Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014337.1

Orthogroup ID

OG0008631

Physical Location & Seq

Genomic Coordinates Reverse (-)

9610 .. 12233

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014337.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ctggtggatgatcgggtagcgaccgaagaagccctttctgctaactttttgataccttctgatgaaagtgtgtatggagggaaaactctaaccgagctttgtcgcgattctctgaaagatttcaatccgatggttcgtgtttctgtggagaaaggtgacttgtcaaactttggcggtgagttctatagcaagtttgatgttgtggttatcagttgttgctctctctctacaaaaaagctgatcaatgaaaaatgccgaaagttatccaagcgggtagcattttacacagttgattgtagagactcttgtggtgaaatttttgttgatctgcaactccataaatattcgaagcaaaaactggaggaaacaattgaatgtcaacacaattatccaagttttgaggaatcaatttcagtaccttggaaagcacttcccaggaaaatgtcaaagttgtactttgctatgcgagtgatagaaaggtttgaagatgctgagcaacgtaaacctggagaagtatcaattgcagatcttcccggtgttctgaaattgaagaatgagttctgtgaagcacagtcgttgaaggaatctcatattcctgatgccctcctagaaagattggtgacagatccaagagaatttcctccagtttgtcccatcattgggggaattcttgggcaggaggttatcaaagcaatatcaggcaaaggagagcctctcaagaatttcttcttctttgatgctatggatggaaagggcataatagaggacctatcaaacaacactggaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0019948 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

ThiF

Protein Analysis

263

Amino Acids

29.57

Weight (kDa)

