Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006649

Physical Location & Seq

Genomic Coordinates Forward (+)

18655349 .. 18656306

Gene Structure 958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGATGTCGGTATGTTCAATAACCTTAATACAGGAGGCCAGCGGAGAAAATCATCATTAGCCCTGACTTCGGATGGTGCGAAAAATCAAGATAAGTCAAATGACGATGATGAGAAAAAGAAGGTGATGCATAGAGAAATCGAAAAGAAGAGAAGGCAAGAAATGGGCAACCTTTATGGATCACTTCGATCTGTACTTCCTCTTGAATTTATCAAGGGAAAACGTTCGTTGGCGGATCATATGAACGAGGCAGTGAATTATATCAAACAGCTGCAAACGAGAATCAAAATATTTGGTGCCAAGAGAGGTGAGCTAAAGATGGGGACAGCCTTGTCCAATTTGAGTGCTAGTACTCTTGGCCATGGGAGCAGTGGTAGCTCATCAACTGCAGCAAGTACCCTAGTTGCAGTCCACCCTTGCTTAGCCGGCGTTGAGATTGTAGTCAGTACCGGCCGATCTCCAGAGCAAGGTTTTCTCCTATCAAGAATGCTTAAAATACTGCTTGGACAAGGACTTAATGTAATCAGCTGTTCTACTACCCAGGTTAACAGAAGACTTGTCTACACCATCCAATCTGAGGTTAGCGATCCAACATGCATAGACTTTTCTGGGTTGCAGCAGATTCTGACTGAAGCCTGTCATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

216

Amino Acids

23.45

Weight (kDa)

