Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006649

Physical Location & Seq

Genomic Coordinates Forward (+)

65127178 .. 65127885

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG381400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGATGCATAGAGATATTGAAAGGAAAAGAAGACAAGAAATGGCCGCGCTTTATGCATCACTCAGATCCACACTCCCTCCTCAGTCTATCAAGGGAAAGCGTTCATTGGCAGATCATATGAACGACGCTGTGAATCATATAAAACACCTGCAAACGAGGATCAAAGAACTCGGTGCCCAGAGAGATGACCTAAAGATACAAACGTCGTCGCCGGATTTGAGTTGTACTAGTGCTCTTGGCCTAGCTGGGAATCTTAGTGGATCTACTGGTAGCTCTTCATCATTGTTAGCAGGCAACTTTTCAAGAAGCCGTGTTGCAGTCAACCCTTGCTTAGGTGGCGTTGAGATTGTAATAATCAGCTGTGTTACTGGTGCTTCTGCAGAGCCACAAGGTGTGGTCTTATCAAGATTGCTGCAAATACTGCTTGAACAAGGACTTACTGTAATTAATTGTGCTACTACCCAGGTTAACAAAAGGCTTGTATACACCATACAATCCGAGGTAGCTAGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

171

Amino Acids

18.35

Weight (kDa)

9.46

Isoelectric Point (pI)

