Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008631

Physical Location & Seq

Genomic Coordinates Reverse (-)

18076381 .. 18079421

Gene Structure 3041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12980.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAGCGAAAAAAGTCTGAATATATGCCTTGAAAATCAAAATTCCCGAAATTCAATTCGGAAGCCCCGCGTCACTGTCCGTCTGTTTTCTCAGCAATTCAAATTCTCAGTTTTTCTAGGGTTGCGTTTGGGAATGGACGGCGAGGAGTTGACTGAGCAGGAGACTGCACTTTACGATCGCCAAATTAGGGTTTGGGGCGCTGGTGCCCAAAGAAGCAAAGCTCATGTATTGGTCTGTGGAATTACTGGAACTATTGCCGAGTTTTGCAAGAACATTGTCCTAGCCGGAGTTGGTAGTTTGACACTGGTGGATGATCGGGTAGTGAACGAAGATGCACTTTCTGCCAACTTTTTGATACCTTCTGATGAAAATGTGTATGCTGGAAAAACTCTGACTGAGCTTTGCCGTGATTCTCTGAAAGATTTCAATCCAATGGTTCGTGTTTCTGTAGAAAAAGGTGACTTGTCAAACTTTGGGTCGGAGTTCTATGGTAAATTTGATGTCGTCGTTGTCAGCTGTTGCTCCTTCACAACTAAAAAATTGATCGATCAAAAATGCCGAAAGTCCTCGAAGCGTGTAGCTTTTTATACAGTTGACTGTAGAGACTCCTGTGGTGAAATATTTGTTGATCTGCAACACCATAAATATTCGAAGAAAAAAAATGAGGAAACAATCGAATGCGAACTACATTATCCAAGCTTTGAGGAATCAATTTCAGTACCTTGGAAATCATTTCCCAGGAGATTCTCAAAGCTATACTTTGCTATGCGAGTAACTGAAAGGTTTGAAGAAGCCGAGCAACGTAAACCTGGAGAGTTATCGATTGCAGATCTTCCTGCTGTTCTGAAGCTGAAAAAAGAACTCTGTGAAGCACAGTCACTGAATGAGTCTCATATTCCAAATGCACTCCTGGAAAGATTGGTGACGGATACAAGAGAGTTTCCTCCAGTTTGTCCCATCATTGGAGGGATTCTTGGGCAGGAGGTAATTAAGACAATATCAGAGAAAGGAGACCCTGTCAAAAATTTCTTCTTCTTCGATGCTATGGATGGAAAGGGCATAATCGAGGACGTATCAGGGAACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0019948 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

ThiF

Protein Analysis

363

Amino Acids

40.83

Weight (kDa)

