Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006649

Physical Location & Seq

Genomic Coordinates Forward (+)

21182119 .. 21183498

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28600.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGATAATGATCAACCTTGTGCGAATTCCATTATTGACAATAACCAAAAGAAGATGATGCATAGAGATACTGAAAGGAAAAGAAGACAAGAAATGGCCACCCTTTATGCATCACTAAGATCCACACTGCCTCCTCAATCTATGAAGGGAAAACGTTCATTGGCAGATCATATGAACGAGGCTGTGAATTATATTAAACTCCTGCAAACCAGGATCAAGGAACTTGGTTCCCGGAGAGACGACCTAAAGATACAAAGGTCGTCGCCAGATTTGAGTAGTACTAGTGCTCTTGGCCTGGATGGGAATCTTAGTGGATCTACTGGTAGCTCTTCTTCATTGTTAGCAGGAAACTTTTCAACCAGCCGTGCTGTAGTCAACCCTTGCTTAGGTGGCGTTGAGATTGTAATCAGTTGTGTTACTGGTGTGGTCTTATCAAGACTGCTGCAAATACTGCTTGAACAAGGACTTACTGTAACTAATTGTGCTACTACCCATGTTAACAAAAGGCTTGTCTACACCATCCAATCCGAGGTTAGCAATCCATCATGTATAGACTTTCCTGGGCTGGAGCAGACACTCACTAAAGTCATCTCATCATCCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

202

Amino Acids

21.88

Weight (kDa)

9.06

Isoelectric Point (pI)