5.25

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24940 AT5G50580 AT5G50580 AT5G50680 AT5G50680
fragaria_vesca	FvH4_5g08600 FvH4_5g08600 FvH4_5g08600 FvH4_5g08600
malus_domestica	MD06G1138700.v1.1 MD14G1154700.v1.1
prunus_persica	Prupe.5G148900_v2.0.a1 Prupe.5G148900_v2.0.a1
pyrus_communis	pycom06g12980 pycom14g12870
rosa_chinensis	RchiOBHm_Chr7g0189801
rosa_laevigata	RLG00000004589
rosa_multiflora	Rmu_sc0014337.1_g000003
rosa_roxburghii	Rroxscaffold_3G00265150
rosa_rugosa	Rorug06G0500000
rosa_samantha	Rh7AG105100 Rh7CG109700
rosa_wichuraiana	Rw7G009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	105
AciI	CCGC	2 cut(s)	174, 271
AclWI	GGATC	1 cut(s)	620
AcsI	RAATTY	4 cut(s)	315, 635, 666, 721
AfaI	GTAC	2 cut(s)	417, 455
AfiI	CCNNNNNNNGG	2 cut(s)	659, 660
AgsI	TTSAA	5 cut(s)	124, 374, 485, 550, 580
AjnI	CCWGG	2 cut(s)	434, 505
AluBI	AGCT	3 cut(s)	97, 238, 789
AluI	AGCT	3 cut(s)	97, 238, 789
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	620
ApoI	RAATTY	4 cut(s)	315, 635, 666, 721
Asp700I	GAANNNNTTC	3 cut(s)	119, 557, 725
AspS9I	GGNCC	1 cut(s)	766
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	4 cut(s)	167, 188, 323, 631
AsuII	TTCGAA	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	766
BccI	CCATC	3 cut(s)	124, 662, 740
BciT130I	CCWGG	2 cut(s)	436, 507
BclI	TGATCA	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	184
BglII	AGATCT	1 cut(s)	526
BlpI	GCTNAGC	1 cut(s)	492
Bme1390I	CCNGG	3 cut(s)	436, 507, 534
Bme18I	GGWCC	1 cut(s)	766
BmgT120I	GGNCC	1 cut(s)	766
BmrFI	CCNGG	3 cut(s)	436, 507, 534
BmsI	GCATC	3 cut(s)	478, 589, 727
BplI	GAGNNNNNCTC	2 cut(s)	699, 731
BpmI	CTGGAG	3 cut(s)	380, 528, 627
Bpu1102I	GCTNAGC	1 cut(s)	492
Bpu14I	TTCGAA	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	419, 434
Bsc4I	CCNNNNNNNGG	2 cut(s)	659, 660
Bse1I	ACTGG	3 cut(s)	363, 644, 787
Bse8I	GATNNNNATC	1 cut(s)	123
BseBI	CCWGG	2 cut(s)	436, 507
BseDI	CCNNGG	2 cut(s)	419, 434
BseGI	GGATG	2 cut(s)	13, 751
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	2 cut(s)	659, 660
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	3 cut(s)	363, 644, 787
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	534
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	2 cut(s)	659, 660
BsmAI	GTCTC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	636
Bsp119I	TTCGAA	1 cut(s)	347
Bsp143I	GATC	5 cut(s)	10, 240, 325, 526, 625
Bsp1720I	GCTNAGC	1 cut(s)	492
Bsp68I	TCGCGA	1 cut(s)	105
BspACI	CCGC	2 cut(s)	174, 271
BspCNI	CTCAG	1 cut(s)	484
BspFNI	CGCG	1 cut(s)	105
BspPI	GGATC	1 cut(s)	620
BspT104I	TTCGAA	1 cut(s)	347
BsrI	ACTGG	3 cut(s)	363, 644, 787
BssECI	CCNNGG	2 cut(s)	419, 434
BssMI	GATC	5 cut(s)	10, 240, 325, 526, 625
BssT1I	CCWWGG	1 cut(s)	419
Bst2UI	CCWGG	2 cut(s)	436, 507
Bst4CI	ACNGT	2 cut(s)	289, 573
BstBI	TTCGAA	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	492
BstF5I	GGATG	2 cut(s)	13, 751
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	5 cut(s)	13, 243, 328, 529, 628
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	5 cut(s)	10, 240, 325, 526, 625
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	2 cut(s)	436, 507
BstSCI	CCNGG	3 cut(s)	434, 505, 532
BstSFI	CTRYAG	1 cut(s)	184
BstUI	CGCG	1 cut(s)	105
BstX2I	RGATCY	2 cut(s)	526, 625
BstYI	RGATCY	2 cut(s)	526, 625
BtsCI	GGATG	2 cut(s)	13, 751
BtsIMutI	CAGTG	1 cut(s)	780
BtuMI	TCGCGA	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	766
Csp6I	GTAC	2 cut(s)	416, 454
CviJI	RGCY	5 cut(s)	32, 97, 238, 712, 789
CviKI_1	RGCY	5 cut(s)	32, 97, 238, 712, 789
CviQI	GTAC	2 cut(s)	416, 454