6.08

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24940 AT5G50580 AT5G50580 AT5G50680 AT5G50680
fragaria_vesca	FvH4_5g08600 FvH4_5g08600 FvH4_5g08600 FvH4_5g08600
malus_domestica	MD06G1138700.v1.1 MD14G1154700.v1.1
prunus_persica	Prupe.5G148900_v2.0.a1 Prupe.5G148900_v2.0.a1
pyrus_communis	pycom06g12980 pycom14g12870
rosa_chinensis	RchiOBHm_Chr7g0189801
rosa_laevigata	RLG00000004589
rosa_multiflora	Rmu_sc0014337.1_g000003
rosa_roxburghii	Rroxscaffold_3G00265150
rosa_rugosa	Rorug06G0500000
rosa_samantha	Rh7AG105100 Rh7CG109700
rosa_wichuraiana	Rw7G009100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AccII	CGCG	1 cut(s)	69
AciI	CCGC	1 cut(s)	67
AcsI	RAATTY	5 cut(s)	40, 49, 101, 494, 1024
AcuI	CTGAAG	1 cut(s)	866
AfaI	GTAC	1 cut(s)	720
AfiI	CCNNNNNNNGG	2 cut(s)	187, 962
AgsI	TTSAA	5 cut(s)	32, 54, 100, 427, 788
AjnI	CCWGG	3 cut(s)	737, 808, 909
AluBI	AGCT	7 cut(s)	221, 400, 516, 581, 699, 754, 850
AluI	AGCT	7 cut(s)	221, 400, 516, 581, 699, 754, 850
Alw26I	GTCTC	4 cut(s)	155, 597, 894, 1005
AlwNI	CAGNNNCTG	1 cut(s)	880
ApoI	RAATTY	5 cut(s)	40, 49, 101, 494, 1024
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
Asp700I	GAANNNNTTC	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	470, 626, 934
AsuII	TTCGAA	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	203
BccI	CCATC	2 cut(s)	965, 1043
BceAI	ACGGC	2 cut(s)	154, 390
BciT130I	CCWGG	3 cut(s)	739, 810, 911
BciVI	GTATCC	1 cut(s)	922
BcoDI	GTCTC	4 cut(s)	155, 597, 894, 1005
BfaI	CTAG	2 cut(s)	116, 281
BfmI	CTRYAG	2 cut(s)	447, 598
BfoI	RGCGCY	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	922
BglII	AGATCT	1 cut(s)	829
Bme1390I	CCNGG	3 cut(s)	739, 810, 911
BmiI	GGNNCC	2 cut(s)	205, 1082
BmrFI	CCNGG	3 cut(s)	739, 810, 911
BmsI	GCATC	2 cut(s)	322, 1030
BpmI	CTGGAG	2 cut(s)	831, 930
Bpu14I	TTCGAA	1 cut(s)	650
Bsa29I	ATCGAT	2 cut(s)	546, 821
BsaBI	GATNNNNATC	1 cut(s)	426
BsaI	GGTCTC	1 cut(s)	1005
BsaJI	CCNNGG	2 cut(s)	722, 737
BsaXI	ACNNNNNCTCC	2 cut(s)	1002, 1032
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 962
Bse1I	ACTGG	3 cut(s)	250, 309, 947
Bse8I	GATNNNNATC	1 cut(s)	426
BseBI	CCWGG	3 cut(s)	739, 810, 911
BseCI	ATCGAT	2 cut(s)	546, 821
BseDI	CCNNGG	2 cut(s)	722, 737
BseGI	GGATG	2 cut(s)	316, 1054
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	2 cut(s)	187, 962
BseMII	CTCAG	4 cut(s)	104, 120, 144, 387
BseNI	ACTGG	3 cut(s)	250, 309, 947
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	208
BsgI	GTGCAG	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	203
BshVI	ATCGAT	2 cut(s)	546, 821
BsiEI	CGRYCG	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	939
BslI	CCNNNNNNNGG	2 cut(s)	187, 962
BsmAI	GTCTC	4 cut(s)	155, 597, 894, 1005
BsmFI	GGGAC	1 cut(s)	939
BsmI	GAATGC	1 cut(s)	683
Bso31I	GGTCTC	1 cut(s)	1005
Bsp119I	TTCGAA	1 cut(s)	650