9.46

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25400 AT4G25400 AT4G25410 AT5G51780 AT5G51780 AT5G51790 AT5G51790 AT5G51790 AT5G51790
fragaria_vesca	FvH4_7g28600 FvH4_7g28600 FvH4_7g28600
malus_domestica	MD01G1191600.v1.1
prunus_persica	Prupe.2G286000_v2.0.a1 Prupe.2G286000_v2.0.a1
pyrus_communis	pycom01g20280 pycom07g23850
rosa_chinensis	RchiOBHm_Chr1g0376011
rosa_laevigata	RLG00000026635
rosa_multiflora	Rmu_ssc0000116.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282420
rosa_rugosa	Rorug01G0393700
rosa_samantha	Rh1BG368500 Rh1CG381400 Rh1DG398400
rosa_wichuraiana	Rw1G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	561
AciI	CCGC	2 cut(s)	43, 233
AclI	AACGTT	1 cut(s)	223
AclWI	GGATC	3 cut(s)	187, 243, 581
AcoI	YGGCCR	2 cut(s)	358, 451
AcsI	RAATTY	1 cut(s)	206
AfaI	GTAC	4 cut(s)	195, 352, 397, 448
AfiI	CCNNNNNNNGG	3 cut(s)	70, 467, 577
AgsI	TTSAA	2 cut(s)	19, 206
AjnI	CCWGG	1 cut(s)	540
AluBI	AGCT	4 cut(s)	271, 313, 378, 528
AluI	AGCT	4 cut(s)	271, 313, 378, 528
AlwI	GGATC	3 cut(s)	187, 243, 581
AlwNI	CAGNNNCTG	1 cut(s)	625
AoxI	GGCC	3 cut(s)	37, 358, 451
ApeKI	GCWGC	3 cut(s)	271, 389, 616
ApoI	RAATTY	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	223
AsuHPI	GGTGA	2 cut(s)	136, 320
BalI	TGGCCA	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	559
BbvI	GCAGC	3 cut(s)	258, 401, 628
BccI	CCATC	3 cut(s)	68, 313, 575
BciT130I	CCWGG	1 cut(s)	542
BfaI	CTAG	2 cut(s)	348, 401
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	3 cut(s)	272, 390, 617
BlpI	GCTNAGC	1 cut(s)	421
BlsI	GCNGC	3 cut(s)	273, 391, 618
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	542
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	1 cut(s)	542
BmsI	GCATC	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	559
BpmI	CTGGAG	1 cut(s)	444
Bpu1102I	GCTNAGC	1 cut(s)	421
BsaJI	CCNNGG	2 cut(s)	361, 540
BsaXI	ACNNNNNCTCC	2 cut(s)	358, 388
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 467, 577
Bse118I	RCCGGY	2 cut(s)	425, 449
BseBI	CCWGG	1 cut(s)	542
BseDI	CCNNGG	2 cut(s)	361, 540
BseGI	GGATG	3 cut(s)	10, 79, 567
BseLI	CCNNNNNNNGG	3 cut(s)	70, 467, 577
BseMII	CTCAG	1 cut(s)	567
BseX3I	CGGCCG	1 cut(s)	451
BseXI	GCAGC	3 cut(s)	258, 401, 628
Bsh1285I	CGRYCG	1 cut(s)	454
BshFI	GGCC	3 cut(s)	39, 360, 453
BshNI	GGYRCC	1 cut(s)	296
BsiEI	CGRYCG	1 cut(s)	454
BsiSI	CCGG	2 cut(s)	426, 450
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	3 cut(s)	70, 467, 577
BsmFI	GGGAC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	3 cut(s)	39, 360, 453
Bsp143I	GATC	5 cut(s)	179, 188, 235, 455, 586
Bsp1720I	GCTNAGC	1 cut(s)	421
Bsp19I	CCATGG	1 cut(s)	361
BspACI	CCGC	2 cut(s)	43, 233
BspANI	GGCC	3 cut(s)	39, 360, 453
BspCNI	CTCAG	1 cut(s)	568
BspLI	GGNNCC	1 cut(s)	298
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	3 cut(s)	187, 243, 581
BspT107I	GGYRCC	1 cut(s)	296
BsrFI	RCCGGY	2 cut(s)	425, 449
BssAI	RCCGGY	2 cut(s)	425, 449
BssECI	CCNNGG	2 cut(s)	361, 540
BssMI	GATC	5 cut(s)	179, 188, 235, 455, 586
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	542
Bst6I	CTCTTC	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	41, 427
BstDEI	CTNAG	2 cut(s)	421, 576
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	3 cut(s)	10, 79, 567
BstKTI	GATC	5 cut(s)	182, 191, 238, 458, 589
BstMBI	GATC	5 cut(s)	179, 188, 235, 455, 586
BstMCI	CGRYCG	1 cut(s)	454
BstMWI	GCNNNNNNNGC	3 cut(s)	366, 375, 426
BstNI	CCWGG	1 cut(s)	542
BstNSI	RCATGY	1 cut(s)	597
BstSCI	CCNGG	1 cut(s)	540
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	258, 401, 628
BstV2I	GAAGAC	1 cut(s)	559
BstZI	CGGCCG	1 cut(s)	451
BsuRI	GGCC	3 cut(s)	39, 360, 453
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	3 cut(s)	10, 79, 567
BtsI	GCAGTG	2 cut(s)	258, 376
BtsIMutI	CAGTG	2 cut(s)	258, 376
Cac8I	GCNNGC	2 cut(s)	41, 427
CaiI	CAGNNNCTG	1 cut(s)	625
Cfr10I	RCCGGY	2 cut(s)	425, 449
Csp6I	GTAC	4 cut(s)	194, 351, 396, 447
CviAII	CATG	2 cut(s)	362, 594
CviQI	GTAC	4 cut(s)	194, 351, 396, 447
DdeI	CTNAG	2 cut(s)	421, 576
DpnI	GATC	5 cut(s)	181, 190, 237, 457, 588
DpnII	GATC	5 cut(s)	179, 188, 235, 455, 586
DrdI	GACNNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	331
EaeI	YGGCCR	2 cut(s)	358, 451
EagI	CGGCCG	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
