Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006649

Physical Location & Seq

Genomic Coordinates Forward (+)

12985661 .. 12987521

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGATCCTTATAAGAATCTTAATCCAAAAGGTTACCAGAGACAGAGACCGTTTAGCTCAGCCGGCGAGAGTGGCGGCAGCGGCGGCTCCGGTACGGCCCATGAAACAGATGACAATAAGAAGAAGAAGAAGCTTCTCCACCGCGACATCGAACGCCAAAGAAGACAAGAAATGGCTACACTCTTTGCTACTCTTCGTACTCACTTACCTCTTAAATACATCAAGGGAAAAAGAGCTGTGTCGGATCATGTAAATGGAGCGGTAAATTTCATTAAGGACACGGAAGCACGGATTAAAGAACTTAGTGCAAGAAGAGACGAGTTAAGTAGAGAAACCGGCCAAGGATATAAATCGAATCCGGATCCAGGAAAAACTGGATCCGATGTAGGCAAATCGGAGCCGGCGACTGTGATGGTGCAACCACACGTGAGCGGTTTAGAAGTGGTAGTGAGCAGCAACTCCTCAGGCCCCGAAGCTTTGCCACTATCAAAAGTGCTCGAGACAATTCAGGAGAAAGGGCTTGAAGTCATGAGCTCCTTCACTACAAGAGTCAATGATAGGCTCATGCACACTATTCAAGTAGAGGTTAATAGTTTCGGATGCATAGACTTATTATGGTTGCAGCAGAAGCTAGTTGAGGATTTGATACTTTCGACGGGGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

221

Amino Acids

24.46

Weight (kDa)

