344, 365, 500, 808
AvaII	GGWCC	1 cut(s)	943
Bbv12I	GWGCWC	1 cut(s)	561
BccI	CCATC	3 cut(s)	301, 839, 917
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	711
BclI	TGATCA	1 cut(s)	417
BcnI	CCSGG	1 cut(s)	684
BcoDI	GTCTC	2 cut(s)	23, 471
BcuI	ACTAGT	1 cut(s)	103
BfaI	CTAG	2 cut(s)	104, 155
BfmI	CTRYAG	1 cut(s)	361
BfoI	RGCGCY	1 cut(s)	69
BglII	AGATCT	1 cut(s)	703
BlpI	GCTNAGC	2 cut(s)	86, 669
Bme1390I	CCNGG	2 cut(s)	684, 711
Bme18I	GGWCC	1 cut(s)	943
BmgT120I	GGNCC	2 cut(s)	208, 943
BmrFI	CCNGG	2 cut(s)	684, 711
BmsI	GCATC	4 cut(s)	61, 766, 904, 942
BplI	GAGNNNNNCTC	4 cut(s)	79, 111, 876, 908
BpmI	CTGGAG	1 cut(s)	557
Bpu1102I	GCTNAGC	2 cut(s)	86, 669
BpuEI	CTTGAG	1 cut(s)	878
BpuMI	CCSGG	1 cut(s)	684
BsaBI	GATNNNNATC	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	596
BsaWI	WCCGGW	1 cut(s)	962
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 836
Bse1I	ACTGG	2 cut(s)	183, 540
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	1 cut(s)	596
BseGI	GGATG	2 cut(s)	190, 928
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	55, 836
BseMII	CTCAG	3 cut(s)	77, 89, 660
BseNI	ACTGG	2 cut(s)	183, 540
BseRI	GAGGAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	282
Bsh1285I	CGRYCG	2 cut(s)	46, 201
BshFI	GGCC	1 cut(s)	209
BsiEI	CGRYCG	2 cut(s)	46, 201
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	684, 963
BslFI	GGGAC	2 cut(s)	136, 813
BslI	CCNNNNNNNGG	2 cut(s)	55, 836
BsmAI	GTCTC	2 cut(s)	23, 471
BsmFI	GGGAC	2 cut(s)	136, 813
BsnI	GGCC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	6 cut(s)	43, 187, 417, 502, 703, 802
Bsp1720I	GCTNAGC	2 cut(s)	86, 669
Bsp68I	TCGCGA	1 cut(s)	282
BspACI	CCGC	2 cut(s)	33, 448
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	3 cut(s)	78, 88, 661
BspFNI	CGCG	1 cut(s)	282
BspPI	GGATC	1 cut(s)	797
BspTNI	GGTCTC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	183, 540
BssECI	CCNNGG	1 cut(s)	596
BssMI	GATC	6 cut(s)	43, 187, 417, 502, 703, 802
BssT1I	CCWWGG	1 cut(s)	596
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	2 cut(s)	466, 750
Bst6I	CTCTTC	1 cut(s)	198
BstDEI	CTNAG	3 cut(s)	75, 86, 669
BstF5I	GGATG	2 cut(s)	190, 928
BstFNI	CGCG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	6 cut(s)	46, 190, 420, 505, 706, 805
BstMAI	GTCTC	2 cut(s)	23, 471
BstMBI	GATC	6 cut(s)	43, 187, 417, 502, 703, 802
BstMCI	CGRYCG	2 cut(s)	46, 201
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 966
BstNI	CCWGG	1 cut(s)	711
BstSCI	CCNGG	2 cut(s)	682, 709
BstSFI	CTRYAG	1 cut(s)	361
BstUI	CGCG	1 cut(s)	282
BstX2I	RGATCY	2 cut(s)	703, 802
BstYI	RGATCY	2 cut(s)	703, 802
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	190, 928
BtsIMutI	CAGTG	1 cut(s)	176
BtuMI	TCGCGA	1 cut(s)	282
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	208, 943
Csp6I	GTAC	3 cut(s)	152, 593, 631
CviJI	RGCY	7 cut(s)	85, 95, 209, 274, 628, 668, 969
CviKI_1	RGCY	7 cut(s)	85, 95, 209, 274, 628, 668, 969
CviQI	GTAC	3 cut(s)	152, 593, 631
DdeI	CTNAG	3 cut(s)	75, 86, 669
DpnI	GATC	6 cut(s)	45, 189, 419, 504, 705, 804
DpnII	GATC	6 cut(s)	43, 187, 417, 502, 703, 802
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	596
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	943
EcoO109I	RGGNCCY	2 cut(s)	208, 943
EcoRI	GAATTC	1 cut(s)	734
EcoRII	CCWGG	1 cut(s)	709
EcoT14I	CCWWGG	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	596
FaiI	YATR	8 cut(s)	99, 101, 252, 516, 641, 768, 920, 938