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	5 cut(s)	12, 242, 327, 528, 627
DpnII	GATC	5 cut(s)	10, 240, 325, 526, 625
Eco130I	CCWWGG	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	766
EcoO109I	RGGNCCY	1 cut(s)	766
EcoRI	GAATTC	1 cut(s)	666
EcoRII	CCWGG	2 cut(s)	434, 505
EcoT14I	CCWWGG	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaiI	YATR	7 cut(s)	75, 186, 339, 464, 591, 743, 758
FalI	AAGNNNNNCTT	6 cut(s)	18, 50, 440, 472, 710, 742
FaqI	GGGAC	1 cut(s)	636
FauI	CCCGC	1 cut(s)	264
FbaI	TGATCA	1 cut(s)	240
FokI	GGATG	2 cut(s)	20, 758
FspBI	CTAG	1 cut(s)	608
GsuI	CTGGAG	3 cut(s)	380, 528, 627
HapII	CCGG	1 cut(s)	534
HincII	GTYRAC	1 cut(s)	380
HindII	GTYRAC	1 cut(s)	380
HinfI	GANTC	4 cut(s)	107, 302, 404, 584
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	4 cut(s)	167, 188, 323, 631
Hpy166II	GTNNAC	2 cut(s)	380, 503
Hpy188I	TCNGA	4 cut(s)	61, 114, 129, 543
Hpy188III	TCNNGA	3 cut(s)	104, 596, 718
Hpy8I	GTNNAC	2 cut(s)	380, 503
HpyAV	CCTTC	2 cut(s)	66, 574
HpyCH4III	ACNGT	2 cut(s)	289, 573
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	2 cut(s)	331, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	1 cut(s)	499
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	5 cut(s)	10, 240, 325, 526, 625
LweI	GCATC	3 cut(s)	478, 589, 727
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	2 cut(s)	155, 619
MalI	GATC	5 cut(s)	12, 242, 327, 528, 627
MboI	GATC	5 cut(s)	10, 240, 325, 526, 625
MboII	GAAGA	6 cut(s)	38, 497, 521, 562, 718, 721
MfeI	CAATTG	2 cut(s)	369, 519
MflI	RGATCY	2 cut(s)	526, 625
MluCI	AATT	9 cut(s)	315, 369, 385, 408, 519, 545, 635, 666, 721
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	8 cut(s)	71, 355, 394, 614, 651, 673, 723, 757
MroXI	GAANNNNTTC	3 cut(s)	119, 557, 725
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	3 cut(s)	436, 507, 534
MunI	CAATTG	2 cut(s)	369, 519
MvaI	CCWGG	2 cut(s)	436, 507
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	5 cut(s)	10, 240, 325, 526, 625
NmuCI	GTSAC	2 cut(s)	155, 619
NruI	TCGCGA	1 cut(s)	105
NspV	TTCGAA	1 cut(s)	347
PdmI	GAANNNNTTC	3 cut(s)	119, 557, 725
PfeI	GAWTC	3 cut(s)	107, 404, 584
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PpuMI	RGGWCCY	1 cut(s)	766
Psp5II	RGGWCCY	1 cut(s)	766
Psp6I	CCWGG	2 cut(s)	434, 505
PspGI	CCWGG	2 cut(s)	434, 505
PspPI	GGNCC	1 cut(s)	766
PspPPI	RGGWCCY	1 cut(s)	766
PsuI	RGATCY	2 cut(s)	526, 625
RruI	TCGCGA	1 cut(s)	105
RsaI	GTAC	2 cut(s)	417, 455
RsaNI	GTAC	2 cut(s)	416, 454
Sau3AI	GATC	5 cut(s)	10, 240, 325, 526, 625
Sau96I	GGNCC	1 cut(s)	766
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	3 cut(s)	436, 507, 534
SfaNI	GCATC	3 cut(s)	478, 589, 727
SfcI	CTRYAG	1 cut(s)	184
SfuI	TTCGAA	1 cut(s)	347
SinI	GGWCC	1 cut(s)	766
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	9 cut(s)	315, 369, 385, 408, 519, 545, 635, 666, 721
SsiI	CCGC	2 cut(s)	174, 271
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	1 cut(s)	608
StyD4I	CCNGG	3 cut(s)	434, 505, 532
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	2 cut(s)	289, 573
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	1 cut(s)	347
TaqII	GACCGA	1 cut(s)	38
TasI	AATT	9 cut(s)	315, 369, 385, 408, 519, 545, 635, 666, 721
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	3 cut(s)	107, 404, 584
TscAI	CASTG	1 cut(s)	787
TseFI	GTSAC	2 cut(s)	155, 619
Tsp45I	GTSAC	2 cut(s)	155, 619
TspDTI	ATGAA	2 cut(s)	78, 261
TspRI	CASTG	1 cut(s)	787
VpaK11BI	GGWCC	1 cut(s)	766
XapI	RAATTY	4 cut(s)	315, 635, 666, 721
XmnI	GAANNNNTTC	3 cut(s)	119, 557, 725
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.