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	6 cut(s)	175, 313, 543, 547, 628, 829
BspACI	CCGC	1 cut(s)	67
BspCNI	CTCAG	4 cut(s)	103, 119, 145, 388
BspDI	ATCGAT	2 cut(s)	546, 821
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	205, 1082
BspT104I	TTCGAA	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	1005
BsrI	ACTGG	3 cut(s)	250, 309, 947
BssECI	CCNNGG	2 cut(s)	722, 737
BssMI	GATC	6 cut(s)	175, 313, 543, 547, 628, 829
BssT1I	CCWWGG	1 cut(s)	722
Bst2UI	CCWGG	3 cut(s)	739, 810, 911
Bst4CI	ACNGT	4 cut(s)	76, 592, 599, 876
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstBI	TTCGAA	1 cut(s)	650
BstDEI	CTNAG	4 cut(s)	90, 106, 153, 396
BstF5I	GGATG	2 cut(s)	316, 1054
BstFNI	CGCG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	6 cut(s)	178, 316, 546, 550, 631, 832
BstMAI	GTCTC	4 cut(s)	155, 597, 894, 1005
BstMBI	GATC	6 cut(s)	175, 313, 543, 547, 628, 829
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	3 cut(s)	739, 810, 911
BstSCI	CCNGG	3 cut(s)	737, 808, 909
BstSFI	CTRYAG	2 cut(s)	447, 598
BstSLI	GKGCMC	1 cut(s)	208
BstUI	CGCG	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	829
BstYI	RGATCY	1 cut(s)	829
Bsu15I	ATCGAT	2 cut(s)	546, 821
BsuI	GTATCC	1 cut(s)	922
BsuTUI	ATCGAT	2 cut(s)	546, 821
BtsCI	GGATG	2 cut(s)	316, 1054
BtsIMutI	CAGTG	3 cut(s)	72, 302, 878
CaiI	CAGNNNCTG	1 cut(s)	880
CfoI	GCGC	1 cut(s)	200
ClaI	ATCGAT	2 cut(s)	546, 821
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	719
CviAII	CATG	2 cut(s)	224, 1086
CviQI	GTAC	1 cut(s)	719
DdeI	CTNAG	4 cut(s)	90, 106, 153, 396
DpnI	GATC	6 cut(s)	177, 315, 545, 549, 630, 831
DpnII	GATC	6 cut(s)	175, 313, 543, 547, 628, 829
Eco130I	CCWWGG	1 cut(s)	722
Eco31I	GGTCTC	1 cut(s)	1005
Eco57I	CTGAAG	1 cut(s)	866
EcoRII	CCWGG	3 cut(s)	737, 808, 909
EcoT14I	CCWWGG	1 cut(s)	722
ErhI	CCWWGG	1 cut(s)	722
FaeI	CATG	2 cut(s)	227, 1089
FalI	AAGNNNNNCTT	4 cut(s)	321, 353, 743, 775
FaqI	GGGAC	1 cut(s)	939
FatI	CATG	2 cut(s)	223, 1085
FauI	CCCGC	1 cut(s)	74
FokI	GGATG	2 cut(s)	323, 1061
FspBI	CTAG	2 cut(s)	116, 281
GlaI	GCGC	1 cut(s)	199
GsuI	CTGGAG	2 cut(s)	831, 930
HaeII	RGCGCY	1 cut(s)	201
HapII	CCGG	1 cut(s)	285
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	227, 1089
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	2 cut(s)	150, 595
HindII	GTYRAC	2 cut(s)	150, 595
HindIII	AAGCTT	1 cut(s)	697
HinfI	GANTC	6 cut(s)	410, 605, 707, 744, 887, 970
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	3 cut(s)	470, 626, 934
Hpy166II	GTNNAC	4 cut(s)	150, 325, 595, 806
Hpy188I	TCNGA	8 cut(s)	18, 60, 364, 393, 417, 481, 846, 1003
Hpy188III	TCNNGA	1 cut(s)	45
Hpy8I	GTNNAC	4 cut(s)	150, 325, 595, 806
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	2 cut(s)	369, 535
HpyCH4III	ACNGT	4 cut(s)	76, 592, 599, 876
HpyCH4IV	ACGT	2 cut(s)	802, 1071