60.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25400 AT4G25400 AT4G25410 AT5G51780 AT5G51780 AT5G51790 AT5G51790 AT5G51790 AT5G51790
fragaria_vesca	FvH4_7g28600 FvH4_7g28600 FvH4_7g28600
malus_domestica	MD01G1191600.v1.1
prunus_persica	Prupe.2G286000_v2.0.a1 Prupe.2G286000_v2.0.a1
pyrus_communis	pycom01g20280 pycom07g23850
rosa_chinensis	RchiOBHm_Chr1g0376011
rosa_laevigata	RLG00000026635
rosa_multiflora	Rmu_ssc0000116.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282420
rosa_rugosa	Rorug01G0393700
rosa_samantha	Rh1BG368500 Rh1CG381400 Rh1DG398400
rosa_wichuraiana	Rw1G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	513
AclI	AACGTT	1 cut(s)	154
AclWI	GGATC	3 cut(s)	114, 221, 322
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	25
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	2 cut(s)	386, 529
AgsI	TTSAA	2 cut(s)	357, 458
AhlI	ACTAGT	1 cut(s)	281
AjnI	CCWGG	3 cut(s)	209, 294, 559
AluBI	AGCT	1 cut(s)	327
AluI	AGCT	1 cut(s)	327
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	3 cut(s)	114, 221, 322
AoxI	GGCC	2 cut(s)	96, 292
ApeKI	GCWGC	1 cut(s)	442
ApoI	RAATTY	1 cut(s)	25
ArsI	GACNNNNNNTTYG	2 cut(s)	495, 527
Asp700I	GAANNNNTTC	2 cut(s)	154, 352
AsuC2I	CCSGG	1 cut(s)	232
BaeI	ACNNNNGTAYC	2 cut(s)	242, 275
BalI	TGGCCA	1 cut(s)	98
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
BbsI	GAAGAC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	3 cut(s)	293, 527, 550
BceAI	ACGGC	1 cut(s)	348
BciT130I	CCWGG	3 cut(s)	211, 296, 561
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	231
BcuI	ACTAGT	1 cut(s)	281
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	1 cut(s)	443
BlsI	GCNGC	1 cut(s)	444
BmcAI	AGTACT	1 cut(s)	280
Bme1390I	CCNGG	4 cut(s)	211, 232, 296, 561
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	4 cut(s)	211, 232, 296, 561
BmsI	GCATC	2 cut(s)	48, 119
BpiI	GAAGAC	1 cut(s)	91
BpmI	CTGGAG	1 cut(s)	587
Bpu10I	CCTNAGC	1 cut(s)	385
BpuMI	CCSGG	1 cut(s)	232
BsaBI	GATNNNNATC	3 cut(s)	9, 303, 404
BsaJI	CCNNGG	2 cut(s)	528, 560
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 529
Bse1I	ACTGG	2 cut(s)	325, 424
Bse8I	GATNNNNATC	3 cut(s)	9, 303, 404
BseBI	CCWGG	3 cut(s)	211, 296, 561
BseDI	CCNNGG	2 cut(s)	528, 560
BseGI	GGATG	3 cut(s)	304, 519, 596
BseJI	GATNNNNATC	3 cut(s)	9, 303, 404
BseLI	CCNNNNNNNGG	2 cut(s)	386, 529
BseNI	ACTGG	2 cut(s)	325, 424
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	429
BshFI	GGCC	2 cut(s)	98, 294
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	386, 529
BsmAI	GTCTC	1 cut(s)	231
BsmBI	CGTCTC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	98, 294
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	5 cut(s)	10, 119, 166, 213, 314
BspANI	GGCC	2 cut(s)	98, 294
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	3 cut(s)	114, 221, 322
BspQI	GCTCTTC	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	325, 424
BssECI	CCNNGG	2 cut(s)	528, 560
BssMI	GATC	5 cut(s)	10, 119, 166, 213, 314
Bst2UI	CCWGG	3 cut(s)	211, 296, 561
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	1 cut(s)	334
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstDEI	CTNAG	3 cut(s)	116, 308, 385
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	3 cut(s)	304, 519, 596
BstKTI	GATC	5 cut(s)	13, 122, 169, 216, 317
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	5 cut(s)	10, 119, 166, 213, 314
BstMWI	GCNNNNNNNGC	2 cut(s)	390, 451
BstNI	CCWGG	3 cut(s)	211, 296, 561
BstSCI	CCNGG	4 cut(s)	209, 230, 294, 559
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	429
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	2 cut(s)	119, 314
BstYI	RGATCY	2 cut(s)	119, 314
BsuRI	GGCC	2 cut(s)	98, 294
BtsCI	GGATG	3 cut(s)	304, 519, 596
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	2 cut(s)	494, 546
CviJI	RGCY	7 cut(s)	98, 182, 294, 327, 363, 508, 565
CviKI_1	RGCY	7 cut(s)	98, 182, 294, 327, 363, 508, 565