FalI	AAGNNNNNCTT	6 cut(s)	195, 227, 617, 649, 887, 919
FaqI	GGGAC	2 cut(s)	136, 813
FauI	CCCGC	1 cut(s)	441
FbaI	TGATCA	1 cut(s)	417
FokI	GGATG	2 cut(s)	197, 935
FspBI	CTAG	2 cut(s)	104, 155
GlaI	GCGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	557
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	2 cut(s)	684, 963
HhaI	GCGC	1 cut(s)	68
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	7 cut(s)	162, 284, 479, 581, 743, 761, 844
HpaII	CCGG	2 cut(s)	684, 963
HphI	GGTGA	4 cut(s)	344, 365, 500, 808
Hpy166II	GTNNAC	2 cut(s)	18, 680
Hpy188I	TCNGA	4 cut(s)	78, 291, 306, 720
Hpy188III	TCNNGA	3 cut(s)	281, 773, 895
Hpy8I	GTNNAC	2 cut(s)	18, 680
HpyAV	CCTTC	3 cut(s)	75, 724, 751
HpyCH4III	ACNGT	2 cut(s)	466, 750
HpyCH4IV	ACGT	1 cut(s)	676
HpyCH4V	TGCA	4 cut(s)	141, 455, 508, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 966
HpyF3I	CTNAG	3 cut(s)	75, 86, 669
HpySE526I	ACGT	1 cut(s)	676
HspAI	GCGC	1 cut(s)	66
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	6 cut(s)	43, 187, 417, 502, 703, 802
LweI	GCATC	4 cut(s)	61, 766, 904, 942
MaeI	CTAG	2 cut(s)	104, 155
MaeII	ACGT	1 cut(s)	676
MaeIII	GTNAC	2 cut(s)	332, 796
MalI	GATC	6 cut(s)	45, 189, 419, 504, 705, 804
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	6 cut(s)	43, 187, 417, 502, 703, 802
MboII	GAAGA	6 cut(s)	215, 674, 698, 739, 895, 898
MfeI	CAATTG	2 cut(s)	546, 696
MflI	RGATCY	2 cut(s)	703, 802
MhlI	GDGCHC	1 cut(s)	561
MlyI	GAGTC	2 cut(s)	171, 473
MroXI	GAANNNNTTC	3 cut(s)	296, 734, 902
MseI	TTAA	1 cut(s)	117
MspI	CCGG	2 cut(s)	684, 963
MspR9I	CCNGG	2 cut(s)	684, 711
MunI	CAATTG	2 cut(s)	546, 696
MvaI	CCWGG	1 cut(s)	711
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	215, 966
NciI	CCSGG	1 cut(s)	684
NdeII	GATC	6 cut(s)	43, 187, 417, 502, 703, 802
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	2 cut(s)	332, 796
NruI	TCGCGA	1 cut(s)	282
PdmI	GAANNNNTTC	3 cut(s)	296, 734, 902
PfeI	GAWTC	5 cut(s)	284, 581, 743, 761, 844
Ple19I	CGATCG	1 cut(s)	46
PleI	GAGTC	2 cut(s)	170, 473
PpsI	GAGTC	2 cut(s)	170, 473
PpuMI	RGGWCCY	1 cut(s)	943
PshBI	ATTAAT	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	943
Psp6I	CCWGG	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	709
PspPI	GGNCC	2 cut(s)	208, 943
PspPPI	RGGWCCY	1 cut(s)	943
PsuI	RGATCY	2 cut(s)	703, 802
PvuI	CGATCG	1 cut(s)	46
RruI	TCGCGA	1 cut(s)	282
RsaI	GTAC	3 cut(s)	153, 594, 632
RsaNI	GTAC	3 cut(s)	152, 593, 631
SaqAI	TTAA	1 cut(s)	117
Sau3AI	GATC	6 cut(s)	43, 187, 417, 502, 703, 802
Sau96I	GGNCC	2 cut(s)	208, 943
SchI	GAGTC	2 cut(s)	171, 473
ScrFI	CCNGG	2 cut(s)	684, 711
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	4 cut(s)	61, 766, 904, 942
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	943
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
SpeI	ACTAGT	1 cut(s)	103
SsiI	CCGC	2 cut(s)	33, 448
SspMI	CTAG	2 cut(s)	104, 155
StyD4I	CCNGG	2 cut(s)	682, 709
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	2 cut(s)	466, 750
TaiI	ACGT	1 cut(s)	679
TaqII	GACCGA	1 cut(s)	215
TatI	WGTACW	2 cut(s)	151, 630
TfiI	GAWTC	5 cut(s)	284, 581, 743, 761, 844
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	2 cut(s)	332, 796
Tsp45I	GTSAC	2 cut(s)	332, 796
TspDTI	ATGAA	2 cut(s)	255, 438
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	943
VspI	ATTAAT	1 cut(s)	117
XapI	RAATTY	4 cut(s)	492, 734, 812, 898
XmnI	GAANNNNTTC	3 cut(s)	296, 734, 902
XspI	CTAG	2 cut(s)	104, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.