HpyCH4V	TGCA	6 cut(s)	167, 267, 335, 634, 827, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	4 cut(s)	90, 106, 153, 396
HpySE526I	ACGT	2 cut(s)	802, 1071
Hsp92II	CATG	2 cut(s)	227, 1089
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	6 cut(s)	175, 313, 543, 547, 628, 829
LmnI	GCTCC	1 cut(s)	527
LweI	GCATC	2 cut(s)	322, 1030
MaeI	CTAG	2 cut(s)	116, 281
MaeII	ACGT	2 cut(s)	802, 1071
MaeIII	GTNAC	5 cut(s)	70, 458, 772, 876, 922
MalI	GATC	6 cut(s)	177, 315, 545, 549, 630, 831
MboI	GATC	6 cut(s)	175, 313, 543, 547, 628, 829
MboII	GAAGA	7 cut(s)	341, 664, 800, 824, 1021, 1024, 1027
MflI	RGATCY	1 cut(s)	829
MhlI	GDGCHC	1 cut(s)	208
MlyI	GAGTC	2 cut(s)	599, 896
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	8 cut(s)	136, 577, 658, 697, 954, 959, 976, 1060
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	1 cut(s)	990
MspA1I	CMGCKG	1 cut(s)	516
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	3 cut(s)	739, 810, 911
Mva1269I	GAATGC	1 cut(s)	683
MvaI	CCWGG	3 cut(s)	739, 810, 911
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeII	GATC	6 cut(s)	175, 313, 543, 547, 628, 829
NlaIII	CATG	2 cut(s)	227, 1089
NlaIV	GGNNCC	2 cut(s)	205, 1082
NmeAIII	GCCGAG	2 cut(s)	283, 820
NmuCI	GTSAC	4 cut(s)	70, 458, 876, 922
NspV	TTCGAA	1 cut(s)	650
PctI	GAATGC	1 cut(s)	683
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	4 cut(s)	410, 707, 744, 970
PflFI	GACNNNGTC	1 cut(s)	1016
PfoI	TCCNGGA	1 cut(s)	909
Ple19I	CGATCG	1 cut(s)	178
PleI	GAGTC	2 cut(s)	599, 895
PpsI	GAGTC	2 cut(s)	599, 895
Psp6I	CCWGG	3 cut(s)	737, 808, 909
PspGI	CCWGG	3 cut(s)	737, 808, 909
PspN4I	GGNNCC	2 cut(s)	205, 1082
PstNI	CAGNNNCTG	1 cut(s)	880
PsuI	RGATCY	1 cut(s)	829
PsyI	GACNNNGTC	1 cut(s)	1016
PvuI	CGATCG	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	516
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
SaqAI	TTAA	1 cut(s)	990
Sau3AI	GATC	6 cut(s)	175, 313, 543, 547, 628, 829
SchI	GAGTC	2 cut(s)	599, 896
ScrFI	CCNGG	3 cut(s)	739, 810, 911
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	2 cut(s)	322, 1030
SfcI	CTRYAG	2 cut(s)	447, 598
SfuI	TTCGAA	1 cut(s)	650
SsiI	CCGC	1 cut(s)	67
SspI	AATATT	2 cut(s)	621, 647
SspMI	CTAG	2 cut(s)	116, 281
StyD4I	CCNGG	3 cut(s)	737, 808, 909
StyI	CCWWGG	1 cut(s)	722
TaaI	ACNGT	4 cut(s)	76, 592, 599, 876
TaiI	ACGT	2 cut(s)	805, 1074
TaqI	TCGA	7 cut(s)	546, 569, 650, 675, 821, 1038, 1065
TfiI	GAWTC	4 cut(s)	410, 707, 744, 970
Tru1I	TTAA	1 cut(s)	990
Tru9I	TTAA	1 cut(s)	990
TscAI	CASTG	3 cut(s)	79, 309, 885
TseFI	GTSAC	4 cut(s)	70, 458, 876, 922
Tsp45I	GTSAC	4 cut(s)	70, 458, 876, 922
TspDTI	ATGAA	1 cut(s)	381
TspGWI	ACGGA	2 cut(s)	68, 941
TspRI	CASTG	3 cut(s)	79, 309, 885
Tth111I	GACNNNGTC	1 cut(s)	1016
XapI	RAATTY	5 cut(s)	40, 49, 101, 494, 1024
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	2 cut(s)	116, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.