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	3 cut(s)	116, 308, 385
DpnI	GATC	5 cut(s)	12, 121, 168, 215, 316
DpnII	GATC	5 cut(s)	10, 119, 166, 213, 314
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	3 cut(s)	209, 294, 559
EcoT22I	ATGCAT	2 cut(s)	63, 112
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	2 cut(s)	497, 549
FaiI	YATR	9 cut(s)	63, 108, 143, 171, 173, 192, 495, 547, 551
FatI	CATG	2 cut(s)	493, 545
FauNDI	CATATG	1 cut(s)	171
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	513
Fnu4HI	GCNGC	1 cut(s)	443
FokI	GGATG	3 cut(s)	311, 506, 583
Fsp4HI	GCNGC	1 cut(s)	443
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	1 cut(s)	443
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	2 cut(s)	98, 294
HapII	CCGG	1 cut(s)	232
Hin1II	CATG	2 cut(s)	497, 549
HincII	GTYRAC	2 cut(s)	376, 499
HindII	GTYRAC	2 cut(s)	376, 499
HinfI	GANTC	1 cut(s)	304
HpaI	GTTAAC	1 cut(s)	499
HpaII	CCGG	1 cut(s)	232
Hpy166II	GTNNAC	3 cut(s)	376, 499, 514
Hpy188I	TCNGA	1 cut(s)	529
Hpy188III	TCNNGA	1 cut(s)	435
Hpy8I	GTNNAC	3 cut(s)	376, 499, 514
Hpy99I	CGWCG	1 cut(s)	265
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	4 cut(s)	61, 110, 205, 445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	390, 451
HpyF3I	CTNAG	3 cut(s)	116, 308, 385
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	497, 549
Ksp22I	TGATCA	1 cut(s)	10
KspAI	GTTAAC	1 cut(s)	499
Kzo9I	GATC	5 cut(s)	10, 119, 166, 213, 314
LguI	GCTCTTC	1 cut(s)	334
LmnI	GCTCC	1 cut(s)	568
Lsp1109I	GCAGC	1 cut(s)	429
LweI	GCATC	2 cut(s)	48, 119
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	2 cut(s)	415, 472
MalI	GATC	5 cut(s)	12, 121, 168, 215, 316
MboI	GATC	5 cut(s)	10, 119, 166, 213, 314
MboII	GAAGA	4 cut(s)	64, 96, 321, 324
MflI	RGATCY	2 cut(s)	119, 314
MhlI	GDGCHC	1 cut(s)	289
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	3 cut(s)	25, 187, 478
MluNI	TGGCCA	1 cut(s)	98
MnlI	CCTC	4 cut(s)	141, 144, 172, 523
Mox20I	TGGCCA	1 cut(s)	98
Mph1103I	ATGCAT	2 cut(s)	63, 112
MroXI	GAANNNNTTC	2 cut(s)	154, 352
MscI	TGGCCA	1 cut(s)	98
MseI	TTAA	2 cut(s)	195, 498
Msp20I	TGGCCA	1 cut(s)	98
MspI	CCGG	1 cut(s)	232
MspR9I	CCNGG	4 cut(s)	211, 232, 296, 561
MvaI	CCWGG	3 cut(s)	211, 296, 561
MwoI	GCNNNNNNNGC	2 cut(s)	390, 451
NciI	CCSGG	1 cut(s)	232
NdeI	CATATG	1 cut(s)	171
NdeII	GATC	5 cut(s)	10, 119, 166, 213, 314
NlaIII	CATG	2 cut(s)	497, 549
NlaIV	GGNNCC	1 cut(s)	229
NsiI	ATGCAT	2 cut(s)	63, 112
PciSI	GCTCTTC	1 cut(s)	334
PdmI	GAANNNNTTC	2 cut(s)	154, 352
PfeI	GAWTC	1 cut(s)	304
PfoI	TCCNGGA	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	444
Psp1406I	AACGTT	1 cut(s)	154
Psp6I	CCWGG	3 cut(s)	209, 294, 559
PspGI	CCWGG	3 cut(s)	209, 294, 559
PspN4I	GGNNCC	1 cut(s)	229
PsuI	RGATCY	2 cut(s)	119, 314
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	195, 498
SatI	GCNGC	1 cut(s)	443
Sau3AI	GATC	5 cut(s)	10, 119, 166, 213, 314
ScaI	AGTACT	1 cut(s)	280
ScrFI	CCNGG	4 cut(s)	211, 232, 296, 561
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	8 cut(s)	19, 157, 246, 260, 329, 391, 534, 605
SfaNI	GCATC	2 cut(s)	48, 119
SfcI	CTRYAG	1 cut(s)	369
SpeI	ACTAGT	1 cut(s)	281
Sse9I	AATT	3 cut(s)	25, 187, 478
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	4 cut(s)	209, 230, 294, 559
TaaI	ACNGT	1 cut(s)	472
TaiI	ACGT	1 cut(s)	157
TasI	AATT	3 cut(s)	25, 187, 478
TatI	WGTACW	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	2 cut(s)	195, 498
Tru9I	TTAA	2 cut(s)	195, 498
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	1 cut(s)	442
TspDTI	ATGAA	4 cut(s)	147, 158, 188, 324
TspRI	CASTG	1 cut(s)	132
XagI	CCTNNNNNAGG	1 cut(s)	384
XapI	RAATTY	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	513
XmnI	GAANNNNTTC	2 cut(s)	154, 352
XspI	CTAG	1 cut(s)	282
ZrmI	AGTACT	1 cut(s)	280
Zsp2I	ATGCAT	2 cut(s)	63, 112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.