9.08

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	44 - 93	1.5e-08	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25400 AT4G25400 AT4G25410 AT5G51780 AT5G51780 AT5G51790 AT5G51790 AT5G51790 AT5G51790
fragaria_vesca	FvH4_7g28600 FvH4_7g28600 FvH4_7g28600
malus_domestica	MD01G1191600.v1.1
prunus_persica	Prupe.2G286000_v2.0.a1 Prupe.2G286000_v2.0.a1
pyrus_communis	pycom01g20280 pycom07g23850
rosa_chinensis	RchiOBHm_Chr1g0376011
rosa_laevigata	RLG00000026635
rosa_multiflora	Rmu_ssc0000116.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282420
rosa_rugosa	Rorug01G0393700
rosa_samantha	Rh1BG368500 Rh1CG381400 Rh1DG398400
rosa_wichuraiana	Rw1G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AccBSI	CCGCTC	2 cut(s)	260, 432
AccII	CGCG	1 cut(s)	144
AccIII	TCCGGA	1 cut(s)	358
AciI	CCGC	6 cut(s)	75, 81, 84, 142, 260, 432
AclWI	GGATC	6 cut(s)	12, 252, 356, 369, 372, 385
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	265
AcvI	CACGTG	1 cut(s)	427
AfaI	GTAC	3 cut(s)	94, 199, 662
AfiI	CCNNNNNNNGG	1 cut(s)	365
AflIII	ACRYGT	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	524, 578
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	6 cut(s)	57, 133, 236, 476, 534, 631
AluI	AGCT	6 cut(s)	57, 133, 236, 476, 534, 631
Alw21I	GWGCWC	2 cut(s)	498, 536
Alw26I	GTCTC	4 cut(s)	34, 40, 309, 494
AlwI	GGATC	6 cut(s)	12, 252, 356, 369, 372, 385
Ama87I	CYCGRG	1 cut(s)	497
Aor13HI	TCCGGA	1 cut(s)	358
AoxI	GGCC	3 cut(s)	96, 337, 466
ApeKI	GCWGC	3 cut(s)	78, 453, 622
ApoI	RAATTY	1 cut(s)	265
AspS9I	GGNCC	2 cut(s)	97, 467
AvaI	CYCGRG	1 cut(s)	497
AxyI	CCTNAGG	1 cut(s)	463
BamHI	GGATCC	3 cut(s)	4, 361, 377
BanII	GRGCYC	1 cut(s)	536
BbrPI	CACGTG	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	2 cut(s)	498, 536
BbvI	GCAGC	3 cut(s)	90, 465, 634
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	4 cut(s)	34, 40, 309, 494
BfaI	CTAG	1 cut(s)	632
BisI	GCNGC	6 cut(s)	76, 79, 82, 85, 454, 623
BlpI	GCTNAGC	1 cut(s)	58
BlsI	GCNGC	6 cut(s)	77, 80, 83, 86, 455, 624
Bme1390I	CCNGG	1 cut(s)	366
BmeT110I	CYCGRG	1 cut(s)	497
BmgT120I	GGNCC	2 cut(s)	97, 467
BmiI	GGNNCC	6 cut(s)	6, 88, 363, 379, 399, 469
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	590
BpiI	GAAGAC	1 cut(s)	169
Bpu1102I	GCTNAGC	1 cut(s)	58
BsaAI	YACGTR	1 cut(s)	427
BsaBI	GATNNNNATC	1 cut(s)	349
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	340
BsaWI	WCCGGW	2 cut(s)	89, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse118I	RCCGGY	3 cut(s)	62, 335, 400
Bse1I	ACTGG	1 cut(s)	379
Bse21I	CCTNAGG	1 cut(s)	463
Bse8I	GATNNNNATC	1 cut(s)	349
BseAI	TCCGGA	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	605
BseJI	GATNNNNATC	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMII	CTCAG	2 cut(s)	72, 477
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	1 cut(s)	451
BseXI	GCAGC	3 cut(s)	90, 465, 634
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	3 cut(s)	98, 339, 468
BsiHKAI	GWGCWC	2 cut(s)	498, 536
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	5 cut(s)	63, 90, 336, 359, 401
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	4 cut(s)	34, 40, 309, 494
BsmBI	CGTCTC	1 cut(s)	309
BsnI	GGCC	3 cut(s)	98, 339, 468
Bso31I	GGTCTC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	497
Bsp1286I	GDGCHC	2 cut(s)	498, 536
Bsp13I	TCCGGA	1 cut(s)	358
Bsp143I	GATC	4 cut(s)	4, 244, 361, 377
Bsp1720I	GCTNAGC	1 cut(s)	58
BspACI	CCGC	6 cut(s)	75, 81, 84, 142, 260, 432
BspANI	GGCC	3 cut(s)	98, 339, 468
BspCNI	CTCAG	2 cut(s)	71, 476
BspEI	TCCGGA	1 cut(s)	358
BspFNI	CGCG	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	528
BspLI	GGNNCC	6 cut(s)	6, 88, 363, 379, 399, 469
BspPI	GGATC	6 cut(s)	12, 252, 356, 369, 372, 385
BspTNI	GGTCTC	1 cut(s)	40
BsrBI	CCGCTC	2 cut(s)	260, 432
BsrFI	RCCGGY	3 cut(s)	62, 335, 400
BsrI	ACTGG	1 cut(s)	379
BssAI	RCCGGY	3 cut(s)	62, 335, 400
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	4 cut(s)	4, 244, 361, 377
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	51, 409
Bst6I	CTCTTC	2 cut(s)	198, 307
BstBAI	YACGTR	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	64, 402
BstDEI	CTNAG	3 cut(s)	58, 302, 463
BstEII	GGTNACC	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	605
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	4 cut(s)	7, 247, 364, 380
BstMAI	GTCTC	4 cut(s)	34, 40, 309, 494
BstMBI	GATC	4 cut(s)	4, 244, 361, 377
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 72, 81, 84, 628
BstNI	CCWGG	1 cut(s)	366
BstPI	GGTNACC	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	364
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	90, 465, 634
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	3 cut(s)	4, 361, 377
BstYI	RGATCY	3 cut(s)	4, 361, 377
Bsu36I	CCTNAGG	1 cut(s)	463
BsuRI	GGCC	3 cut(s)	98, 339, 468
BtsCI	GGATG	1 cut(s)	605
Cac8I	GCNNGC	2 cut(s)	64, 402
CciI	TCATGA	1 cut(s)	528
Cfr10I	RCCGGY	3 cut(s)	62, 335, 400