EciI	GGCGGA	1 cut(s)	248
EclXI	CGGCCG	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	361
Eco52I	CGGCCG	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	540
EcoT14I	CCWWGG	1 cut(s)	361
EcoT22I	ATGCAT	2 cut(s)	132, 599
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	2 cut(s)	365, 597
FaiI	YATR	9 cut(s)	14, 132, 177, 240, 242, 261, 363, 595, 599
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	2 cut(s)	361, 593
FauNDI	CATATG	1 cut(s)	240
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	3 cut(s)	272, 390, 617
FokI	GGATG	3 cut(s)	17, 86, 554
Fsp4HI	GCNGC	3 cut(s)	272, 390, 617
FspBI	CTAG	2 cut(s)	348, 401
GluI	GCNGC	3 cut(s)	272, 390, 617
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	3 cut(s)	39, 360, 453
HapII	CCGG	2 cut(s)	426, 450
Hin1II	CATG	2 cut(s)	365, 597
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HinfI	GANTC	2 cut(s)	282, 622
HpaI	GTTAAC	1 cut(s)	547
HpaII	CCGG	2 cut(s)	426, 450
HphI	GGTGA	2 cut(s)	136, 320
Hpy166II	GTNNAC	3 cut(s)	412, 547, 562
Hpy188I	TCNGA	3 cut(s)	73, 577, 627
Hpy188III	TCNNGA	4 cut(s)	89, 203, 461, 483
Hpy8I	GTNNAC	3 cut(s)	412, 547, 562
HpyAV	CCTTC	2 cut(s)	115, 147
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	6 cut(s)	130, 274, 389, 407, 597, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	366, 375, 426
HpyF3I	CTNAG	2 cut(s)	421, 576
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	365, 597
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
KspAI	GTTAAC	1 cut(s)	547
Kzo9I	GATC	5 cut(s)	179, 188, 235, 455, 586
LmnI	GCTCC	1 cut(s)	366
LpnPI	CCDG	9 cut(s)	18, 53, 77, 439, 463, 474, 527, 554, 594
Lsp1109I	GCAGC	3 cut(s)	258, 401, 628
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	2 cut(s)	348, 401
MaeII	ACGT	1 cut(s)	223
MalI	GATC	5 cut(s)	181, 190, 237, 457, 588
MboI	GATC	5 cut(s)	179, 188, 235, 455, 586
MboII	GAAGA	2 cut(s)	160, 564
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	3 cut(s)	206, 256, 337
MluNI	TGGCCA	1 cut(s)	360
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	5 cut(s)	29, 210, 241, 299, 571
Mox20I	TGGCCA	1 cut(s)	360
Mph1103I	ATGCAT	2 cut(s)	132, 599
MroNI	GCCGGC	1 cut(s)	425
MroXI	GAANNNNTTC	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	360
MseI	TTAA	4 cut(s)	27, 492, 516, 546
Msp20I	TGGCCA	1 cut(s)	360
MspA1I	CMGCKG	3 cut(s)	43, 271, 528
MspI	CCGG	2 cut(s)	426, 450
MspR9I	CCNGG	1 cut(s)	542
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	3 cut(s)	366, 375, 426
NaeI	GCCGGC	1 cut(s)	427
NcoI	CCATGG	1 cut(s)	361
NdeI	CATATG	1 cut(s)	240
NdeII	GATC	5 cut(s)	179, 188, 235, 455, 586
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	2 cut(s)	365, 597
NlaIV	GGNNCC	1 cut(s)	298
NsiI	ATGCAT	2 cut(s)	132, 599
NspI	RCATGY	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PctI	GAATGC	1 cut(s)	492
PdiI	GCCGGC	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	282, 622
PkrI	GCNGC	3 cut(s)	273, 391, 618
Psp1406I	AACGTT	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	540
PspGI	CCWGG	1 cut(s)	540
PspN4I	GGNNCC	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	625
PvuII	CAGCTG	2 cut(s)	271, 528
RsaI	GTAC	4 cut(s)	195, 352, 397, 448
RsaNI	GTAC	4 cut(s)	194, 351, 396, 447
SaqAI	TTAA	4 cut(s)	27, 492, 516, 546
SatI	GCNGC	3 cut(s)	272, 390, 617
Sau3AI	GATC	5 cut(s)	179, 188, 235, 455, 586
ScaI	AGTACT	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	542
SfaNI	GCATC	1 cut(s)	117
SfcI	CTRYAG	1 cut(s)	387
Sse9I	AATT	3 cut(s)	206, 256, 337
SsiI	CCGC	2 cut(s)	43, 233
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	2 cut(s)	348, 401
StyD4I	CCNGG	1 cut(s)	540
StyI	CCWWGG	1 cut(s)	361
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	2 cut(s)	141, 187
TasI	AATT	3 cut(s)	206, 256, 337
TatI	WGTACW	2 cut(s)	193, 350
TfiI	GAWTC	2 cut(s)	282, 622
Tru1I	TTAA	4 cut(s)	27, 492, 516, 546
Tru9I	TTAA	4 cut(s)	27, 492, 516, 546
TscAI	CASTG	2 cut(s)	258, 376
TseI	GCWGC	3 cut(s)	271, 389, 616
TspDTI	ATGAA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	258, 376
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	597
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	223
XspI	CTAG	2 cut(s)	348, 401
ZrmI	AGTACT	1 cut(s)	352
Zsp2I	ATGCAT	2 cut(s)	132, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.