66.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	2 - 51	4.3e-11	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25400 AT4G25400 AT4G25410 AT5G51780 AT5G51780 AT5G51790 AT5G51790 AT5G51790 AT5G51790
fragaria_vesca	FvH4_7g28600 FvH4_7g28600 FvH4_7g28600
malus_domestica	MD01G1191600.v1.1
prunus_persica	Prupe.2G286000_v2.0.a1 Prupe.2G286000_v2.0.a1
pyrus_communis	pycom01g20280 pycom07g23850
rosa_chinensis	RchiOBHm_Chr1g0376011
rosa_laevigata	RLG00000026635
rosa_multiflora	Rmu_ssc0000116.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282420
rosa_rugosa	Rorug01G0393700
rosa_samantha	Rh1BG368500 Rh1CG381400 Rh1DG398400
rosa_wichuraiana	Rw1G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	156
Acc36I	ACCTGC	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	47
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	3 cut(s)	60, 167, 268
AcoI	YGGCCR	1 cut(s)	42
AdeI	CACNNNGTG	1 cut(s)	392
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	3 cut(s)	20, 303, 428
AhlI	ACTAGT	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	462
AluBI	AGCT	4 cut(s)	245, 273, 360, 506
AluI	AGCT	4 cut(s)	245, 273, 360, 506
Alw21I	GWGCWC	1 cut(s)	235
AlwI	GGATC	3 cut(s)	60, 167, 268
AoxI	GGCC	2 cut(s)	42, 238
ApeKI	GCWGC	1 cut(s)	412
AseI	ATTAAT	1 cut(s)	447
Asp700I	GAANNNNTTC	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	178
BaeI	ACNNNNGTAYC	2 cut(s)	188, 221
BanI	GGYRCC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	399
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	464
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	3 cut(s)	228, 242, 507
BfmI	CTRYAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	156
BisI	GCNGC	2 cut(s)	45, 413
BlsI	GCNGC	2 cut(s)	46, 414
Bme1390I	CCNGG	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	331
BsaJI	CCNNGG	2 cut(s)	462, 498
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	271, 373
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	2 cut(s)	462, 498
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	2 cut(s)	76, 95
BseNI	ACTGG	2 cut(s)	271, 373
BseRI	GAGGAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	399
BseYI	CCCAGC	1 cut(s)	245
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	44, 240
BshNI	GGYRCC	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	332
BsnI	GGCC	2 cut(s)	44, 240
Bsp1286I	GDGCHC	2 cut(s)	178, 235
Bsp143I	GATC	4 cut(s)	65, 112, 159, 260
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	2 cut(s)	44, 240
BspCNI	CTCAG	2 cut(s)	75, 94
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	175
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	156
BspPI	GGATC	3 cut(s)	60, 167, 268
BspQI	GCTCTTC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	271, 373
BssECI	CCNNGG	2 cut(s)	462, 498
BssMI	GATC	4 cut(s)	65, 112, 159, 260
BssNAI	GTATAC	1 cut(s)	484
Bst1107I	GTATAC	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	1 cut(s)	442
Bst6I	CTCTTC	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	421
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	4 cut(s)	62, 81, 254, 331
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	4 cut(s)	68, 115, 162, 263
BstMBI	GATC	4 cut(s)	65, 112, 159, 260
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 336, 421
BstNI	CCWGG	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	462
BstSFI	CTRYAG	1 cut(s)	378
BstSLI	GKGCMC	1 cut(s)	178
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	399
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	2 cut(s)	65, 260
BstYI	RGATCY	2 cut(s)	65, 260
BstZ17I	GTATAC	1 cut(s)	484
BsuRI	GGCC	2 cut(s)	44, 240
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	292
CfoI	GCGC	1 cut(s)	49
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	225
CviJI	RGCY	9 cut(s)	44, 240, 245, 273, 309, 360, 385, 478, 506
CviKI_1	RGCY	9 cut(s)	44, 240, 245, 273, 309, 360, 385, 478, 506
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	4 cut(s)	62, 81, 254, 331
DpnI	GATC	4 cut(s)	67, 114, 161, 262
DpnII	GATC	4 cut(s)	65, 112, 159, 260
DraIII	CACNNNGTG	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
EcoNI	CCTNNNNNAGG	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	462
EcoT22I	ATGCAT	2 cut(s)	9, 58
FaiI	YATR	8 cut(s)	9, 54, 117, 119, 138, 140, 484, 491
FauNDI	CATATG	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	2 cut(s)	45, 413
Fsp4HI	GCNGC	2 cut(s)	45, 413
FspBI	CTAG	3 cut(s)	228, 242, 507
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	2 cut(s)	45, 413
GsaI	CCCAGC	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	44, 240
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	2 cut(s)	322, 469
HindII	GTYRAC	2 cut(s)	322, 469
HinfI	GANTC	2 cut(s)	133, 250
HpaI	GTTAAC	1 cut(s)	469
HpaII	CCGG	1 cut(s)	212
Hpy166II	GTNNAC	3 cut(s)	322, 469, 484
Hpy188I	TCNGA	2 cut(s)	65, 499
Hpy188III	TCNNGA	2 cut(s)	303, 405
Hpy8I	GTNNAC	3 cut(s)	322, 469, 484
Hpy99I	CGWCG	3 cut(s)	128, 208, 211
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	6 cut(s)	7, 56, 151, 317, 380, 415
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 336, 421
HpyF3I	CTNAG	4 cut(s)	62, 81, 254, 331
HpySE526I	ACGT	1 cut(s)	203
HspAI	GCGC	1 cut(s)	47
KspAI	GTTAAC	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	65, 112, 159, 260
LguI	GCTCTTC	1 cut(s)	280
LpnPI	CCDG	9 cut(s)	161, 191, 225, 231, 252, 276, 354, 449, 476
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	3 cut(s)	228, 242, 507
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	4 cut(s)	67, 114, 161, 262
MboI	GATC	4 cut(s)	65, 112, 159, 260
MboII	GAAGA	2 cut(s)	42, 267
MflI	RGATCY	2 cut(s)	65, 260
MhlI	GDGCHC	2 cut(s)	178, 235
MluCI	AATT	2 cut(s)	444, 448
MnlI	CCTC	4 cut(s)	87, 90, 150, 493
Mph1103I	ATGCAT	2 cut(s)	9, 58
MroXI	GAANNNNTTC	1 cut(s)	100
MseI	TTAA	3 cut(s)	447, 468, 514
MspA1I	CMGCKG	1 cut(s)	360
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	53, 336, 421
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	4 cut(s)	65, 112, 159, 260
NlaIV	GGNNCC	1 cut(s)	175
NsiI	ATGCAT	2 cut(s)	9, 58
PaqCI	CACCTGC	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	133, 250
PkrI	GCNGC	2 cut(s)	46, 414
PshBI	ATTAAT	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	462
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	175
PstI	CTGCAG	1 cut(s)	382
PsuI	RGATCY	2 cut(s)	65, 260
PvuII	CAGCTG	1 cut(s)	360
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	280
SaqAI	TTAA	3 cut(s)	447, 468, 514
SatI	GCNGC	2 cut(s)	45, 413
Sau3AI	GATC	4 cut(s)	65, 112, 159, 260
ScrFI	CCNGG	1 cut(s)	464
SduI	GDGCHC	2 cut(s)	178, 235
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	1 cut(s)	378
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	2 cut(s)	444, 448
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	3 cut(s)	228, 242, 507
StyD4I	CCNGG	1 cut(s)	462
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	1 cut(s)	206
TasI	AATT	2 cut(s)	444, 448
TatI	WGTACW	1 cut(s)	224
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	133, 250
Tru1I	TTAA	3 cut(s)	447, 468, 514
Tru9I	TTAA	3 cut(s)	447, 468, 514
TseI	GCWGC	1 cut(s)	412
TspDTI	ATGAA	3 cut(s)	93, 134, 267
VspI	ATTAAT	1 cut(s)	447
XagI	CCTNNNNNAGG	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	100
XspI	CTAG	3 cut(s)	228, 242, 507
Zsp2I	ATGCAT	2 cut(s)	9, 58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.