Cfr13I	GGNCC	2 cut(s)	97, 467
Csp6I	GTAC	3 cut(s)	93, 198, 661
CviAII	CATG	4 cut(s)	101, 248, 529, 565
CviQI	GTAC	3 cut(s)	93, 198, 661
DdeI	CTNAG	3 cut(s)	58, 302, 463
DpnI	GATC	4 cut(s)	6, 246, 363, 379
DpnII	GATC	4 cut(s)	4, 244, 361, 377
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	2 cut(s)	198, 307
EarI	CTCTTC	2 cut(s)	198, 307
Ecl136II	GAGCTC	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	536
Eco31I	GGTCTC	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	534
Eco72I	CACGTG	1 cut(s)	427
Eco81I	CCTNAGG	1 cut(s)	463
Eco88I	CYCGRG	1 cut(s)	497
Eco91I	GGTNACC	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	467
EcoO65I	GGTNACC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	340
EcoT22I	ATGCAT	1 cut(s)	605
EcoT38I	GRGCYC	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	340
Esp3I	CGTCTC	1 cut(s)	309
FaeI	CATG	4 cut(s)	104, 251, 532, 568
FaiI	YATR	8 cut(s)	12, 102, 249, 348, 530, 566, 605, 616
FatI	CATG	4 cut(s)	100, 247, 528, 564
Fnu4HI	GCNGC	6 cut(s)	76, 79, 82, 85, 454, 623
FokI	GGATG	1 cut(s)	612
FriOI	GRGCYC	1 cut(s)	536
Fsp4HI	GCNGC	6 cut(s)	76, 79, 82, 85, 454, 623
FspBI	CTAG	1 cut(s)	632
GluI	GCNGC	6 cut(s)	76, 79, 82, 85, 454, 623
HaeIII	GGCC	3 cut(s)	98, 339, 468
HapII	CCGG	5 cut(s)	63, 90, 336, 359, 401
Hin1II	CATG	4 cut(s)	104, 251, 532, 568
HindIII	AAGCTT	2 cut(s)	131, 474
HinfI	GANTC	3 cut(s)	16, 355, 549
HpaII	CCGG	5 cut(s)	63, 90, 336, 359, 401
Hpy188I	TCNGA	4 cut(s)	244, 382, 397, 599
Hpy188III	TCNNGA	4 cut(s)	359, 499, 509, 529
Hpy99I	CGWCG	1 cut(s)	658
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	2 cut(s)	51, 409
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	5 cut(s)	308, 418, 568, 603, 622
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 72, 81, 84, 628
HpyF3I	CTNAG	3 cut(s)	58, 302, 463
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	4 cut(s)	104, 251, 532, 568
Kpn2I	TCCGGA	1 cut(s)	358
KroI	GCCGGC	2 cut(s)	62, 400
KroNI	GCCGGC	2 cut(s)	64, 402
Kzo9I	GATC	4 cut(s)	4, 244, 361, 377
LmnI	GCTCC	4 cut(s)	92, 257, 397, 539
Lsp1109I	GCAGC	3 cut(s)	90, 465, 634
LweI	GCATC	1 cut(s)	590
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	4 cut(s)	6, 246, 363, 379
MbiI	CCGCTC	2 cut(s)	260, 432
MboI	GATC	4 cut(s)	4, 244, 361, 377
MboII	GAAGA	6 cut(s)	133, 136, 139, 174, 185, 324
MflI	RGATCY	3 cut(s)	4, 361, 377
MhlI	GDGCHC	2 cut(s)	498, 536
MluCI	AATT	2 cut(s)	265, 504
MlyI	GAGTC	1 cut(s)	558
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	4 cut(s)	219, 472, 577, 631
Mph1103I	ATGCAT	1 cut(s)	605
MroI	TCCGGA	1 cut(s)	358
MroNI	GCCGGC	2 cut(s)	62, 400
MseI	TTAA	6 cut(s)	21, 213, 273, 294, 323, 588
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	5 cut(s)	63, 90, 336, 359, 401
MspR9I	CCNGG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	5 cut(s)	63, 72, 81, 84, 628
NaeI	GCCGGC	2 cut(s)	64, 402
NdeII	GATC	4 cut(s)	4, 244, 361, 377
NgoMIV	GCCGGC	2 cut(s)	62, 400
NlaIII	CATG	4 cut(s)	104, 251, 532, 568
NlaIV	GGNNCC	6 cut(s)	6, 88, 363, 379, 399, 469
NsiI	ATGCAT	1 cut(s)	605
PaeR7I	CTCGAG	1 cut(s)	497
PagI	TCATGA	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PdiI	GCCGGC	2 cut(s)	64, 402
PfeI	GAWTC	2 cut(s)	16, 355
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	6 cut(s)	77, 80, 83, 86, 455, 624
PleI	GAGTC	1 cut(s)	557
PmaCI	CACGTG	1 cut(s)	427
PmlI	CACGTG	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	557
Ppu21I	YACGTR	1 cut(s)	427
PsiI	TTATAA	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	364
PspCI	CACGTG	1 cut(s)	427
PspEI	GGTNACC	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	6 cut(s)	6, 88, 363, 379, 399, 469
PspPI	GGNCC	2 cut(s)	97, 467
PsuI	RGATCY	3 cut(s)	4, 361, 377
RsaI	GTAC	3 cut(s)	94, 199, 662
RsaNI	GTAC	3 cut(s)	93, 198, 661
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	536
SaqAI	TTAA	6 cut(s)	21, 213, 273, 294, 323, 588
SatI	GCNGC	6 cut(s)	76, 79, 82, 85, 454, 623
Sau3AI	GATC	4 cut(s)	4, 244, 361, 377
Sau96I	GGNCC	2 cut(s)	97, 467
SchI	GAGTC	1 cut(s)	558
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	2 cut(s)	498, 536
SfaNI	GCATC	1 cut(s)	590
Sfr274I	CTCGAG	1 cut(s)	497
SlaI	CTCGAG	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	2 cut(s)	265, 504
SsiI	CCGC	6 cut(s)	75, 81, 84, 142, 260, 432
SspMI	CTAG	1 cut(s)	632
SstI	GAGCTC	1 cut(s)	536
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	2 cut(s)	51, 409
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	4 cut(s)	150, 353, 498, 653
TasI	AATT	2 cut(s)	265, 504
TauI	GCSGC	3 cut(s)	78, 84, 87
TfiI	GAWTC	2 cut(s)	16, 355
Tru1I	TTAA	6 cut(s)	21, 213, 273, 294, 323, 588
Tru9I	TTAA	6 cut(s)	21, 213, 273, 294, 323, 588
TseI	GCWGC	3 cut(s)	78, 453, 622
TspDTI	ATGAA	2 cut(s)	117, 259
TspGWI	ACGGA	2 cut(s)	296, 304
XapI	RAATTY	1 cut(s)	265
XhoI	CTCGAG	1 cut(s)	497
XspI	CTAG	1 cut(s)	632
Zsp2I	ATGCAT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.